Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g048070 Amaranthus hybridus HOM05D002953 ORTHO05D003249 4.7e-141 504.6 267 100.0
EL10Ac5g11089 Beta vulgaris HOM05D002953 ORTHO05D003249 3.9e-87 325.5 267 66.7
AUR62008487 Chenopodium quinoa HOM05D002953 ORTHO05D003249 4.9e-74 282.0 265 62.3
Sc10g0009790 Simmondsia chinensis HOM05D002953 ORTHO05D003249 2.0e-38 163.7 221 46.2
GSVIVG01007915001 Vitis vinifera HOM05D002953 ORTHO05D003249 2.8e-29 133.3 230 37.8
Sed0013431 Sechium edule HOM05D002953 ORTHO05D003249 1.8e-28 130.6 276 34.1
Actinidia19011 Actinidia chinensis HOM05D002953 ORTHO05D003249 2.0e-27 127.1 276 33.7
MELO3C002011.2 Cucumis melo HOM05D002953 ORTHO05D003249 2.0e-27 127.1 225 39.6
Manes.14G083400 Manihot esculenta HOM05D002953 ORTHO05D003249 2.6e-27 126.7 224 38.4
ClCG04G011980 Citrullus lanatus HOM05D002953 ORTHO05D003249 7.7e-27 125.2 276 34.4
Lj1g0024895 Lotus japonicus HOM05D002953 ORTHO05D003249 1.0e-26 124.8 225 35.6
CsaV3_1G005800 Cucumis sativus L. HOM05D002953 ORTHO05D003249 2.2e-26 123.6 275 36.7
FvH4_5g14350 Fragaria vesca HOM05D002953 ORTHO05D003249 2.5e-25 120.2 238 36.1
DCAR_026019 Daucus carota HOM05D002953 ORTHO05D003249 2.7e-24 116.7 254 36.6
Hma1.2p1_0060F.1_g033360 Hydrangea macrophylla HOM05D002953 ORTHO05D003249 3.6e-24 116.3 223 35.0
Sp2g24510 Schrenkiella parvula HOM05D002953 ORTHO05D003249 4.7e-24 115.9 226 36.3
THA.LOC104818328 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 4.7e-24 115.9 218 38.1
Atru.chr9.285 Acer truncatum HOM05D002953 ORTHO05D003249 6.1e-24 115.5 232 38.8
AL8G37940 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 6.7e-23 112.1 277 36.5
CSS0035960 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 2.0e-22 110.5 275 35.3
Gohir.A12G180300 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.0e-22 110.5 224 36.2
Psat5g198520 Pisum sativum HOM05D002953 ORTHO05D003249 2.0e-22 110.5 219 36.1
TAR622G0728 Trochodendron aralioides HOM05D002953 ORTHO05D003249 3.3e-22 109.8 286 33.2
Duzib205G1659 Durio zibethinus HOM05D002953 ORTHO05D003249 4.4e-22 109.4 228 36.4
COL.COLO4_36882 Corchorus olitorius HOM05D002953 ORTHO05D003249 5.7e-22 109.0 242 34.7
Medtr3g023650 Medicago truncatula HOM05D002953 ORTHO05D003249 5.7e-22 109.0 221 36.2
QL10p018596 Quercus lobata HOM05D002953 ORTHO05D003249 5.7e-22 109.0 295 31.5
RcHm_v2.0_Chr7g0182351 Rosa chinensis HOM05D002953 ORTHO05D003249 5.7e-22 109.0 245 32.2
Prupe.5G200200 Prunus persica HOM05D002953 ORTHO05D003249 9.7e-22 108.2 229 33.2
