Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048540 Amaranthus hybridus HOM05D006541 ORTHO05D008471 3.0e-224 781.6 411 100.0
AUR62021701 Chenopodium quinoa HOM05D006541 ORTHO05D008471 9.3e-189 663.7 411 81.8
AUR62008395 Chenopodium quinoa HOM05D006541 ORTHO05D008471 2.1e-188 662.5 411 81.5
Hund02657 Selenicereus undatus HOM05D006541 ORTHO05D008471 1.2e-175 620.2 411 77.6
EL10Ac5g10987 Beta vulgaris HOM05D006541 ORTHO05D008471 6.9e-168 594.3 379 81.0
Sc12g0006320 Simmondsia chinensis HOM05D006541 ORTHO05D008471 6.3e-153 544.7 412 70.9
TAR629G1448 Trochodendron aralioides HOM05D006541 ORTHO05D008471 1.8e-136 490.0 413 62.2
Dinv38701 Davidia involucrata HOM05D006541 ORTHO05D008471 4.1e-136 488.8 414 63.5
QL10p016702 Quercus lobata HOM05D006541 ORTHO05D008471 7.0e-136 488.0 427 62.1
GSVIVG01008019001 Vitis vinifera HOM05D006541 ORTHO05D008471 7.7e-135 484.6 414 63.0
Lj4g0004556 Lotus japonicus HOM05D006541 ORTHO05D008471 1.9e-133 479.9 393 63.9
Eucgr.B00491 Eucalyptus grandis HOM05D006541 ORTHO05D008471 3.2e-133 479.2 417 61.4
CiPaw.11G043400 Carya illinoinensis HOM05D006541 ORTHO05D008471 4.2e-133 478.8 386 65.0
Glyma.17G099300 Glycine max HOM05D006541 ORTHO05D008471 7.2e-133 478.0 425 61.2
Cfa018953 Carpinus fangiana HOM05D006541 ORTHO05D008471 1.6e-132 476.9 415 62.9
PGR083G1696 Punica granatum HOM05D006541 ORTHO05D008471 1.6e-132 476.9 410 61.5
Duzib205G0457 Durio zibethinus HOM05D006541 ORTHO05D008471 2.3e-131 473.0 400 62.8
Gohir.A03G066400 Gossypium hirsutum HOM05D006541 ORTHO05D008471 2.0e-130 469.9 397 63.2
VMungo1215G1397 Vigna mungo HOM05D006541 ORTHO05D008471 2.0e-130 469.9 425 60.7
Lj5A111T86 Lonicera japonica HOM05D006541 ORTHO05D008471 3.3e-130 469.2 382 65.2
Atru.chr9.2260 Acer truncatum HOM05D006541 ORTHO05D008471 4.4e-130 468.8 404 62.9
Psat4g051480 Pisum sativum HOM05D006541 ORTHO05D008471 1.7e-129 466.8 431 59.4
Phvul.003G190700 Phaseolus vulgaris HOM05D006541 ORTHO05D008471 2.8e-129 466.1 424 59.9
TAR371G1054 Trochodendron aralioides HOM05D006541 ORTHO05D008471 2.8e-129 466.1 391 62.1
Ciclev10020397m.g Citrus clementina HOM05D006541 ORTHO05D008471 2.4e-128 463.0 405 61.5
Hma1.2p1_0104F.1_g049970 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 4.1e-128 462.2 371 67.1
Prupe.5G192200 Prunus persica HOM05D006541 ORTHO05D008471 4.1e-128 462.2 418 60.5
Cc04_g16740 Coffea canephora HOM05D006541 ORTHO05D008471 2.0e-127 459.9 381 63.0
TPR.G34732 Trifolium pratense HOM05D006541 ORTHO05D008471 5.9e-127 458.4 436 59.6
Thecc.03G085100 Theobroma cacao HOM05D006541 ORTHO05D008471 7.7e-127 458.0 402 61.7
Ca_21826_v3 Cicer arietinum L. HOM05D006541 ORTHO05D008471 1.0e-126 457.6 430 57.9
