Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047710 Amaranthus hybridus HOM05D003094 ORTHO05D003482 5.6e-71 271.2 173 100.0
EL10Ac5g11481 Beta vulgaris HOM05D003094 ORTHO05D003482 1.0e-19 100.9 95 55.8
Hund02353 Selenicereus undatus HOM05D003094 ORTHO05D003482 3.6e-17 92.4 99 53.5
Atru.chr9.906 Acer truncatum HOM05D003094 ORTHO05D003482 1.8e-16 90.1 112 48.2
Sc10g0009380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 8.8e-16 87.8 105 48.6
Dinv17506 Davidia involucrata HOM05D003094 ORTHO05D003482 5.7e-15 85.1 112 48.2
vmacro16434 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 2.8e-14 82.8 111 50.5
AUR62029914 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.1e-13 79.3 66 56.1
Gorai.001G067600 Gossypium raimondii HOM05D003094 ORTHO05D003482 5.4e-13 78.6 65 60.0
Dinv07353 Davidia involucrata HOM05D003094 ORTHO05D003482 7.0e-13 78.2 120 42.5
Dinv09627 Davidia involucrata HOM05D003094 ORTHO05D003482 9.1e-13 77.8 120 42.5
Gohir.A07G059300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-12 77.4 65 58.5
Gohir.D07G064100 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.6e-12 77.0 65 58.5
Phvul.002G182800 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 1.0e-11 74.3 69 52.2
AUR62033800 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.7e-11 73.6 66 53.0
Rhsim12G0141600 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.7e-11 73.6 81 51.9
CiPaw.16G089100 Carya illinoinensis HOM05D003094 ORTHO05D003482 2.9e-11 72.8 109 41.3
Actinidia35101 Actinidia chinensis HOM05D003094 ORTHO05D003482 3.8e-11 72.4 81 49.4
Sed0019035 Sechium edule HOM05D003094 ORTHO05D003482 3.8e-11 72.4 111 42.3
TWI81G0976 Tripterygium wilfordii HOM05D003094 ORTHO05D003482 5.0e-11 72.0 78 51.3
GSVIVG01008338001 Vitis vinifera HOM05D003094 ORTHO05D003482 1.5e-10 70.5 101 44.6
CsaV3_1G006930 Cucumis sativus L. HOM05D003094 ORTHO05D003482 1.9e-10 70.1 86 52.3
VMungo0251G1973 Vigna mungo HOM05D003094 ORTHO05D003482 1.9e-10 70.1 69 49.3
ECA233G5083 Erigeron canadensis HOM05D003094 ORTHO05D003482 2.5e-10 69.7 73 50.7
HanXRQChr17g0558961 Helianthus annuus HOM05D003094 ORTHO05D003482 2.5e-10 69.7 77 49.4
BcaB05g24812 Brassica carinata HOM05D003094 ORTHO05D003482 3.2e-10 69.3 77 54.5
AUR62042498 Chenopodium quinoa HOM05D003094 ORTHO05D003482 3.2e-10 69.3 86 46.5
Haze_18734 Corylus avellana HOM05D003094 ORTHO05D003482 3.2e-10 69.3 63 52.4
Gorai.002G151500 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.2e-10 69.3 48 64.6
MBI16_g44830_MAGBIO Magnolia biondii HOM05D003094 ORTHO05D003482 3.2e-10 69.3 117 41.0
RcHm_v2.0_Chr2g0128201 Rosa chinensis HOM05D003094 ORTHO05D003482 3.2e-10 69.3 133 39.1
Gohir.A13G146900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.2e-10 68.9 105 41.9