MD06G1199500 Malus domestica HOM05D002953 ORTHO05D003249 1.3e-21 107.8 222 35.6
Gorai.008G196300 Gossypium raimondii HOM05D002953 ORTHO05D003249 2.8e-21 106.7 224 35.7
arahy.Tifrunner.gnm1.ann1.K4MPXF Arachis hypogaea HOM05D002953 ORTHO05D003249 3.7e-21 106.3 240 34.6
BcaC06g33225 Brassica carinata HOM05D002953 ORTHO05D003249 3.7e-21 106.3 222 34.7
Gohir.D12G183000 Gossypium hirsutum HOM05D002953 ORTHO05D003249 3.7e-21 106.3 224 35.7
Thecc.03G096500 Theobroma cacao HOM05D002953 ORTHO05D003249 3.7e-21 106.3 226 35.8
Haze_07674 Corylus avellana HOM05D002953 ORTHO05D003249 4.8e-21 105.9 219 36.1
Rhsim12G0152800 Rhododendron simsii HOM05D002953 ORTHO05D003249 4.8e-21 105.9 219 37.0
Oeu032216.1 Olea europaea HOM05D002953 ORTHO05D003249 6.3e-21 105.5 221 35.3
Cc00_g02220 Coffea canephora HOM05D002953 ORTHO05D003249 8.2e-21 105.1 230 34.8
Solyc06g069590.3 Solanum lycopersicum HOM05D002953 ORTHO05D003249 8.2e-21 105.1 224 36.2
Potri.015G049700 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.1e-20 104.8 225 33.8
Sed0010847 Sechium edule HOM05D002953 ORTHO05D003249 1.4e-20 104.4 245 33.1
Nitab4.5_0001688g0010 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.8e-20 104.0 218 35.3
Rhsim12G0152900 Rhododendron simsii HOM05D002953 ORTHO05D003249 3.1e-20 103.2 219 36.5
Sopen06g026890 Solanum pennellii HOM05D002953 ORTHO05D003249 3.1e-20 103.2 224 35.3
SalBow5G1999 Salvia bowleyana HOM05D002953 ORTHO05D003249 5.3e-20 102.4 218 33.9
CARHR275030 Cardamine hirsuta HOM05D002953 ORTHO05D003249 7.0e-20 102.1 273 34.4
arahy.Tifrunner.gnm1.ann1.52HBJM Arachis hypogaea HOM05D002953 ORTHO05D003249 9.1e-20 101.7 240 33.3
Peaxi162Scf00013g00538 Petunia axillaris HOM05D002953 ORTHO05D003249 1.6e-19 100.9 218 33.0
CAN.G587.22 Capsicum annuum HOM05D002953 ORTHO05D003249 2.0e-19 100.5 218 34.9
Nitab4.5_0006673g0090 Nicotiana tabacum HOM05D002953 ORTHO05D003249 2.0e-19 100.5 114 46.5
Glyma.06G199700 Glycine max HOM05D002953 ORTHO05D003249 2.7e-19 100.1 218 33.0
Sabra15G0078200 Salix brachista HOM05D002953 ORTHO05D003249 5.9e-19 99.0 234 31.6
SGA_v2.0_scaffold28G11759 Striga asiatica HOM05D004749 ORTHO05D005995 5.9e-19 99.0 218 35.8
Eucgr.B00564 Eucalyptus grandis HOM05D002953 ORTHO05D003249 7.7e-19 98.6 256 32.4
AT5G61280 Arabidopsis thaliana HOM05D002953 ORTHO05D003249 1.0e-18 98.2 276 32.2
Ciclev10024374m.g Citrus clementina HOM05D002953 ORTHO05D003249 1.0e-18 98.2 225 36.4
CiPaw.11G049300 Carya illinoinensis HOM05D002953 ORTHO05D003249 2.2e-18 97.1 283 31.4
Gorai.001G078300 Gossypium raimondii HOM05D002953 ORTHO05D003249 2.2e-18 97.1 221 34.8
