Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048310 Amaranthus hybridus HOM05D007067 ORTHO05D008864 1.3e-67 259.6 131 100.0
AUR62021654 Chenopodium quinoa HOM05D007067 ORTHO05D008864 8.4e-19 97.4 105 54.3
Actinidia04879 Actinidia chinensis HOM05D007067 ORTHO05D008864 1.2e-17 93.6 104 51.9
CSS0040643 Camellia sinensis var. sinensis HOM05D007067 ORTHO05D008864 2.1e-17 92.8 99 52.5
EL10Ac5g11044 Beta vulgaris HOM05D007067 ORTHO05D008864 2.7e-17 92.4 99 56.6
Cc04_g16320 Coffea canephora HOM05D007067 ORTHO05D008864 6.7e-16 87.8 100 51.0
CAN.G846.12 Capsicum annuum HOM05D007067 ORTHO05D008864 1.1e-15 87.0 97 50.5
Sopen12g016290 Solanum pennellii HOM05D007067 ORTHO05D008864 1.9e-15 86.3 90 52.2
Hma1.2p1_0637F.1_g193620 Hydrangea macrophylla HOM05D007067 ORTHO05D008864 4.3e-15 85.1 45 82.2
GSVIVG01004672001 Vitis vinifera HOM05D007067 ORTHO05D008864 4.3e-15 85.1 100 49.0
GSVIVG01005334001 Vitis vinifera HOM05D007067 ORTHO05D008864 4.3e-15 85.1 100 49.0
Nitab4.5_0003381g0030 Nicotiana tabacum HOM05D007067 ORTHO05D008864 5.7e-15 84.7 97 48.5
Nitab4.5_0005226g0040 Nicotiana tabacum HOM05D007067 ORTHO05D008864 7.4e-15 84.3 97 48.5
AUR62008437 Chenopodium quinoa HOM05D007067 ORTHO05D008864 9.6e-15 84.0 82 54.9
CANSAT56G4102 Cannabis sativa HOM05D007067 ORTHO05D008864 1.3e-14 83.6 103 46.6
Nn3g17293 Nelumbo nucifera HOM05D007067 ORTHO05D008864 1.3e-14 83.6 100 48.0
Sabra12G0047100 Salix brachista HOM05D007067 ORTHO05D008864 1.6e-14 83.2 96 50.0
Solyc12g036170.2 Solanum lycopersicum HOM05D007067 ORTHO05D008864 2.8e-14 82.4 90 51.1
PGSC0003DMG400021933 Solanum tuberosum HOM05D007067 ORTHO05D008864 2.8e-14 82.4 91 52.7
MSTRG.9621 Avicennia marina HOM05D007067 ORTHO05D008864 3.7e-14 82.0 101 47.5
Potri.012G068500 Populus trichocarpa HOM05D007067 ORTHO05D008864 3.7e-14 82.0 99 49.5
vmacro17532 Vaccinium macrocarpon HOM05D007067 ORTHO05D008864 4.8e-14 81.6 100 41.0
CDE02G3919 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 8.2e-14 80.9 45 77.8
CDE09G1053 Ceratophyllum demersum HOM05D007067 ORTHO05D008864 8.2e-14 80.9 45 77.8
Manes.06G091000 Manihot esculenta HOM05D007067 ORTHO05D008864 1.1e-13 80.5 100 46.0
Ciclev10022880m.g Citrus clementina HOM05D007067 ORTHO05D008864 1.4e-13 80.1 45 75.6
Rhsim08G0153200 Rhododendron simsii HOM05D007067 ORTHO05D008864 1.8e-13 79.7 99 45.5
unitig_0.g778 Utricularia gibba HOM05D007067 ORTHO05D008864 1.8e-13 79.7 40 82.5
QL10p017305 Quercus lobata HOM05D007067 ORTHO05D008864 2.4e-13 79.3 100 47.0
SalBow3G2729 Salvia bowleyana HOM05D007067 ORTHO05D008864 3.1e-13 79.0 45 75.6
TWI60G1483 Tripterygium wilfordii HOM05D007067 ORTHO05D008864 4.1e-13 78.6 99 47.5
Lj5A109T72 Lonicera japonica HOM05D007067 ORTHO05D008864 6.9e-13 77.8 45 82.2
TAR622G0622 Trochodendron aralioides HOM05D007067 ORTHO05D008864 6.9e-13 77.8 47 70.2
ClCG06G016120 Citrullus lanatus HOM05D007067 ORTHO05D008864 9.0e-13 77.4 48 75.0
