Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047620 Amaranthus hybridus HOM05D004908 ORTHO05D006418 3.0e-182 641.7 326 100.0
AUR62039652 Chenopodium quinoa HOM05D004908 ORTHO05D006418 5.2e-134 481.5 336 74.7
AUR62021531 Chenopodium quinoa HOM05D004908 ORTHO05D006418 2.0e-130 469.5 349 71.1
Hund02570 Selenicereus undatus HOM05D004908 ORTHO05D006418 4.0e-110 402.1 339 62.5
EL10Ac5g11159 Beta vulgaris HOM05D004908 ORTHO05D006418 3.5e-98 362.5 214 86.0
GSVIVG01008119001 Vitis vinifera HOM05D004908 ORTHO05D006418 6.4e-92 341.7 331 56.5
Dinv17436 Davidia involucrata HOM05D004908 ORTHO05D006418 1.2e-90 337.4 344 54.9
QL10p019966 Quercus lobata HOM05D004908 ORTHO05D006418 1.3e-89 334.0 345 55.4
Carub.0001s1823 Capsella rubella HOM05D004908 ORTHO05D006418 1.6e-87 327.0 306 57.5
Cfa019355 Carpinus fangiana HOM05D004908 ORTHO05D006418 3.6e-87 325.9 335 54.9
Potri.006G227300 Populus trichocarpa HOM05D004908 ORTHO05D006418 2.4e-86 323.2 334 53.6
AT1G18600 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.1e-86 322.8 306 56.9
Manes.14G087300 Manihot esculenta HOM05D004908 ORTHO05D006418 4.0e-86 322.4 348 54.3
Hma1.2p1_0060F.1_g032940 Hydrangea macrophylla HOM05D004908 ORTHO05D006418 1.2e-85 320.9 346 52.9
CSS0022679 Camellia sinensis var. sinensis HOM05D004908 ORTHO05D006418 2.0e-85 320.1 303 56.1
A06p14680 Brassica napus HOM05D004908 ORTHO05D006418 2.6e-85 319.7 326 54.9
BolC5t30387H Brassica oleracea HOM05D004908 ORTHO05D006418 2.6e-85 319.7 312 56.7
BraA06t24593Z Brassica rapa HOM05D004908 ORTHO05D006418 2.6e-85 319.7 326 54.9
BcaB07g31879 Brassica carinata HOM05D004908 ORTHO05D006418 3.4e-85 319.3 332 54.5
Thhalv10008142m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 7.6e-85 318.2 306 55.9
AL1G31040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 1.3e-84 317.4 306 55.9
CARHR019220 Cardamine hirsuta HOM05D004908 ORTHO05D006418 1.3e-84 317.4 290 59.0
Thecc.03G001900 Theobroma cacao HOM05D004908 ORTHO05D006418 2.9e-84 316.2 344 54.1
Sp1g16570 Schrenkiella parvula HOM05D004908 ORTHO05D006418 8.4e-84 314.7 305 55.1
TWI81G0201 Tripterygium wilfordii HOM05D004908 ORTHO05D006418 8.4e-84 314.7 334 51.5
Cpa.g.sc94.75 Carica papaya HOM05D004908 ORTHO05D006418 1.4e-83 313.9 324 54.6
CiPaw.12G009100 Carya illinoinensis HOM05D004908 ORTHO05D006418 1.9e-83 313.5 338 50.9
Gorai.008G298500 Gossypium raimondii HOM05D004908 ORTHO05D006418 5.4e-83 312.0 339 55.5
Ciclev10021158m.g Citrus clementina HOM05D004908 ORTHO05D006418 7.1e-83 311.6 332 54.2
Prupe.5G207300 Prunus persica HOM05D004908 ORTHO05D006418 1.2e-82 310.8 344 54.1
BcaC05g25755 Brassica carinata HOM05D004908 ORTHO05D006418 1.6e-82 310.5 310 55.8
C05p16860 Brassica napus HOM05D004908 ORTHO05D006418 1.6e-82 310.5 310 55.8
RcHm_v2.0_Chr7g0183321 Rosa chinensis HOM05D004908 ORTHO05D006418 3.5e-82 309.3 340 53.2
Cc00_g03370 Coffea canephora HOM05D004908 ORTHO05D006418 3.0e-81 306.2 343 53.6
Gohir.A12G276800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.1e-81 305.4 339 54.9
Sabra06G0175900 Salix brachista HOM05D004908 ORTHO05D006418 6.6e-81 305.1 334 52.4