Cfa019732 Carpinus fangiana HOM05D003094 ORTHO05D003482 5.5e-10 68.6 142 35.2
THA.LOC104812151 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 5.5e-10 68.6 106 44.3
FvH4_5g16690 Fragaria vesca HOM05D003094 ORTHO05D003482 7.2e-10 68.2 95 44.2
FAN13G1164 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.2e-10 68.2 95 44.2
FAN18G0043 Fragaria x ananassa HOM05D003094 ORTHO05D003482 7.2e-10 68.2 95 44.2
SHI53281 Sapria himalayana HOM05D003094 ORTHO05D003482 7.2e-10 68.2 101 42.6
Hund11930 Selenicereus undatus HOM05D003094 ORTHO05D003482 7.2e-10 68.2 97 47.4
CSS0029576 Camellia sinensis var. sinensis HOM05D003094 ORTHO05D003482 9.4e-10 67.8 84 45.2
COL.COLO4_38537 Corchorus olitorius HOM05D003094 ORTHO05D003482 9.4e-10 67.8 54 55.6
CsaV3_1G004020 Cucumis sativus L. HOM05D003094 ORTHO05D003482 9.4e-10 67.8 71 49.3
FAN08G1507 Fragaria x ananassa HOM05D003094 ORTHO05D003482 9.4e-10 67.8 111 39.6
QL10p026547 Quercus lobata HOM05D003094 ORTHO05D003482 9.4e-10 67.8 67 47.8
Sc04g0003380 Simmondsia chinensis HOM05D003094 ORTHO05D003482 9.4e-10 67.8 91 50.5
ClCG04G010900 Citrullus lanatus HOM05D003094 ORTHO05D003482 1.2e-09 67.4 90 43.3
Duzib084G0458 Durio zibethinus HOM05D003094 ORTHO05D003482 1.2e-09 67.4 107 42.1
Gohir.A02G112001 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.2e-09 67.4 62 50.0
Lsat_1_v5_gn_8_141460 Lactuca sativa HOM05D003094 ORTHO05D003482 1.2e-09 67.4 92 42.4
Atru.chr9.905 Acer truncatum HOM05D003094 ORTHO05D003482 1.6e-09 67.0 97 43.3
BraA02t06932Z Brassica rapa HOM05D003094 ORTHO05D003482 1.6e-09 67.0 94 47.9
Gohir.D13G152004 Gossypium hirsutum HOM05D003094 ORTHO05D003482 2.1e-09 66.6 117 41.0
Thhalv10019822m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.7e-09 66.2 75 49.3
Gorai.001G159100 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.7e-09 66.2 66 47.0
Gorai.013G170500 Gossypium raimondii HOM05D003094 ORTHO05D003482 2.7e-09 66.2 116 38.8
MELO3C002109.2 Cucumis melo HOM05D003094 ORTHO05D003482 3.6e-09 65.9 86 51.2
Actinidia36579 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.7e-09 65.5 68 50.0
C02p31410 Brassica napus HOM05D003094 ORTHO05D003482 4.7e-09 65.5 85 47.1
Cpa.g.sc51.5 Carica papaya HOM05D003094 ORTHO05D003482 4.7e-09 65.5 104 41.3
ClCG06G014600 Citrullus lanatus HOM05D003094 ORTHO05D003482 4.7e-09 65.5 113 39.8
Gorai.012G098500 Gossypium raimondii HOM05D000575 ORTHO05D003482 4.7e-09 65.5 62 48.4
FvH4_6g26830 Fragaria vesca HOM05D003094 ORTHO05D003482 6.1e-09 65.1 105 39.0
Gohir.D10G153150 Gossypium hirsutum HOM05D003094 ORTHO05D003482 6.1e-09 65.1 62 48.4
Nitab4.5_0001986g0080 Nicotiana tabacum HOM05D003094 ORTHO05D003482 6.1e-09 65.1 113 38.1
CiPaw.16G089200 Carya illinoinensis HOM05D003094 ORTHO05D003482 8.0e-09 64.7 104 40.4