CANSAT80G2766 Cannabis sativa HOM05D002953 ORTHO05D003249 3.8e-18 96.3 268 29.1
Gohir.D07G074100 Gossypium hirsutum HOM05D002953 ORTHO05D003249 3.8e-18 96.3 221 35.7
TWI81G0838 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 5.0e-18 95.9 223 31.8
BcaC06g33224 Brassica carinata HOM05D002953 ORTHO05D000365 1.1e-17 94.7 229 33.6
Nn3g17381 Nelumbo nucifera HOM05D002953 ORTHO05D003249 1.5e-17 94.4 105 45.7
Migut.I00340 Erythranthe guttata HOM05D002953 ORTHO05D003249 5.5e-17 92.4 113 46.0
PGR083G0095 Punica granatum HOM05D002953 ORTHO05D003249 1.6e-16 90.9 272 29.8
FAN18G4303 Fragaria x ananassa HOM05D000627 ORTHO05D000365 3.6e-16 89.7 221 33.9
FAN13G1454 Fragaria x ananassa HOM05D000627 ORTHO05D000365 6.1e-16 89.0 216 34.3
FAN08G1545 Fragaria x ananassa HOM05D002953 ORTHO05D000365 1.8e-15 87.4 230 30.4
BcaC06g33164 Brassica carinata HOM05D002953 ORTHO05D003249 3.0e-15 86.7 221 31.7
Duzib068G0795 Durio zibethinus HOM05D002953 ORTHO05D003249 3.0e-15 86.7 107 42.1
Lalb_Chr13g0302991 Lupinus albus HOM05D002953 ORTHO05D003249 5.2e-15 85.9 223 31.8
HanXRQChr02g0035641 Helianthus annuus HOM05D002953 ORTHO05D003249 8.8e-15 85.1 258 33.7
arahy.Tifrunner.gnm1.ann1.90GC30 Arachis hypogaea HOM05D002953 ORTHO05D003249 1.5e-14 84.3 267 28.8
CSS0004001 Camellia sinensis var. sinensis HOM05D002953 ORTHO05D003249 2.0e-14 84.0 276 30.4
AUR62021606 Chenopodium quinoa HOM05D002953 ORTHO05D003249 2.0e-14 84.0 84 65.5
ECA232G4309 Erigeron canadensis HOM05D002953 ORTHO05D003249 2.0e-14 84.0 242 33.1
Thecc.02G335300 Theobroma cacao HOM05D002953 ORTHO05D003249 2.0e-14 84.0 118 42.4
unitig_8.g3188 Utricularia gibba HOM05D002953 ORTHO05D003249 2.0e-14 84.0 118 41.5
QL03p071046 Quercus lobata HOM05D002953 ORTHO05D003249 4.4e-14 82.8 106 42.5
TWI75G0656 Tripterygium wilfordii HOM05D002953 ORTHO05D003249 9.8e-14 81.6 299 27.4
TAR629G0224 Trochodendron aralioides HOM05D002953 ORTHO05D003249 1.3e-13 81.3 219 32.4
Nn4g23349 Nelumbo nucifera HOM05D002953 ORTHO05D003249 2.2e-13 80.5 326 29.1
ECA246G1271 Erigeron canadensis HOM05D000773 ORTHO05D000588 2.8e-13 80.1 170 32.4
Peaxi162Scf00314g00019 Petunia axillaris HOM05D002953 ORTHO05D003249 2.8e-13 80.1 272 29.8
Potri.010G160900 Populus trichocarpa HOM05D002953 ORTHO05D003249 3.7e-13 79.7 107 40.2
Ciclev10033969m.g Citrus clementina HOM05D002953 ORTHO05D003249 6.3e-13 79.0 108 40.7
Rhsim12G0076400 Rhododendron simsii HOM05D002953 ORTHO05D003249 6.3e-13 79.0 110 39.1
Thhalv10004785m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 8.3e-13 78.6 279 31.2
