Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047980 Amaranthus hybridus HOM05D006238 ORTHO05D007458 1.9e-57 226.1 159 100.0
Nn4g23380 Nelumbo nucifera HOM05D006238 ORTHO05D007458 1.4e-12 77.0 98 48.0
AUR62008501 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.5e-09 67.0 70 50.0
EL10Ac5g11104 Beta vulgaris HOM05D006238 ORTHO05D007458 2.5e-09 66.2 70 47.1
Os03g0212200 Oryza sativa ssp. japonica HOM05D006238 ORTHO05D007458 5.6e-09 65.1 70 44.3
Cfa019307 Carpinus fangiana HOM05D006238 ORTHO05D007458 9.6e-09 64.3 70 47.1
Haze_07689 Corylus avellana HOM05D006238 ORTHO05D007458 9.6e-09 64.3 70 47.1
AUR62021591 Chenopodium quinoa HOM05D006238 ORTHO05D007458 1.3e-08 63.9 33 93.9
FvH4_5g14250 Fragaria vesca HOM05D006238 ORTHO05D007458 1.3e-08 63.9 70 47.1
PSO017G1619 Papaver somniferum HOM05D006238 ORTHO05D007458 1.6e-08 63.5 70 45.7
CSS0008812 Camellia sinensis var. sinensis HOM05D006238 ORTHO05D007458 2.1e-08 63.2 70 48.6
Migut.L00004 Erythranthe guttata HOM05D006238 ORTHO05D007458 2.1e-08 63.2 70 48.6
PGR044G1626 Punica granatum HOM05D006238 ORTHO05D007458 2.1e-08 63.2 70 47.1
Actinidia35026 Actinidia chinensis HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 48.6
Aqoxy3G00445 Aquilegia oxysepala HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 42.9
ClCG06G015770 Citrullus lanatus HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 45.7
MELO3C017212.2 Cucumis melo HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 45.7
CsaV3_1G002770 Cucumis sativus L. HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 45.7
HanXRQChr14g0439161 Helianthus annuus HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 45.7
Oeu062485.1 Olea europaea HOM05D006238 ORTHO05D007458 3.6e-08 62.4 70 48.6
MSTRG.22972 Avicennia marina HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 48.6
Duzib205G0643 Durio zibethinus HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 45.7
Gohir.A09G243100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 45.7
Gohir.D09G243800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 45.7
Gorai.006G267600 Gossypium raimondii HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 45.7
PSO478G4259 Papaver somniferum HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 44.3
Hund02602 Selenicereus undatus HOM05D006238 ORTHO05D007458 4.8e-08 62.0 70 47.1
Migut.I00441 Erythranthe guttata HOM05D006238 ORTHO05D007458 6.2e-08 61.6 70 47.1
Potri.015G048800 Populus trichocarpa HOM05D006238 ORTHO05D007458 6.2e-08 61.6 70 45.7
Prupe.5G201600 Prunus persica HOM05D006238 ORTHO05D007458 6.2e-08 61.6 70 47.1
Sc10g0009770 Simmondsia chinensis HOM05D006238 ORTHO05D007458 6.2e-08 61.6 70 47.1
arahy.Tifrunner.gnm1.ann1.G7J9WL Arachis hypogaea HOM05D006238 ORTHO05D007458 8.1e-08 61.2 70 44.3
arahy.Tifrunner.gnm1.ann1.XMW6VU Arachis hypogaea HOM05D006238 ORTHO05D007458 8.1e-08 61.2 70 44.3
Cpa.g.sc94.13 Carica papaya HOM05D006238 ORTHO05D007458 8.1e-08 61.2 70 45.7
Oeu038367.1 Olea europaea HOM05D006238 ORTHO05D007458 8.1e-08 61.2 70 45.7
Solyc12g040320.2 Solanum lycopersicum HOM05D006238 ORTHO05D007458 8.1e-08 61.2 70 47.1
Thecc.03G097700 Theobroma cacao HOM05D006238 ORTHO05D007458 8.1e-08 61.2 69 46.4