Gohir.D03G093000 Gossypium hirsutum HOM05D006541 ORTHO05D008471 1.0e-126 457.6 385 63.1
Gorai.003G096900 Gossypium raimondii HOM05D006541 ORTHO05D008471 1.0e-126 457.6 430 58.8
arahy.Tifrunner.gnm1.ann1.84ES4F Arachis hypogaea HOM05D006541 ORTHO05D008471 1.3e-126 457.2 427 58.8
arahy.Tifrunner.gnm1.ann1.ZY6HCY Arachis hypogaea HOM05D006541 ORTHO05D008471 1.3e-126 457.2 427 58.8
MD14G1199100 Malus domestica HOM05D006541 ORTHO05D008471 1.3e-126 457.2 421 59.6
Rhsim08G0155500 Rhododendron simsii HOM05D006541 ORTHO05D008471 1.7e-126 456.8 363 66.4
Nitab4.5_0012137g0020 Nicotiana tabacum HOM05D006541 ORTHO05D008471 5.0e-126 455.3 433 57.5
Oeu006508.1 Olea europaea HOM05D006541 ORTHO05D008471 5.0e-126 455.3 381 63.5
CAN.G837.10 Capsicum annuum HOM05D006541 ORTHO05D008471 1.5e-125 453.8 430 57.2
Nn4g23149 Nelumbo nucifera HOM05D006541 ORTHO05D008471 1.9e-125 453.4 388 60.3
MBI05_g08285_MAGBIO Magnolia biondii HOM05D006541 ORTHO05D008471 3.2e-125 452.6 419 57.5
RcHm_v2.0_Chr7g0181151 Rosa chinensis HOM05D006541 ORTHO05D008471 3.2e-125 452.6 422 60.2
DCAR_016545 Daucus carota HOM05D006541 ORTHO05D008471 5.5e-125 451.8 381 61.9
FAN04G2599 Fragaria x ananassa HOM05D006541 ORTHO05D008471 7.2e-125 451.4 421 59.4
Medtr4g108590 Medicago truncatula HOM05D006541 ORTHO05D008471 9.4e-125 451.1 429 57.6
Nitab4.5_0000842g0050 Nicotiana tabacum HOM05D006541 ORTHO05D008471 1.2e-124 450.7 433 57.5
AT3G47610 Arabidopsis thaliana HOM05D006541 ORTHO05D008471 1.6e-124 450.3 412 59.0
BcaB01g00902 Brassica carinata HOM05D006541 ORTHO05D008471 1.6e-124 450.3 379 63.3
AL5G26900 Arabidopsis lyrata HOM05D006541 ORTHO05D008471 2.1e-124 449.9 412 59.2
FAN18G0374 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.6e-124 449.1 424 58.7
Lalb_Chr07g0178001 Lupinus albus HOM05D006541 ORTHO05D008471 3.6e-124 449.1 385 61.8
PSO063G0566 Papaver somniferum HOM05D006541 ORTHO05D008471 3.6e-124 449.1 411 56.7
THA.LOC104821445 Tarenaya hassleriana HOM05D006541 ORTHO05D008471 1.0e-123 447.6 427 56.7
Peaxi162Scf00274g00732 Petunia axillaris HOM05D006541 ORTHO05D008471 1.8e-123 446.8 432 57.4
Solyc03g116140.3 Solanum lycopersicum HOM05D006541 ORTHO05D008471 3.0e-123 446.0 410 60.5
CSS0042048 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 4.0e-123 445.7 396 61.9
CSS0004518 Camellia sinensis var. sinensis HOM05D006541 ORTHO05D008471 5.2e-123 445.3 414 59.7
CARHR156290 Cardamine hirsuta HOM05D006541 ORTHO05D008471 5.2e-123 445.3 379 62.3
Sopen03g035110 Solanum pennellii HOM05D006541 ORTHO05D008471 6.8e-123 444.9 408 59.8
TWI60G0844 Tripterygium wilfordii HOM05D006541 ORTHO05D008471 1.5e-122 443.7 400 59.8
