Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047700 Amaranthus hybridus HOM05D006996 ORTHO05D008961 4.0e-50 201.1 97 100.0
EL10Ac5g11141 Beta vulgaris HOM05D006996 ORTHO05D008961 4.7e-43 177.6 99 87.9
AUR62000730 Chenopodium quinoa HOM05D006996 ORTHO05D008961 5.2e-42 174.1 97 84.5
AUR62021549 Chenopodium quinoa HOM05D006996 ORTHO05D008961 6.9e-42 173.7 97 83.5
Cc05_g04850 Coffea canephora HOM05D006996 ORTHO05D008961 1.5e-41 172.6 83 89.2
Hund01114 Selenicereus undatus HOM05D006996 ORTHO05D008961 2.6e-41 171.8 83 91.6
Dinv39702 Davidia involucrata HOM05D006996 ORTHO05D008961 3.4e-41 171.4 83 89.2
Solyc07g052420.3 Solanum lycopersicum HOM05D006996 ORTHO05D008961 9.9e-41 169.9 83 89.2
GSVIVG01012649001 Vitis vinifera HOM05D006996 ORTHO05D008961 9.9e-41 169.9 83 89.2
ClCG02G001860 Citrullus lanatus HOM05D006996 ORTHO05D008961 1.3e-40 169.5 83 89.2
PGSC0003DMG400025488 Solanum tuberosum HOM05D006996 ORTHO05D008961 1.3e-40 169.5 83 88.0
QL08p033312 Quercus lobata HOM05D006996 ORTHO05D008961 1.7e-40 169.1 82 90.2
CSS0007447 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 2.2e-40 168.7 94 80.9
Oeu027249.1 Olea europaea HOM05D006996 ORTHO05D008961 2.2e-40 168.7 82 89.0
Gohir.A02G139400 Gossypium hirsutum HOM05D006996 ORTHO05D008961 2.9e-40 168.3 83 88.0
Gohir.D03G050100 Gossypium hirsutum HOM05D006996 ORTHO05D008961 2.9e-40 168.3 83 88.0
Gorai.003G051600 Gossypium raimondii HOM05D006996 ORTHO05D008961 2.9e-40 168.3 83 88.0
PGR042G2836 Punica granatum HOM05D006996 ORTHO05D008961 2.9e-40 168.3 83 89.2
Sopen07g026050 Solanum pennellii HOM05D006996 ORTHO05D008961 2.9e-40 168.3 83 86.7
Eucgr.A01713 Eucalyptus grandis HOM05D006996 ORTHO05D008961 3.8e-40 167.9 83 86.7
Peaxi162Scf00007g00930 Petunia axillaris HOM05D006996 ORTHO05D008961 3.8e-40 167.9 83 88.0
Dinv05447 Davidia involucrata HOM05D006996 ORTHO05D008961 6.4e-40 167.2 83 88.0
Manes.13G070800 Manihot esculenta HOM05D006996 ORTHO05D008961 6.4e-40 167.2 83 85.5
Hma1.2p1_0957F.1_g241430 Hydrangea macrophylla HOM05D006996 ORTHO05D008961 8.4e-40 166.8 83 88.0
MD09G1069700 Malus domestica HOM05D006996 ORTHO05D008961 8.4e-40 166.8 83 89.2
MD17G1095900 Malus domestica HOM05D006996 ORTHO05D008961 8.4e-40 166.8 83 89.2
CiPaw.03G161100 Carya illinoinensis HOM05D006996 ORTHO05D008961 1.4e-39 166.0 83 85.5
Ciclev10017328m.g Citrus clementina HOM05D006996 ORTHO05D008961 1.4e-39 166.0 83 88.0
Nitab4.5_0002137g0190 Nicotiana tabacum HOM05D006996 ORTHO05D008961 1.9e-39 165.6 82 87.8
Prupe.3G218000 Prunus persica HOM05D006996 ORTHO05D008961 1.9e-39 165.6 83 88.0
vmacro09127 Vaccinium macrocarpon HOM05D006996 ORTHO05D008961 1.9e-39 165.6 83 85.5
CSS0016840 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 3.2e-39 164.9 82 86.6
AUR62008544 Chenopodium quinoa HOM05D006996 ORTHO05D008961 3.2e-39 164.9 97 79.4
Potri.018G093501 Populus trichocarpa HOM05D006996 ORTHO05D008961 3.2e-39 164.9 82 87.8
CANSAT64G1676 Cannabis sativa HOM05D006996 ORTHO05D008961 4.2e-39 164.5 83 85.5
Lj1A759T40 Lonicera japonica HOM05D006996 ORTHO05D008961 4.2e-39 164.5 82 89.0
Lj1A760T24 Lonicera japonica HOM05D006996 ORTHO05D008961 4.2e-39 164.5 82 89.0
CsaV3_7G003680 Cucumis sativus L. HOM05D006996 ORTHO05D008961 5.4e-39 164.1 83 85.5