Eucgr.B00624 Eucalyptus grandis HOM05D004908 ORTHO05D006418 1.1e-80 304.3 326 52.8
Haze_07746 Corylus avellana HOM05D004908 ORTHO05D006418 1.5e-80 303.9 364 50.0
MD14G1214000 Malus domestica HOM05D004908 ORTHO05D006418 9.6e-80 301.2 347 52.4
CsaV3_1G006120 Cucumis sativus L. HOM05D004908 ORTHO05D006418 2.1e-79 300.1 272 60.7
Peaxi162Scf01223g00009 Petunia axillaris HOM05D004908 ORTHO05D006418 2.1e-79 300.1 340 53.2
Sed0013495 Sechium edule HOM05D004908 ORTHO05D006418 6.2e-79 298.5 274 57.7
Aa31LG7G3360 Aethionema arabicum HOM05D004908 ORTHO05D006418 1.1e-78 297.7 299 54.2
MSTRG.9592 Avicennia marina HOM05D004908 ORTHO05D006418 1.4e-78 297.4 344 51.2
THA.LOC104808039 Tarenaya hassleriana HOM05D004908 ORTHO05D006418 1.4e-78 297.4 337 50.7
Atru.chr9.517 Acer truncatum HOM05D004908 ORTHO05D006418 6.9e-78 295.0 342 51.2
CANSAT80G1354 Cannabis sativa HOM05D004908 ORTHO05D006418 6.9e-78 295.0 303 53.5
Gohir.D12G277800 Gossypium hirsutum HOM05D004908 ORTHO05D006418 6.9e-78 295.0 300 57.0
FvH4_5g13640 Fragaria vesca HOM05D004908 ORTHO05D006418 1.2e-77 294.3 274 56.9
Lj9C439G11 Lonicera japonica HOM05D004908 ORTHO05D006418 2.0e-77 293.5 212 67.5
Rhsim08G0143800 Rhododendron simsii HOM05D004908 ORTHO05D006418 2.0e-77 293.5 373 46.4
Oeu032097.2 Olea europaea HOM05D004908 ORTHO05D006418 5.8e-77 292.0 285 54.7
Lsat_1_v5_gn_5_22901 Lactuca sativa HOM05D004908 ORTHO05D006418 7.6e-77 291.6 332 50.6
HanXRQChr05g0153521 Helianthus annuus HOM05D004908 ORTHO05D006418 1.3e-76 290.8 327 50.2
SGA_v2.0_scaffold51G18774 Striga asiatica HOM05D004908 ORTHO05D006418 1.7e-76 290.4 353 49.6
Duzib068G0428 Durio zibethinus HOM05D004908 ORTHO05D006418 2.2e-76 290.0 349 51.6
ClCG04G011680 Citrullus lanatus HOM05D004908 ORTHO05D006418 1.1e-75 287.7 272 59.2
Glyma.05G019500 Glycine max HOM05D004908 ORTHO05D006418 3.2e-75 286.2 307 52.4
Phvul.003G183300 Phaseolus vulgaris HOM05D004908 ORTHO05D006418 3.2e-75 286.2 313 52.4
Sc04g0004310 Simmondsia chinensis HOM05D004908 ORTHO05D006418 1.6e-74 283.9 335 50.7
ECA246G3883 Erigeron canadensis HOM05D004908 ORTHO05D006418 3.5e-74 282.7 238 63.0
VMungo1215G2693 Vigna mungo HOM05D004908 ORTHO05D006418 4.6e-74 282.3 324 49.7
Migut.D01626 Erythranthe guttata HOM05D004908 ORTHO05D006418 7.8e-74 281.6 297 52.9
Aqoxy3G03654 Aquilegia oxysepala HOM05D004908 ORTHO05D006418 6.6e-73 278.5 271 53.5
TAR371G0785 Trochodendron aralioides HOM05D004908 ORTHO05D006418 1.1e-72 277.7 328 47.9
Nn4g23471 Nelumbo nucifera HOM05D004908 ORTHO05D006418 3.3e-72 276.2 344 47.1
Sopen12g018880 Solanum pennellii HOM05D004908 ORTHO05D006418 4.3e-72 275.8 286 52.4
Medtr4g109700 Medicago truncatula HOM05D004908 ORTHO05D006418 3.6e-71 272.7 299 51.2
Lj4g0028183 Lotus japonicus HOM05D004908 ORTHO05D006418 1.2e-69 267.7 304 48.7
TPR.G1983 Trifolium pratense HOM05D004908 ORTHO05D006418 2.6e-69 266.5 210 63.3
Lalb_Chr07g0178341 Lupinus albus HOM05D004908 ORTHO05D006418 3.4e-69 266.2 307 51.8
Prupe.5G207200 Prunus persica HOM05D004908 ORTHO05D006418 4.5e-69 265.8 352 46.3
unitig_699.g19027 Utricularia gibba HOM05D004908 ORTHO05D006418 7.6e-69 265.0 195 65.6