Thhalv10010423m.g Eutrema salsugineum HOM05D006541 ORTHO05D008471 3.4e-122 442.6 380 61.3
FAN08G2919 Fragaria x ananassa HOM05D006541 ORTHO05D008471 3.4e-122 442.6 421 59.1
MSTRG.11386 Avicennia marina HOM05D006541 ORTHO05D008471 9.8e-122 441.0 377 62.9
A06p20010 Brassica napus HOM05D006541 ORTHO05D008471 9.8e-122 441.0 378 62.4
BraA06t25087Z Brassica rapa HOM05D006541 ORTHO05D008471 9.8e-122 441.0 378 62.4
Carub.0005s1374 Capsella rubella HOM05D006541 ORTHO05D008471 9.8e-122 441.0 409 58.4
BolC3t19470H Brassica oleracea HOM05D006541 ORTHO05D008471 1.7e-121 440.3 378 61.6
Lsat_1_v5_gn_1_13281 Lactuca sativa HOM05D006541 ORTHO05D008471 1.7e-121 440.3 378 61.1
HanXRQChr02g0041061 Helianthus annuus HOM05D006541 ORTHO05D008471 3.7e-121 439.1 380 62.1
MD06G1192400 Malus domestica HOM05D006541 ORTHO05D008471 8.3e-121 438.0 449 55.9
Actinidia37633 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.8e-120 436.8 393 60.8
FvH4_5g15050 Fragaria vesca HOM05D006541 ORTHO05D008471 1.8e-120 436.8 424 57.8
Sp5g14300 Schrenkiella parvula HOM05D006541 ORTHO05D008471 2.4e-120 436.4 378 61.6
Aqoxy3G03367 Aquilegia oxysepala HOM05D006541 ORTHO05D008471 4.1e-120 435.6 414 57.2
BcaC01g01798 Brassica carinata HOM05D006541 ORTHO05D008471 7.0e-120 434.9 378 61.1
C03p71820 Brassica napus HOM05D006541 ORTHO05D008471 7.0e-120 434.9 378 61.1
PGSC0003DMG400019513 Solanum tuberosum HOM05D006541 ORTHO05D008471 1.2e-119 434.1 408 58.6
Potri.012G068900 Populus trichocarpa HOM05D006541 ORTHO05D008471 4.2e-117 425.6 390 61.5
Migut.I00173 Erythranthe guttata HOM05D006541 ORTHO05D008471 5.2e-115 418.7 369 60.2
HPP92_016827 Vanilla planifolia HOM05D006541 ORTHO05D008471 5.2e-115 418.7 407 56.8
CANSAT25G3319 Cannabis sativa HOM05D006541 ORTHO05D008471 1.5e-114 417.2 431 55.9
HPP92_016797 Vanilla planifolia HOM05D006541 ORTHO05D008471 1.5e-114 417.2 407 56.8
CDE06G2127 Ceratophyllum demersum HOM05D006541 ORTHO05D008471 3.4e-114 416.0 422 52.6
Haze_07335 Corylus avellana HOM05D006541 ORTHO05D008471 2.2e-113 413.3 378 60.1
SGA_v2.0_scaffold25G10913 Striga asiatica HOM05D006541 ORTHO05D008471 2.8e-113 412.9 382 59.9
ECA247G0129 Erigeron canadensis HOM05D006541 ORTHO05D008471 1.6e-111 407.1 379 57.5
COL.COLO4_24520 Corchorus olitorius HOM05D000087 ORTHO05D008471 1.3e-110 404.1 386 63.0
ClCG04G012330 Citrullus lanatus HOM05D006541 ORTHO05D008471 5.0e-110 402.1 370 60.0
Sabra12G0049100 Salix brachista HOM05D006541 ORTHO05D008471 1.5e-109 400.6 461 51.6
CsaV3_1G005390 Cucumis sativus L. HOM05D006541 ORTHO05D008471 6.1e-108 395.2 348 61.2
BcaB05g23063 Brassica carinata HOM05D006541 ORTHO05D008471 8.9e-107 391.3 361 57.6
MELO3C001974.2 Cucumis melo HOM05D006541 ORTHO05D008471 7.5e-106 388.3 372 58.1