RcHm_v2.0_Chr2g0159651 Rosa chinensis HOM05D006996 ORTHO05D008961 7.1e-39 163.7 83 88.0
Sabra18G0080400 Salix brachista HOM05D006996 ORTHO05D008961 9.3e-39 163.3 82 86.6
Duzib128G0982 Durio zibethinus HOM05D006996 ORTHO05D008961 1.2e-38 162.9 82 85.4
FvH4_6g43320 Fragaria vesca HOM05D006996 ORTHO05D008961 1.6e-38 162.5 83 86.7
FAN14G3455 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.6e-38 162.5 83 86.7
HPP92_011134 Vanilla planifolia HOM05D006996 ORTHO05D008961 1.6e-38 162.5 84 84.5
CAN.G846.6 Capsicum annuum HOM05D006996 ORTHO05D008961 2.7e-38 161.8 83 81.9
Zm00001eb100890 Zea mays HOM05D006996 ORTHO05D008961 2.7e-38 161.8 83 88.0
Zm00001eb209620 Zea mays HOM05D006996 ORTHO05D008961 2.7e-38 161.8 83 88.0
CDE05G0144 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.5e-38 161.4 84 86.9
FAN05G4357 Fragaria x ananassa HOM05D006996 ORTHO05D008961 4.6e-38 161.0 83 85.5
Thecc.05G208500 Theobroma cacao HOM05D006996 ORTHO05D008961 4.6e-38 161.0 77 89.6
Lsat_1_v5_gn_5_163860 Lactuca sativa HOM05D006996 ORTHO05D008961 6.0e-38 160.6 82 86.6
MELO3C018811.2 Cucumis melo HOM05D006996 ORTHO05D008961 1.0e-37 159.8 80 85.0
THA.LOC104800987 Tarenaya hassleriana HOM05D006996 ORTHO05D008961 1.0e-37 159.8 83 85.5
Actinidia30517 Actinidia chinensis HOM05D006996 ORTHO05D008961 1.3e-37 159.5 91 79.1
Sed0014620 Sechium edule HOM05D006996 ORTHO05D008961 1.7e-37 159.1 83 83.1
FAN02G2509 Fragaria x ananassa HOM05D006996 ORTHO05D008961 2.3e-37 158.7 83 85.5
Nitab4.5_0007092g0010 Nicotiana tabacum HOM05D006996 ORTHO05D008961 2.3e-37 158.7 82 86.6
TWI18G0629 Tripterygium wilfordii HOM05D006996 ORTHO05D008961 2.3e-37 158.7 83 81.9
Cfa014416 Carpinus fangiana HOM05D006996 ORTHO05D008961 3.0e-37 158.3 83 84.3
CDE11G0800 Ceratophyllum demersum HOM05D006996 ORTHO05D008961 3.0e-37 158.3 84 85.7
MSTRG.6557 Avicennia marina HOM05D006996 ORTHO05D008961 3.9e-37 157.9 83 84.3
HanXRQChr11g0350381 Helianthus annuus HOM05D006996 ORTHO05D008961 8.7e-37 156.8 82 84.1
Aa31LG1G19540 Aethionema arabicum HOM05D006996 ORTHO05D008961 1.1e-36 156.4 83 85.5
PSO541G2316 Papaver somniferum HOM05D006996 ORTHO05D008961 3.3e-36 154.8 83 84.3
PSO675G8615 Papaver somniferum HOM05D006996 ORTHO05D008961 3.3e-36 154.8 83 84.3
AT1G05205 Arabidopsis thaliana HOM05D006996 ORTHO05D008961 2.1e-35 152.1 82 84.1
Carub.0001s0448 Capsella rubella HOM05D006996 ORTHO05D008961 2.1e-35 152.1 83 83.1
ECA248G0348 Erigeron canadensis HOM05D006996 ORTHO05D008961 2.1e-35 152.1 81 80.2
Thhalv10009219m.g Eutrema salsugineum HOM05D006996 ORTHO05D008961 2.8e-35 151.8 83 83.1
Sp1g04060 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.8e-35 151.8 83 83.1
SpUn0024_0080 Schrenkiella parvula HOM05D006996 ORTHO05D008961 2.8e-35 151.8 83 83.1
AL1G14970 Arabidopsis lyrata HOM05D006996 ORTHO05D008961 3.6e-35 151.4 82 82.9
BcaC07g42146 Brassica carinata HOM05D006996 ORTHO05D008961 3.6e-35 151.4 82 82.9
A10p03740 Brassica napus HOM05D006996 ORTHO05D008961 8.1e-35 150.2 83 81.9
C05p03440 Brassica napus HOM05D006996 ORTHO05D008961 8.1e-35 150.2 83 81.9
C08p51920 Brassica napus HOM05D006996 ORTHO05D008961 8.1e-35 150.2 82 81.7