Ciclev10023622m.g Citrus clementina HOM05D003094 ORTHO05D003482 8.0e-09 64.7 105 41.0
FAN14G2495 Fragaria x ananassa HOM05D003094 ORTHO05D003482 8.0e-09 64.7 105 39.0
MD06G1220500 Malus domestica HOM05D003094 ORTHO05D003482 8.0e-09 64.7 106 36.8
arahy.Tifrunner.gnm1.ann1.J45ZPD Arachis hypogaea HOM05D003094 ORTHO05D003482 1.0e-08 64.3 113 40.7
CANSAT80G1577 Cannabis sativa HOM05D003094 ORTHO05D003482 1.0e-08 64.3 99 39.4
AUR62040348 Chenopodium quinoa HOM05D003094 ORTHO05D003482 1.0e-08 64.3 50 56.0
Gohir.A13G146300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-08 64.3 117 39.3
Gohir.D13G151300 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.0e-08 64.3 116 37.9
Rhsim10G0183200 Rhododendron simsii HOM05D003094 ORTHO05D003482 1.0e-08 64.3 129 41.1
RcHm_v2.0_Chr7g0179411 Rosa chinensis HOM05D003094 ORTHO05D003482 1.0e-08 64.3 76 46.1
AL2G33580 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 1.4e-08 63.9 94 42.6
EL10Ac7g16627 Beta vulgaris HOM05D003094 ORTHO05D003482 1.4e-08 63.9 88 44.3
Carub.0002s2052 Capsella rubella HOM05D003094 ORTHO05D003482 1.4e-08 63.9 91 45.1
TAR374G0309 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.4e-08 63.9 122 40.2
AT3G18240 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 1.8e-08 63.5 113 38.9
arahy.Tifrunner.gnm1.ann1.2IG2A1 Arachis hypogaea HOM05D003094 ORTHO05D003482 1.8e-08 63.5 92 42.4
BcaC03g15460 Brassica carinata HOM05D003094 ORTHO05D003482 1.8e-08 63.5 94 46.8
A02p18880 Brassica napus HOM05D003094 ORTHO05D003482 1.8e-08 63.5 114 44.7
BolC2t09174H Brassica oleracea HOM05D003094 ORTHO05D003482 1.8e-08 63.5 94 46.8
MELO3C017325.2 Cucumis melo HOM05D003094 ORTHO05D003482 1.8e-08 63.5 117 40.2
Gohir.D07G182700 Gossypium hirsutum HOM05D003094 ORTHO05D003482 1.8e-08 63.5 63 47.6
Hma1.2p1_1283F.1_g272860 Hydrangea macrophylla HOM05D003094 ORTHO05D003482 1.8e-08 63.5 79 49.4
TAR374G0733 Trochodendron aralioides HOM05D003094 ORTHO05D003482 1.8e-08 63.5 122 40.2
AL3G31470 Arabidopsis lyrata HOM05D003094 ORTHO05D003482 2.3e-08 63.2 109 41.3
FAN02G1016 Fragaria x ananassa HOM05D003094 ORTHO05D003482 2.3e-08 63.2 105 38.1
Glyma.05G139400 Glycine max HOM05D003094 ORTHO05D003482 2.3e-08 63.2 70 47.1
Lj4g0013095 Lotus japonicus HOM05D003094 ORTHO05D003482 2.3e-08 63.2 72 45.8
Sp5g28960 Schrenkiella parvula HOM05D003094 ORTHO05D003482 2.3e-08 63.2 95 44.2
THA.LOC104820380 Tarenaya hassleriana HOM05D003094 ORTHO05D003482 2.3e-08 63.2 122 33.6
EL10Ac4g10181 Beta vulgaris HOM05D003094 ORTHO05D003482 3.0e-08 62.8 88 42.0
Gorai.013G169300 Gossypium raimondii HOM05D003094 ORTHO05D003482 3.0e-08 62.8 98 44.9
Lj9A424T34 Lonicera japonica HOM05D003094 ORTHO05D003482 3.0e-08 62.8 62 48.4
Actinidia19943 Actinidia chinensis HOM05D003094 ORTHO05D003482 4.0e-08 62.4 83 44.6
