Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 0.0e+00 1096.6 539 100.0
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 2.9e-235 818.5 570 71.8
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.1e-224 783.5 557 71.6
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 2.7e-220 768.8 583 67.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 1.0e-203 713.8 560 64.6
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 1.2e-191 673.7 571 59.2
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.0e-163 580.9 567 52.7
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 8.8e-163 577.8 579 52.0
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 2.7e-156 556.2 568 50.2
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 6.1e-156 555.1 567 49.9
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 1.8e-155 553.5 567 49.7
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.8e-155 553.5 575 49.2
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.1e-155 552.0 545 52.7
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 8.8e-155 551.2 567 49.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 8.8e-155 551.2 568 50.2
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 2.6e-154 549.7 573 50.1
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 4.4e-154 548.9 572 49.8
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 1.1e-152 544.3 569 49.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 1.4e-152 543.9 570 50.5
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 9.1e-152 541.2 567 49.7
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.5e-151 540.4 584 48.5
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 2.2e-150 536.6 614 49.7
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 5.5e-149 531.9 560 50.0
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 2.3e-147 526.6 552 50.0
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 6.7e-147 525.0 574 47.2
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 1.1e-146 524.2 567 48.7
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.2e-145 520.0 570 47.9
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 2.2e-145 520.0 575 47.7
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 2.8e-145 519.6 560 48.4
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 6.3e-145 518.5 569 48.0
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 8.2e-145 518.1 569 48.7
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 3.1e-144 516.2 555 49.7
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 7.0e-144 515.0 571 47.8
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 1.2e-143 514.2 581 48.0
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.2e-143 514.2 551 48.3
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 5.9e-143 511.9 561 46.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-142 509.6 550 49.1
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 3.8e-142 509.2 564 48.4
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 4.2e-141 505.8 566 47.3
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 9.4e-141 504.6 562 48.6
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 1.0e-139 501.1 580 45.5
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.0e-139 501.1 573 46.8
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 5.2e-139 498.8 574 45.8
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 6.3e-137 491.9 575 46.4
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 1.4e-136 490.7 565 45.8
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 4.1e-136 489.2 558 47.1
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 1.6e-135 487.3 552 46.4
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 1.0e-134 484.6 609 45.3
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 3.8e-134 482.6 576 45.3
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 5.0e-134 482.3 567 45.5
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 1.9e-133 480.3 569 45.2
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 5.5e-133 478.8 557 46.3
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 7.2e-133 478.4 585 46.5
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 7.2e-133 478.4 690 40.1
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 1.6e-132 477.2 570 45.1
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 3.6e-132 476.1 566 45.8
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.8e-131 473.8 566 44.7
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 3.0e-131 473.0 617 41.8
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 3.0e-131 473.0 567 45.7
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 2.0e-130 470.3 583 46.1
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.4e-130 469.2 540 46.5
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 2.4e-128 463.4 475 49.3
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.4e-128 462.2 567 44.6
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 5.4e-128 462.2 557 44.5
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 9.1e-128 461.5 570 45.3
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 1.6e-127 460.7 558 43.5
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 4.5e-127 459.1 558 43.7
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 4.5e-127 459.1 553 44.3
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 1.0e-126 458.0 590 42.5
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 2.3e-126 456.8 559 43.6
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 2.9e-126 456.4 583 42.4
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 3.3e-125 453.0 564 42.7
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 4.2e-125 452.6 567 44.6
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 5.5e-125 452.2 588 42.7
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 4.7e-124 449.1 574 42.3
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 1.4e-123 447.6 584 43.7
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 2.8e-121 439.9 572 42.1
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 3.2e-120 436.4 568 42.3
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.9e-118 429.9 636 38.7
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 5.0e-118 429.1 587 40.7
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 9.5e-117 424.9 450 47.1
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.0e-114 417.2 533 43.0
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 4.1e-112 409.5 572 40.0
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 7.0e-112 408.7 409 51.3
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 3.0e-110 403.3 570 41.4
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 7.3e-109 398.7 533 43.0
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 1.1e-107 394.8 562 40.6
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 4.4e-106 389.4 563 39.8
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.3e-102 377.9 382 49.2
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 2.3e-102 377.1 397 50.4
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 2.1e-100 370.5 527 41.4
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 8.1e-100 368.6 327 56.0
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 1.2e-90 338.2 587 34.6
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 1.6e-84 317.8 377 46.9
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 5.8e-82 309.3 302 53.0
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 5.8e-82 309.3 466 36.9
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.3e-78 298.1 532 34.6
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.8e-75 287.7 581 32.5
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 3.4e-74 283.5 237 54.4
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-69 268.5 321 41.7
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 7.2e-48 196.1 268 40.7
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.6e-47 193.7 274 38.0
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 4.8e-44 183.3 232 44.8
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 3.8e-41 173.7 228 43.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 1.1e-37 162.2 229 43.2
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.5e-37 161.8 234 38.0
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 2.0e-37 161.4 140 59.3
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 5.7e-37 159.8 452 28.3
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.4e-35 154.5 305 31.5
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 1.1e-32 145.6 262 34.4
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.9e-32 144.8 174 43.1
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.3e-30 137.9 204 36.3
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.0e-30 137.1 301 32.2
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 1.1e-29 135.6 164 46.3
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.2e-28 131.3 307 30.6
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.1e-27 125.9 161 43.5
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-25 122.1 263 30.0
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.5e-24 116.7 169 36.7
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.0e-23 112.8 155 40.0
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 2.3e-22 111.3 262 31.7
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 3.0e-22 110.9 91 56.0
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.8e-22 109.4 125 43.2
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.3e-20 102.8 215 32.1
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.2e-18 99.0 133 37.6
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.5e-16 91.3 89 47.2
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.2e-15 89.0 89 46.1
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 2.7e-15 87.8 187 29.9
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 2.7e-15 87.8 89 47.2
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.0e-15 86.3 89 44.9
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 1.0e-14 85.9 111 38.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.5e-13 82.0 89 43.8
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 2.6e-13 81.3 320 24.4
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 2.6e-13 81.3 92 42.4
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-13 81.3 95 44.2
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.4e-13 80.5 177 31.6
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 4.4e-13 80.5 143 36.4
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 7.5e-13 79.7 76 48.7
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 9.1e-11 72.8 83 47.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 7.7e-10 69.7 58 56.9
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.2e-08 63.9 161 26.1
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.5e-08 62.8 89 41.6
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 2.1e-07 61.6 58 53.4
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 2.1e-07 61.6 49 59.2
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 3.6e-07 60.8 92 38.0
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.1e-07 60.1 68 44.1
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 5.2e-06 57.0 77 39.0
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 8.9e-06 56.2 75 41.3


User provided reference genes

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