FAN07G2390 Fragaria x ananassa HOM05D000954 ORTHO05D000822 8.3e-13 78.6 134 36.6
COL.COLO4_27923 Corchorus olitorius HOM05D002953 ORTHO05D003249 1.4e-12 77.8 107 41.1
Dinv38775 Davidia involucrata HOM05D000630 ORTHO05D000365 1.8e-12 77.4 186 35.5
CDE10G0450 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 3.1e-12 76.6 281 29.2
FAN22G1160 Fragaria x ananassa HOM05D000954 ORTHO05D003249 3.1e-12 76.6 133 35.3
HPP92_013438 Vanilla planifolia HOM05D002953 ORTHO05D003249 5.4e-12 75.9 122 38.5
Actinidia19918 Actinidia chinensis HOM05D002953 ORTHO05D003249 7.0e-12 75.5 107 38.3
PSO478G1910 Papaver somniferum HOM05D002953 ORTHO05D003249 7.0e-12 75.5 106 38.7
Sopen04g001490 Solanum pennellii HOM05D002953 ORTHO05D003249 7.0e-12 75.5 107 37.4
Gohir.D02G128400 Gossypium hirsutum HOM05D002953 ORTHO05D003249 9.1e-12 75.1 109 40.4
Gorai.005G144100 Gossypium raimondii HOM05D002953 ORTHO05D003249 9.1e-12 75.1 109 40.4
Zm00001eb008420 Zea mays HOM05D002953 ORTHO05D003249 9.1e-12 75.1 107 36.4
Nitab4.5_0000014g0320 Nicotiana tabacum HOM05D002953 ORTHO05D003249 1.2e-11 74.7 107 37.4
Psat7g135400 Pisum sativum HOM05D002953 ORTHO05D003249 1.6e-11 74.3 108 39.8
Gohir.A03G103200 Gossypium hirsutum HOM05D002953 ORTHO05D003249 2.7e-11 73.6 109 39.4
Lsat_1_v5_gn_4_12001 Lactuca sativa HOM05D002953 ORTHO05D003249 2.7e-11 73.6 274 26.3
Zm00001eb233330 Zea mays HOM05D002953 ORTHO05D003249 2.7e-11 73.6 107 35.5
Zm00001eb400390 Zea mays HOM05D002953 ORTHO05D003249 3.5e-11 73.2 107 40.2
Glyma.07G226700 Glycine max HOM05D002953 ORTHO05D003249 4.5e-11 72.8 108 40.7
Nitab4.5_0000334g0300 Nicotiana tabacum HOM05D000954 ORTHO05D000822 4.5e-11 72.8 84 44.0
TPR.G34076 Trifolium pratense HOM05D002953 ORTHO05D003249 4.5e-11 72.8 108 38.9
TAR374G0889 Trochodendron aralioides HOM05D000954 ORTHO05D000822 4.5e-11 72.8 263 26.2
vmacro01327 Vaccinium macrocarpon HOM05D002953 ORTHO05D003249 4.5e-11 72.8 107 39.3
Glyma.20G027100 Glycine max HOM05D002953 ORTHO05D003249 5.9e-11 72.4 108 39.8
CARHR014290 Cardamine hirsuta HOM05D002953 ORTHO05D003249 7.7e-11 72.0 189 29.6
MD14G1208100 Malus domestica HOM05D002953 ORTHO05D003249 7.7e-11 72.0 223 28.7
Sabra10G0122400 Salix brachista HOM05D002953 ORTHO05D003249 1.0e-10 71.6 309 27.2
Hund09847 Selenicereus undatus HOM05D002953 ORTHO05D003249 1.3e-10 71.2 154 40.3
Oeu016226.1 Olea europaea HOM05D002953 ORTHO05D003249 2.2e-10 70.5 115 36.5
Aqoxy3G00465 Aquilegia oxysepala HOM05D002953 ORTHO05D003249 3.8e-10 69.7 301 25.9
