Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 1.8e-61 239.2 128 100.0
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 1.8e-26 122.9 115 58.3
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.0e-24 117.1 112 54.5
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.4e-20 101.7 93 62.4
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 4.8e-19 98.2 82 57.3
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 6.3e-19 97.8 82 57.3
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.8e-18 96.3 82 56.1
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.1e-18 95.1 90 61.1
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 4.1e-18 95.1 84 53.6
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 7.0e-18 94.4 78 56.4
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 2.0e-17 92.8 78 57.7
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 5.9e-17 91.3 87 47.1
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 5.9e-17 91.3 78 56.4
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 5.9e-17 91.3 81 53.1
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 7.7e-17 90.9 80 50.0
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 3.8e-16 88.6 84 51.2
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 5.0e-16 88.2 99 45.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 6.5e-16 87.8 78 51.3
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 2.5e-15 85.9 80 52.5
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 2.5e-15 85.9 84 48.8
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 2.5e-15 85.9 87 48.3
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 3.2e-15 85.5 99 46.5
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 4.2e-15 85.1 80 50.0
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 4.2e-15 85.1 81 48.1
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 4.2e-15 85.1 81 46.9
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 5.5e-15 84.7 96 42.7
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 7.2e-15 84.3 84 47.6
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 9.4e-15 84.0 84 46.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 9.4e-15 84.0 96 43.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 9.4e-15 84.0 86 48.8
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.6e-14 83.2 80 48.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.6e-14 83.2 105 44.8
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.1e-14 82.8 81 48.1
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 2.7e-14 82.4 80 51.2
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 2.7e-14 82.4 99 43.4
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 3.6e-14 82.0 81 45.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 3.6e-14 82.0 84 48.8
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 3.6e-14 82.0 84 46.4
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 3.6e-14 82.0 100 47.0
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 4.7e-14 81.6 87 47.1
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 6.1e-14 81.3 99 43.4
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 8.0e-14 80.9 80 46.2
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 8.0e-14 80.9 84 50.0
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 8.0e-14 80.9 86 43.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 1.0e-13 80.5 81 44.4
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 1.0e-13 80.5 84 46.4
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.4e-13 80.1 81 48.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.4e-13 80.1 75 52.0
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.8e-13 79.7 81 48.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.8e-13 79.7 97 46.4
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.8e-13 79.7 81 46.9
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 1.8e-13 79.7 81 51.9
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.8e-13 79.7 80 48.8
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.8e-13 79.7 79 43.0
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 2.3e-13 79.3 81 49.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 3.0e-13 79.0 87 44.8
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 3.0e-13 79.0 80 47.5
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 4.0e-13 78.6 84 42.9
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 4.0e-13 78.6 80 45.0
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 6.8e-13 77.8 86 44.2
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 8.8e-13 77.4 81 45.7
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.5e-12 76.6 81 44.4
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 2.6e-12 75.9 80 47.5
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 3.4e-12 75.5 84 42.9
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 4.4e-12 75.1 80 43.8
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.4e-12 75.1 84 44.0
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 4.4e-12 75.1 87 42.5
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 2.2e-11 72.8 87 43.7
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 2.2e-11 72.8 87 43.7
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 2.8e-11 72.4 86 41.9
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 3.7e-11 72.0 86 43.0
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 4.8e-11 71.6 80 45.0
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.1e-10 70.5 80 42.5
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.4e-10 70.1 112 38.4
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.4e-10 70.1 84 40.5
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 1.4e-10 70.1 78 41.0
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.8e-10 69.7 71 45.1
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.8e-10 69.7 89 39.3
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.4e-10 69.3 64 48.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 3.1e-10 68.9 80 41.2
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 4.1e-10 68.6 78 46.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 5.4e-10 68.2 87 40.2
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 7.0e-10 67.8 83 47.0
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 7.0e-10 67.8 83 42.2
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 9.1e-10 67.4 86 34.9
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.2e-09 67.0 86 34.9
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 5.9e-09 64.7 110 34.5
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 1.7e-08 63.2 81 39.5
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 3.8e-08 62.0 63 46.0
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 3.8e-08 62.0 81 38.3
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.9e-07 59.7 78 33.3
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 6.1e-06 54.7 120 30.8
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 6.1e-06 54.7 52 53.8


User provided reference genes

Program Settings