Lj1g0007284 Lotus japonicus HOM05D007067 ORTHO05D008864 9.0e-13 77.4 108 46.3
Psat5g201280 Pisum sativum HOM05D007067 ORTHO05D008864 1.5e-12 76.6 67 56.7
Sed0012968 Sechium edule HOM05D007067 ORTHO05D008864 1.5e-12 76.6 77 54.5
Cpa.g.sc111.20 Carica papaya HOM05D007067 ORTHO05D008864 2.6e-12 75.9 84 50.0
Prupe.5G195500 Prunus persica HOM05D007067 ORTHO05D008864 2.6e-12 75.9 45 77.8
CiPaw.11G046200 Carya illinoinensis HOM05D007067 ORTHO05D008864 3.4e-12 75.5 99 46.5
Ca_27682_v3 Cicer arietinum L. HOM05D007067 ORTHO05D008864 3.4e-12 75.5 48 64.6
MELO3C017182.2 Cucumis melo HOM05D007067 ORTHO05D008864 3.4e-12 75.5 99 47.5
Migut.D01803 Erythranthe guttata HOM05D007067 ORTHO05D008864 3.4e-12 75.5 101 42.6
Glyma.04G167400 Glycine max HOM05D007067 ORTHO05D008864 5.9e-12 74.7 105 44.8
MBI02_g12272_MAGBIO Magnolia biondii HOM05D007067 ORTHO05D008864 7.6e-12 74.3 45 66.7
Phvul.009G186200 Phaseolus vulgaris HOM05D007067 ORTHO05D008864 7.6e-12 74.3 100 45.0
Eucgr.K02487 Eucalyptus grandis HOM05D007067 ORTHO05D008864 1.0e-11 73.9 87 46.0
Glyma.06G195200 Glycine max HOM05D007067 ORTHO05D008864 1.3e-11 73.6 105 43.8
Lalb_Chr08g0235641 Lupinus albus HOM05D007067 ORTHO05D008864 1.3e-11 73.6 109 46.8
CsaV3_1G002440 Cucumis sativus L. HOM05D007067 ORTHO05D008864 1.7e-11 73.2 99 46.5
MD06G1195600 Malus domestica HOM05D007067 ORTHO05D008864 2.2e-11 72.8 45 75.6
arahy.Tifrunner.gnm1.ann1.JMB3VF Arachis hypogaea HOM05D007067 ORTHO05D008864 2.9e-11 72.4 48 72.9
arahy.Tifrunner.gnm1.ann1.V8ZK3N Arachis hypogaea HOM05D007067 ORTHO05D008864 2.9e-11 72.4 48 72.9
MD14G1202700 Malus domestica HOM05D007067 ORTHO05D008864 3.8e-11 72.0 40 82.5
Peaxi162Scf00106g00326 Petunia axillaris HOM05D007067 ORTHO05D008864 3.8e-11 72.0 40 77.5
Manes.06G090801 Manihot esculenta HOM05D007067 ORTHO05D008864 5.0e-11 71.6 113 42.5
Cfa018925 Carpinus fangiana HOM05D007067 ORTHO05D008864 6.5e-11 71.2 99 47.5
Gohir.A03G067300 Gossypium hirsutum HOM05D007067 ORTHO05D008864 8.4e-11 70.9 47 70.2
Gohir.D03G093800 Gossypium hirsutum HOM05D007067 ORTHO05D008864 8.4e-11 70.9 47 70.2
Gorai.003G097800 Gossypium raimondii HOM05D007067 ORTHO05D008864 8.4e-11 70.9 47 70.2
Medtr3g435320 Medicago truncatula HOM05D007067 ORTHO05D008864 1.1e-10 70.5 45 68.9
TPR.G11876 Trifolium pratense HOM05D007067 ORTHO05D008864 1.1e-10 70.5 45 68.9
FvH4_5g14690 Fragaria vesca HOM05D007067 ORTHO05D008864 1.4e-10 70.1 45 68.9
FAN08G0270 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.4e-10 70.1 45 68.9
FAN13G0188 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.4e-10 70.1 45 68.9
FAN18G1220 Fragaria x ananassa HOM05D007067 ORTHO05D008864 1.4e-10 70.1 45 68.9
DCAR_016569 Daucus carota HOM05D007067 ORTHO05D008864 1.9e-10 69.7 47 68.1
Duzib205G1209 Durio zibethinus HOM05D007067 ORTHO05D008864 1.9e-10 69.7 48 66.7