BolC5t29123H Brassica oleracea HOM05D006996 ORTHO05D008961 8.1e-35 150.2 83 81.9
BolC8t52723H Brassica oleracea HOM05D006996 ORTHO05D008961 8.1e-35 150.2 82 81.7
BraA09t42088Z Brassica rapa HOM05D006996 ORTHO05D008961 8.1e-35 150.2 82 81.7
BraA10t42647Z Brassica rapa HOM05D006996 ORTHO05D008961 8.1e-35 150.2 83 81.9
Nn2g12174 Nelumbo nucifera HOM05D006996 ORTHO05D008961 2.4e-34 148.7 101 68.3
Medtr2g088460 Medicago truncatula HOM05D006996 ORTHO05D008961 4.0e-34 147.9 80 80.0
Aqoxy1G03305 Aquilegia oxysepala HOM05D006996 ORTHO05D008961 5.3e-34 147.5 96 71.9
arahy.Tifrunner.gnm1.ann1.7T5QAW Arachis hypogaea HOM05D006996 ORTHO05D008961 9.0e-34 146.7 78 79.5
arahy.Tifrunner.gnm1.ann1.BHY6M8 Arachis hypogaea HOM05D006996 ORTHO05D008961 9.0e-34 146.7 78 79.5
arahy.Tifrunner.gnm1.ann1.MSE8LU Arachis hypogaea HOM05D006996 ORTHO05D008961 9.0e-34 146.7 78 79.5
arahy.Tifrunner.gnm1.ann1.QWF8TS Arachis hypogaea HOM05D006996 ORTHO05D008961 9.0e-34 146.7 78 79.5
Migut.M00413 Erythranthe guttata HOM05D006996 ORTHO05D008961 1.5e-33 146.0 82 78.0
Glyma.12G194300 Glycine max HOM05D006996 ORTHO05D008961 2.6e-33 145.2 80 77.5
TPR.G4182 Trifolium pratense HOM05D006996 ORTHO05D008961 2.6e-33 145.2 85 77.6
unitig_21.g20728 Utricularia gibba HOM05D006996 ORTHO05D008961 5.8e-33 144.1 76 78.9
CARHR004680 Cardamine hirsuta HOM05D006996 ORTHO05D008961 7.6e-33 143.7 82 79.3
Glyma.13G308300 Glycine max HOM05D006996 ORTHO05D008961 1.4e-31 139.4 80 75.0
Lj3g0015321 Lotus japonicus HOM05D006996 ORTHO05D008961 3.2e-31 138.3 74 79.7
Phvul.005G114700 Phaseolus vulgaris HOM05D006996 ORTHO05D008961 4.2e-31 137.9 78 74.4
Lalb_Chr14g0375741 Lupinus albus HOM05D006996 ORTHO05D008961 7.1e-31 137.1 73 76.7
CSS0029979 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.5e-28 129.4 75 76.0
Sc12g0002320 Simmondsia chinensis HOM05D006996 ORTHO05D008961 4.3e-28 127.9 60 90.0
DCAR_014473 Daucus carota HOM05D006996 ORTHO05D008961 2.1e-27 125.6 60 90.0
SalBow7G3715 Salvia bowleyana HOM05D006996 ORTHO05D008961 6.2e-27 124.0 83 68.7
TAR627G0363 Trochodendron aralioides HOM05D006996 ORTHO05D008961 6.9e-26 120.6 60 86.7
Lsat_1_v5_gn_4_184120 Lactuca sativa HOM05D006996 ORTHO05D008961 2.0e-25 119.0 59 83.1
Psat5g264240 Pisum sativum HOM05D006996 ORTHO05D008961 3.2e-23 111.7 59 79.7
COL.COLO4_06384 Corchorus olitorius HOM05D006996 ORTHO05D008961 6.7e-21 104.0 50 88.0
TAR676G0001 Trochodendron aralioides HOM05D006996 ORTHO05D008961 6.7e-21 104.0 52 80.8
Mapoly0024s0016 Marchantia polymorpha HOM05D006996 ORTHO05D008961 1.4e-18 96.3 64 62.5
MCO13G082 Micromonas commoda HOM05D006996 ORTHO05D008961 1.6e-14 82.8 58 63.8
SEGI_13346 Sequoiadendron giganteum HOM05D006996 ORTHO05D008961 2.1e-14 82.4 61 59.0
CSS0002917 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 4.8e-11 71.2 36 86.1
FAN09G4817 Fragaria x ananassa HOM05D006996 ORTHO05D008961 1.8e-10 69.3 33 90.9
CSS0018135 Camellia sinensis var. sinensis HOM05D006996 ORTHO05D008961 1.2e-09 66.6 47 63.8
BcaB01g06120 Brassica carinata HOM05D006996 ORTHO05D008961 5.0e-08 61.2 37 75.7
TPR.G35081 Trifolium pratense HOM05D006996 ORTHO05D048925 2.7e-06 55.5 36 66.7


User provided reference genes

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