Lalb_Chr17g0341061 Lupinus albus HOM05D002953 ORTHO05D003249 3.8e-10 69.7 107 37.4
Glyma.01G056000 Glycine max HOM05D002953 ORTHO05D003249 5.0e-10 69.3 266 25.9
VMungo1215G1853 Vigna mungo HOM05D002953 ORTHO05D003249 5.0e-10 69.3 235 27.2
Ca_18812_v3 Cicer arietinum L. HOM05D002953 ORTHO05D003249 6.5e-10 68.9 108 38.0
MD13G1065400 Malus domestica HOM05D002953 ORTHO05D003249 6.5e-10 68.9 106 33.0
Medtr4g082910 Medicago truncatula HOM05D002953 ORTHO05D003249 6.5e-10 68.9 107 37.4
Nitab4.5_0002806g0030 Nicotiana tabacum HOM05D000001 ORTHO05D000003 6.5e-10 68.9 115 33.9
Sp1g12040 Schrenkiella parvula HOM05D002953 ORTHO05D003249 8.5e-10 68.6 115 39.1
SGA_v2.0_scaffold16G07764 Striga asiatica HOM05D002953 ORTHO05D003249 8.5e-10 68.6 120 35.8
TPR.G24432 Trifolium pratense HOM05D002953 ORTHO05D003249 1.1e-09 68.2 109 37.6
BraA03t13810Z Brassica rapa HOM05D000627 ORTHO05D000365 1.5e-09 67.8 278 27.7
FvH4_4g30432 Fragaria vesca HOM05D002953 ORTHO05D003249 1.5e-09 67.8 108 36.1
Lj6C782G17 Lonicera japonica HOM05D002953 ORTHO05D003249 1.5e-09 67.8 106 37.7
THA.LOC104807117 Tarenaya hassleriana HOM05D002953 ORTHO05D003249 1.5e-09 67.8 122 37.7
BolC7t45018H Brassica oleracea HOM05D000627 ORTHO05D000365 1.9e-09 67.4 285 28.8
Phvul.002G168100 Phaseolus vulgaris HOM05D002953 ORTHO05D003249 1.9e-09 67.4 108 38.0
Ah.03g139130 Amaranthus hybridus HOM05D002953 ORTHO05D003249 2.5e-09 67.0 136 35.3
BcaC05g25290 Brassica carinata HOM05D002953 ORTHO05D003249 2.5e-09 67.0 294 27.6
Lj4g0014446 Lotus japonicus HOM05D002953 ORTHO05D003249 2.5e-09 67.0 107 37.4
C07p44950 Brassica napus HOM05D000627 ORTHO05D000365 3.2e-09 66.6 268 29.1
Lsat_1_v5_gn_4_110061 Lactuca sativa HOM05D002953 ORTHO05D003249 3.2e-09 66.6 89 42.7
Atru.chr11.1683 Acer truncatum HOM05D002953 ORTHO05D003249 5.5e-09 65.9 109 33.0
Carub.0008s2196 Capsella rubella HOM05D002953 ORTHO05D003249 5.5e-09 65.9 273 29.3
Zm00001eb225120 Zea mays HOM05D002953 ORTHO05D003249 5.5e-09 65.9 106 39.6
Lsat_1_v5_gn_3_56140 Lactuca sativa HOM05D002953 ORTHO05D003249 7.2e-09 65.5 144 29.9
Thhalv10009533m.g Eutrema salsugineum HOM05D002953 ORTHO05D003249 9.4e-09 65.1 115 36.5
Os03g0211500 Oryza sativa ssp. japonica HOM05D002953 ORTHO05D003249 9.4e-09 65.1 107 37.4
Potri.008G093300 Populus trichocarpa HOM05D002953 ORTHO05D003249 1.2e-08 64.7 227 28.6
Cpa.g.sc1.99 Carica papaya HOM05D002953 ORTHO05D003249 2.1e-08 63.9 275 26.5
Sopen05g007380 Solanum pennellii HOM05D002953 ORTHO05D003249 2.1e-08 63.9 119 31.9
CDE05G2801 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 2.7e-08 63.5 97 38.1