Gohir.D05G318800 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.0e-08 62.4 66 45.5
Manes.01G015200 Manihot esculenta HOM05D003094 ORTHO05D003482 4.0e-08 62.4 85 48.2
arahy.Tifrunner.gnm1.ann1.D1K70W Arachis hypogaea HOM05D003094 ORTHO05D003482 5.2e-08 62.0 104 39.4
Ca_11586_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 5.2e-08 62.0 102 43.1
MD14G1229900 Malus domestica HOM05D003094 ORTHO05D003482 5.2e-08 62.0 102 36.3
Prupe.5G225000 Prunus persica HOM05D003094 ORTHO05D003482 5.2e-08 62.0 94 40.4
ATR0757G079 Amborella trichopoda HOM05D003094 ORTHO05D003482 6.8e-08 61.6 92 39.1
FAN05G2182 Fragaria x ananassa HOM05D003094 ORTHO05D003482 6.8e-08 61.6 105 37.1
Gorai.003G056600 Gossypium raimondii HOM05D003094 ORTHO05D003482 6.8e-08 61.6 103 39.8
Manes.05G133000 Manihot esculenta HOM05D003094 ORTHO05D003482 6.8e-08 61.6 118 39.0
AT4G21460 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 8.8e-08 61.2 113 38.1
Psat7g083520 Pisum sativum HOM05D003094 ORTHO05D003482 8.8e-08 61.2 86 45.3
Sed0020442 Sechium edule HOM05D003094 ORTHO05D003482 8.8e-08 61.2 106 36.8
CAN.G1129.14 Capsicum annuum HOM05D003094 ORTHO05D003482 1.2e-07 60.8 112 34.8
FAN04G1950 Fragaria x ananassa HOM05D003094 ORTHO05D003482 1.2e-07 60.8 89 43.8
HanXRQChr06g0180771 Helianthus annuus HOM05D003094 ORTHO05D003482 1.2e-07 60.8 49 55.1
Solyc03g119160.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 1.2e-07 60.8 94 39.4
CARHR066840 Cardamine hirsuta HOM05D003094 ORTHO05D003482 1.5e-07 60.5 83 43.4
Dinv12225 Davidia involucrata HOM05D003094 ORTHO05D003482 1.5e-07 60.5 112 38.4
Potri.015G044100 Populus trichocarpa HOM05D003094 ORTHO05D003482 1.5e-07 60.5 117 38.5
PGSC0003DMG401005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 1.5e-07 60.5 104 40.4
Ca_25471_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.0e-07 60.1 67 49.3
Ca_29690_v3 Cicer arietinum L. HOM05D003094 ORTHO05D003482 2.0e-07 60.1 67 49.3
Thhalv10020806m.g Eutrema salsugineum HOM05D003094 ORTHO05D003482 2.0e-07 60.1 112 37.5
Phvul.004G153600 Phaseolus vulgaris HOM05D003094 ORTHO05D003482 2.0e-07 60.1 111 37.8
TPR.G25985 Trifolium pratense HOM05D003094 ORTHO05D003482 2.0e-07 60.1 92 43.5
BraA05t21983Z Brassica rapa HOM05D003094 ORTHO05D003482 2.6e-07 59.7 115 38.3
Carub.0003s1800 Capsella rubella HOM05D003094 ORTHO05D003482 2.6e-07 59.7 115 40.0
A05p31440 Brassica napus HOM05D003094 ORTHO05D003482 3.4e-07 59.3 115 38.3
Glyma.08G094700 Glycine max HOM05D003094 ORTHO05D003482 3.4e-07 59.3 80 43.8
Peaxi162Scf00683g00019 Petunia axillaris HOM05D003094 ORTHO05D003482 3.4e-07 59.3 114 40.4
QL10p026559 Quercus lobata HOM05D003094 ORTHO05D003482 3.4e-07 59.3 89 44.9
Thecc.07G091700 Theobroma cacao HOM05D003094 ORTHO05D003482 3.4e-07 59.3 111 34.2