PSO063G5395 Papaver somniferum HOM05D007067 ORTHO05D008864 1.9e-10 69.7 46 67.4
PSO832G0421 Papaver somniferum HOM05D007067 ORTHO05D008864 1.9e-10 69.7 46 67.4
Eucgr.K02485 Eucalyptus grandis HOM05D007067 ORTHO05D008864 2.5e-10 69.3 45 66.7
COL.COLO4_28333 Corchorus olitorius HOM05D007067 ORTHO05D008864 4.2e-10 68.6 88 45.5
HanXRQChr05g0156061 Helianthus annuus HOM05D007067 ORTHO05D008864 4.2e-10 68.6 97 43.3
RcHm_v2.0_Chr7g0181701 Rosa chinensis HOM05D007067 ORTHO05D008864 4.2e-10 68.6 45 66.7
Aqoxy3G00483 Aquilegia oxysepala HOM05D007067 ORTHO05D008864 5.5e-10 68.2 101 39.6
ECA246G0430 Erigeron canadensis HOM05D007067 ORTHO05D008864 9.3e-10 67.4 45 66.7
Dinv38731 Davidia involucrata HOM05D007067 ORTHO05D008864 1.6e-09 66.6 88 43.2
Lsat_1_v5_gn_5_20880 Lactuca sativa HOM05D007067 ORTHO05D008864 1.6e-09 66.6 43 69.8
Thecc.03G091100 Theobroma cacao HOM05D007067 ORTHO05D008864 6.1e-09 64.7 104 39.4
THA.LOC104808257 Tarenaya hassleriana HOM05D007067 ORTHO05D008864 7.9e-09 64.3 105 40.0
Atru.chr9.195 Acer truncatum HOM05D007067 ORTHO05D008864 3.9e-08 62.0 95 43.2
BcaC05g25773 Brassica carinata HOM05D007067 ORTHO05D008864 1.1e-07 60.5 94 41.5
AT1G18730 Arabidopsis thaliana HOM05D007067 ORTHO05D008864 1.5e-07 60.1 94 41.5
AL1G31200 Arabidopsis lyrata HOM05D007067 ORTHO05D008864 1.9e-07 59.7 97 40.2
BcaB07g31890 Brassica carinata HOM05D007067 ORTHO05D008864 1.9e-07 59.7 95 42.1
BcaC07g41296 Brassica carinata HOM05D007067 ORTHO05D008864 2.5e-07 59.3 78 46.2
A06p14840 Brassica napus HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
A09p59720 Brassica napus HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
C05p17040 Brassica napus HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
C08p43060 Brassica napus HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
BolC5t30410H Brassica oleracea HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
BolC8t51861H Brassica oleracea HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
BraA06t24606Z Brassica rapa HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
BraA09t41348Z Brassica rapa HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
Carub.0001s1838 Capsella rubella HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
CARHR019370 Cardamine hirsuta HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
Thhalv10008902m.g Eutrema salsugineum HOM05D007067 ORTHO05D008864 2.5e-07 59.3 46 60.9
PGR044G1431 Punica granatum HOM05D007067 ORTHO05D008864 2.5e-07 59.3 90 42.2
BcaB03g14481 Brassica carinata HOM05D007067 ORTHO05D008864 3.3e-07 58.9 46 60.9
Sp1g16740 Schrenkiella parvula HOM05D007067 ORTHO05D008864 4.3e-07 58.5 100 40.0
Peaxi162Scf00106g00037 Petunia axillaris HOM05D007067 ORTHO05D008864 1.6e-06 56.6 30 80.0
ATR0564G121 Amborella trichopoda HOM05D007067 ORTHO05D008864 3.7e-06 55.5 114 37.7


User provided reference genes

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