CANSAT80G2720 Cannabis sativa HOM05D006238 ORTHO05D007458 1.1e-07 60.8 70 47.1
COL.COLO4_22216 Corchorus olitorius HOM05D006238 ORTHO05D007458 1.1e-07 60.8 70 45.7
Lsat_1_v5_gn_4_110280 Lactuca sativa HOM05D006238 ORTHO05D007458 1.1e-07 60.8 70 42.9
Sed0022301 Sechium edule HOM05D006238 ORTHO05D007458 1.1e-07 60.8 70 45.7
QL10p018767 Quercus lobata HOM05D006238 ORTHO05D007458 1.4e-07 60.5 70 44.3
QL93p0191_0017 Quercus lobata HOM05D006238 ORTHO05D007458 1.4e-07 60.5 70 44.3
RcHm_v2.0_Chr7g0182671 Rosa chinensis HOM05D006238 ORTHO05D007458 1.4e-07 60.5 70 44.3
Glyma.04G164100 Glycine max HOM05D006238 ORTHO05D007458 1.8e-07 60.1 70 44.3
Glyma.06G201600 Glycine max HOM05D006238 ORTHO05D007458 1.8e-07 60.1 70 44.3
Medtr3g023830 Medicago truncatula HOM05D006238 ORTHO05D007458 1.8e-07 60.1 70 41.4
Zm00001eb008470 Zea mays HOM05D006238 ORTHO05D007458 1.8e-07 60.1 78 41.0
HanXRQChr02g0042551 Helianthus annuus HOM05D006238 ORTHO05D007458 2.4e-07 59.7 70 42.9
Lj1g0017158 Lotus japonicus HOM05D006238 ORTHO05D007458 3.1e-07 59.3 70 44.3
CiPaw.11G050500 Carya illinoinensis HOM05D006238 ORTHO05D007458 4.0e-07 58.9 70 42.9
Ca_13804_v3 Cicer arietinum L. HOM05D006238 ORTHO05D007458 5.3e-07 58.5 70 42.9
Eucgr.K02503 Eucalyptus grandis HOM05D006238 ORTHO05D007458 5.3e-07 58.5 70 45.7
Psat5g211960 Pisum sativum HOM05D006238 ORTHO05D007458 5.3e-07 58.5 70 41.4
Sopen12g019730 Solanum pennellii HOM05D006238 ORTHO05D007458 5.3e-07 58.5 70 44.3
HPP92_013436 Vanilla planifolia HOM05D001674 ORTHO05D008374 5.3e-07 58.5 70 44.3
MD06G1200000 Malus domestica HOM05D006238 ORTHO05D007458 6.9e-07 58.2 53 60.4
MD14G1209200 Malus domestica HOM05D006238 ORTHO05D007458 6.9e-07 58.2 70 44.3
TPR.G12219 Trifolium pratense HOM05D006238 ORTHO05D007458 6.9e-07 58.2 70 42.9
GSVIVG01007912001 Vitis vinifera HOM05D006238 ORTHO05D007458 6.9e-07 58.2 70 42.9
Lalb_Chr08g0238951 Lupinus albus HOM05D006238 ORTHO05D007458 9.0e-07 57.8 70 42.9
TWI81G0503 Tripterygium wilfordii HOM05D006238 ORTHO05D007458 9.0e-07 57.8 70 41.4
Ciclev10021749m.g Citrus clementina HOM05D006238 ORTHO05D007458 2.0e-06 56.6 70 40.0
ECA232G0231 Erigeron canadensis HOM05D000954 ORTHO05D000822 2.0e-06 56.6 71 43.7
Rhsim12G0152200 Rhododendron simsii HOM05D006238 ORTHO05D007458 2.0e-06 56.6 33 81.8
Gohir.D12G183800 Gossypium hirsutum HOM05D006238 ORTHO05D007458 2.6e-06 56.2 70 42.9
Sabra15G0078500 Salix brachista HOM05D006238 ORTHO05D007458 4.5e-06 55.5 33 75.8
vmacro16511 Vaccinium macrocarpon HOM05D006238 ORTHO05D007458 4.5e-06 55.5 33 78.8
Gohir.A12G181100 Gossypium hirsutum HOM05D006238 ORTHO05D007458 5.8e-06 55.1 70 41.4
AT5G07910 Arabidopsis thaliana HOM05D006238 ORTHO05D007458 7.6e-06 54.7 71 42.3
BcaB05g21597 Brassica carinata HOM05D006238 ORTHO05D007458 7.6e-06 54.7 71 42.3
C03p03970 Brassica napus HOM05D006238 ORTHO05D007458 7.6e-06 54.7 68 41.2
Carub.0006s0680 Capsella rubella HOM05D006238 ORTHO05D007458 7.6e-06 54.7 71 42.3
Thhalv10014418m.g Eutrema salsugineum HOM05D006238 ORTHO05D007458 7.6e-06 54.7 71 40.8
Aa31LG3G18600 Aethionema arabicum HOM05D006238 ORTHO05D007458 9.9e-06 54.3 71 42.3
BcaNung04724 Brassica carinata HOM05D006238 ORTHO05D007458 9.9e-06 54.3 71 42.3


User provided reference genes

Program Settings