unitig_0.g2528 Utricularia gibba HOM05D006541 ORTHO05D008471 2.9e-105 386.3 377 54.4
Manes.06G093400 Manihot esculenta HOM05D006541 ORTHO05D008471 2.4e-104 383.3 357 60.8
ATR0598G034 Amborella trichopoda HOM05D006541 ORTHO05D008471 1.2e-103 380.9 379 56.5
Cpa.g.c35819 Carica papaya HOM05D006541 ORTHO05D008471 1.3e-102 377.5 360 58.6
Sed0004898 Sechium edule HOM05D006541 ORTHO05D008471 1.1e-101 374.4 338 59.2
Aa31LG4G16360 Aethionema arabicum HOM05D006541 ORTHO05D008471 1.2e-98 364.4 453 49.4
Hma1.2p1_0104F.1_g049980 Hydrangea macrophylla HOM05D006541 ORTHO05D008471 3.4e-98 362.8 326 61.7
vmacro17549 Vaccinium macrocarpon HOM05D006541 ORTHO05D008471 1.5e-90 337.4 402 48.5
Actinidia04898 Actinidia chinensis HOM05D006541 ORTHO05D008471 1.6e-87 327.4 248 69.4
Zm00001eb312480 Zea mays HOM05D006541 ORTHO05D008471 5.4e-80 302.4 294 56.8
Pp3c16_180 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.7e-76 289.3 420 43.1
Pp3c16_188 Physcomitrium patens HOM05D006541 ORTHO05D003603 4.7e-76 289.3 420 43.1
Mapoly0060s0059 Marchantia polymorpha HOM05D006541 ORTHO05D003603 2.2e-73 280.4 389 45.0
SEGI_30902 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 5.6e-69 265.8 333 45.0
AagrBONN_evm.TU.Sc2ySwM_228.4960 Anthoceros agrestis HOM05D006541 ORTHO05D008471 4.8e-68 262.7 387 41.6
Potri.003G168100 Populus trichocarpa HOM05D006541 ORTHO05D008471 2.4e-56 223.8 157 72.0
CBR_g8828 Chara braunii HOM05D003341 ORTHO05D003603 1.3e-38 164.9 456 32.7
Actinidia04899 Actinidia chinensis HOM05D006541 ORTHO05D008471 2.7e-31 140.6 105 64.8
Os09g0413100 Oryza sativa ssp. japonica HOM05D006541 ORTHO05D008471 8.8e-30 135.6 177 45.8
Cpa.g.sc111.3 Carica papaya HOM05D006541 ORTHO05D008471 9.7e-29 132.1 101 62.4
SEGI_16548 Sequoiadendron giganteum HOM05D003341 ORTHO05D003603 6.9e-27 125.9 346 30.3
Sed0007979 Sechium edule HOM05D006541 ORTHO05D008471 2.0e-18 97.8 73 61.6
Cre09.g412350 Chlamydomonas reinhardtii HOM05D003341 ORTHO05D003603 5.7e-13 79.7 187 33.7
MELO3C035773.2 Cucumis melo HOM05D006541 ORTHO05D008471 2.8e-12 77.4 50 70.0
CsaV3_1G005410 Cucumis sativus L. HOM05D006541 ORTHO05D008471 2.8e-12 77.4 50 70.0
PRCOL_00002459 Prasinoderma coloniale HOM05D006541 ORTHO05D008471 2.8e-12 77.4 141 35.5
vmacro17551 Vaccinium macrocarpon HOM05D006541 ORTHO05D000277 4.8e-12 76.6 50 70.0
Haze_07334 Corylus avellana HOM05D006541 ORTHO05D008471 1.1e-11 75.5 52 71.2
SEGI_20393 Sequoiadendron giganteum HOM05D006541 ORTHO05D008471 1.6e-07 61.6 45 64.4
FAN09G1066 Fragaria x ananassa HOM05D007752 ORTHO05D009994 6.8e-06 56.2 144 38.9


User provided reference genes

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