vmacro07219 Vaccinium macrocarpon HOM05D003094 ORTHO05D003482 3.4e-07 59.3 137 34.3
arahy.Tifrunner.gnm1.ann1.53L2ET Arachis hypogaea HOM05D010130 ORTHO05D010480 4.4e-07 58.9 121 38.8
Gohir.D08G096900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.4e-07 58.9 103 36.9
Psat1g035120 Pisum sativum HOM05D003094 ORTHO05D003482 4.4e-07 58.9 101 41.6
Ciclev10020325m.g Citrus clementina HOM05D003094 ORTHO05D003482 5.7e-07 58.5 139 34.5
COL.COLO4_27184 Corchorus olitorius HOM05D003094 ORTHO05D003482 5.7e-07 58.5 95 41.1
Eucgr.K02236 Eucalyptus grandis HOM05D003094 ORTHO05D003482 5.7e-07 58.5 124 34.7
Glyma.09G180400 Glycine max HOM05D003094 ORTHO05D003482 5.7e-07 58.5 104 38.5
TPR.G35824 Trifolium pratense HOM05D003094 ORTHO05D003482 5.7e-07 58.5 87 42.5
Aa31LG4G4100 Aethionema arabicum HOM05D003094 ORTHO05D003482 7.5e-07 58.2 67 47.8
Peaxi162Scf00683g00159 Petunia axillaris HOM05D003094 ORTHO05D003482 7.5e-07 58.2 68 44.1
CAN.G1129.13 Capsicum annuum HOM05D003094 ORTHO05D003482 9.8e-07 57.8 134 37.3
Duzib213G0897 Durio zibethinus HOM05D003094 ORTHO05D003482 9.8e-07 57.8 136 33.8
Medtr6g082590 Medicago truncatula HOM05D003094 ORTHO05D003482 9.8e-07 57.8 100 40.0
Nitab4.5_0004955g0040 Nicotiana tabacum HOM05D003094 ORTHO05D003482 9.8e-07 57.8 100 40.0
unitig_21.g20424 Utricularia gibba HOM05D003094 ORTHO05D003482 9.8e-07 57.8 107 40.2
Nitab4.5_0001986g0070 Nicotiana tabacum HOM05D003094 ORTHO05D003482 1.3e-06 57.4 109 39.4
PSO017G6706 Papaver somniferum HOM05D003094 ORTHO05D003482 1.3e-06 57.4 108 38.0
PSO063G0897 Papaver somniferum HOM05D003094 ORTHO05D003482 1.3e-06 57.4 108 38.0
VMungo0464G0085 Vigna mungo HOM05D013688 ORTHO05D013355 1.3e-06 57.4 89 40.4
Sopen03g038050 Solanum pennellii HOM05D003094 ORTHO05D003482 1.7e-06 57.0 94 39.4
PGR044G0078 Punica granatum HOM05D003094 ORTHO05D003482 2.2e-06 56.6 117 34.2
Cc04_g06850 Coffea canephora HOM05D003094 ORTHO05D003482 2.8e-06 56.2 108 39.8
TPR.G5116 Trifolium pratense HOM05D003094 ORTHO05D003482 2.8e-06 56.2 48 47.9
AT1G73770 Arabidopsis thaliana HOM05D003094 ORTHO05D003482 3.7e-06 55.8 82 42.7
MD06G1220600 Malus domestica HOM05D003094 ORTHO05D003482 3.7e-06 55.8 94 38.3
Solyc03g119170.3 Solanum lycopersicum HOM05D003094 ORTHO05D003482 3.7e-06 55.8 118 35.6
Sopen03g038060 Solanum pennellii HOM05D003094 ORTHO05D003482 3.7e-06 55.8 118 35.6
Cpa.g.sc3.463 Carica papaya HOM05D003094 ORTHO05D003482 4.9e-06 55.5 100 44.0
Gohir.D09G047900 Gossypium hirsutum HOM05D003094 ORTHO05D003482 4.9e-06 55.5 109 36.7
PGSC0003DMG402005733 Solanum tuberosum HOM05D003094 ORTHO05D003482 4.9e-06 55.5 97 40.2
Cc04_g06860 Coffea canephora HOM05D003094 ORTHO05D003482 8.3e-06 54.7 114 35.1


User provided reference genes

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