BcaC07g38708 Brassica carinata HOM05D002953 ORTHO05D003249 4.7e-08 62.8 107 35.5
C08p16380 Brassica napus HOM05D002953 ORTHO05D003249 4.7e-08 62.8 107 35.5
BolC8t49262H Brassica oleracea HOM05D002953 ORTHO05D003249 4.7e-08 62.8 107 35.5
CANSAT64G0943 Cannabis sativa HOM05D002953 ORTHO05D003249 6.1e-08 62.4 114 33.3
Eucgr.B03177 Eucalyptus grandis HOM05D002953 ORTHO05D003249 6.1e-08 62.4 107 30.8
MD16G1063900 Malus domestica HOM05D002953 ORTHO05D003249 8.0e-08 62.0 108 33.3
Aa31LG1G1100 Aethionema arabicum HOM05D002953 ORTHO05D003249 1.0e-07 61.6 322 26.1
ClCG05G023850 Citrullus lanatus HOM05D002953 ORTHO05D003249 1.0e-07 61.6 114 36.0
PSO017G2547 Papaver somniferum HOM05D002953 ORTHO05D003249 1.0e-07 61.6 106 35.8
CsaV3_5G033170 Cucumis sativus L. HOM05D000954 ORTHO05D000822 1.4e-07 61.2 115 37.4
ATR0064G077 Amborella trichopoda HOM05D002953 ORTHO05D003249 2.3e-07 60.5 290 28.6
CiPaw.05G127400 Carya illinoinensis HOM05D002953 ORTHO05D003249 2.3e-07 60.5 337 28.2
A08p32200 Brassica napus HOM05D002953 ORTHO05D003249 3.0e-07 60.1 321 25.5
BraA08t35143Z Brassica rapa HOM05D002953 ORTHO05D003249 3.0e-07 60.1 321 25.5
AUR62007948 Chenopodium quinoa HOM05D002953 ORTHO05D003249 4.0e-07 59.7 136 31.6
Glyma.17G076300 Glycine max HOM05D002953 ORTHO05D003249 4.0e-07 59.7 265 28.7
MELO3C012137.2 Cucumis melo HOM05D002953 ORTHO05D003249 6.8e-07 58.9 112 34.8
Sp5g24380 Schrenkiella parvula HOM05D002953 ORTHO05D003249 8.8e-07 58.5 116 31.0
Nitab4.5_0004304g0070 Nicotiana tabacum HOM05D000954 ORTHO05D000822 1.2e-06 58.2 62 41.9
Sabra08G0070100 Salix brachista HOM05D002953 ORTHO05D003249 1.2e-06 58.2 228 25.9
VMungo0251G2769 Vigna mungo HOM05D002953 ORTHO05D003249 1.2e-06 58.2 301 26.2
AL2G28430 Arabidopsis lyrata HOM05D002953 ORTHO05D003249 2.0e-06 57.4 115 30.4
A03p46900 Brassica napus HOM05D000627 ORTHO05D000365 2.6e-06 57.0 116 33.6
Carub.0002s1592 Capsella rubella HOM05D002953 ORTHO05D003249 2.6e-06 57.0 101 30.7
arahy.Tifrunner.gnm1.ann1.FH6P3F Arachis hypogaea HOM05D002953 ORTHO05D003249 3.4e-06 56.6 115 31.3
C06p40600 Brassica napus HOM05D002953 ORTHO05D003249 3.4e-06 56.6 116 31.9
AUR62003129 Chenopodium quinoa HOM05D002953 ORTHO05D003249 4.4e-06 56.2 148 29.7
CDE10G0453 Ceratophyllum demersum HOM05D002953 ORTHO05D003249 5.7e-06 55.8 317 24.3
TPR.G12280 Trifolium pratense HOM05D002953 ORTHO05D003249 5.7e-06 55.8 158 32.9
CARHR062210 Cardamine hirsuta HOM05D002953 ORTHO05D003249 7.5e-06 55.5 115 31.3


User provided reference genes

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