Nitab4.5_0001797g0080 Nicotiana tabacum HOM05D004908 ORTHO05D006418 1.9e-67 260.4 353 45.3
PSO478G4625 Papaver somniferum HOM05D004908 ORTHO05D006418 1.9e-67 260.4 254 52.4
MELO3C002041.2 Cucumis melo HOM05D004908 ORTHO05D006418 2.4e-67 260.0 241 58.5
arahy.Tifrunner.gnm1.ann1.J6BFMQ Arachis hypogaea HOM05D004908 ORTHO05D006418 3.2e-67 259.6 309 49.8
arahy.Tifrunner.gnm1.ann1.PAN20U Arachis hypogaea HOM05D004908 ORTHO05D006418 3.2e-67 259.6 309 49.8
DCAR_011562 Daucus carota HOM05D004908 ORTHO05D006418 2.1e-66 256.9 298 51.0
Nitab4.5_0006506g0020 Nicotiana tabacum HOM05D004908 ORTHO05D006418 4.3e-64 249.2 208 61.5
Manes.14G087101 Manihot esculenta HOM05D004908 ORTHO05D006418 9.6e-64 248.1 347 43.5
MBI16_g10851_MAGBIO Magnolia biondii HOM05D004908 ORTHO05D006418 2.4e-62 243.4 347 44.4
Duzib205G0531 Durio zibethinus HOM05D004908 ORTHO05D006418 1.2e-61 241.1 215 54.0
FAN13G3071 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.3e-60 237.7 275 49.1
SHI17490 Sapria himalayana HOM05D004908 ORTHO05D006418 1.9e-59 233.8 204 57.8
SalBow7G1843 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.1e-58 230.3 215 52.1
PSO017G5063 Papaver somniferum HOM05D004908 ORTHO05D006418 1.3e-57 227.6 236 53.8
PSO017G6704 Papaver somniferum HOM05D004908 ORTHO05D006418 1.8e-57 227.3 236 53.4
vmacro17622 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 6.7e-57 225.3 208 57.7
FAN18G1888 Fragaria x ananassa HOM05D004908 ORTHO05D006418 9.6e-56 221.5 340 42.1
FAN13G1921 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-55 220.7 344 42.4
Os01g0763100 Oryza sativa ssp. japonica HOM05D004908 ORTHO05D006418 2.1e-55 220.3 207 54.1
HPP92_019201 Vanilla planifolia HOM05D004908 ORTHO05D006418 3.7e-55 219.5 206 52.4
CDE07G0469 Ceratophyllum demersum HOM05D004908 ORTHO05D006418 4.8e-55 219.2 231 48.5
FAN08G1663 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.5e-53 214.2 351 41.6
FAN08G0411 Fragaria x ananassa HOM05D004908 ORTHO05D006418 4.5e-53 212.6 329 43.5
PGR083G2541 Punica granatum HOM05D004908 ORTHO05D006418 3.2e-51 206.5 292 41.8
ATR0827G189 Amborella trichopoda HOM05D004908 ORTHO05D006418 5.5e-51 205.7 196 51.0
Zm00001eb370410 Zea mays HOM05D004908 ORTHO05D006418 1.9e-48 197.2 303 44.6
AT1G74130 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 4.3e-48 196.1 294 40.5
FAN13G1644 Fragaria x ananassa HOM05D004908 ORTHO05D006418 1.6e-47 194.1 202 51.5
PSO017G2617 Papaver somniferum HOM05D004908 ORTHO05D006418 1.4e-46 191.0 264 43.2
Pp3c22_7870 Physcomitrium patens HOM05D004908 ORTHO05D006418 3.1e-46 189.9 229 45.4
CARHR067290 Cardamine hirsuta HOM05D004908 ORTHO05D006418 6.9e-46 188.7 300 40.7
AL2G34040 Arabidopsis lyrata HOM05D004908 ORTHO05D006418 4.5e-45 186.0 274 42.0
BraA07t31547Z Brassica rapa HOM05D003320 ORTHO05D003941 5.9e-45 185.7 215 47.0
AagrBONN_evm.TU.Sc2ySwM_368.1628 Anthoceros agrestis HOM05D004908 ORTHO05D006418 1.9e-43 180.6 199 47.7
A07p40020 Brassica napus HOM05D003320 ORTHO05D003941 2.5e-43 180.3 215 46.0
Gohir.D10G255500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 9.4e-43 178.3 127 70.1
Carub.0002s2095 Capsella rubella HOM05D004908 ORTHO05D006418 1.0e-41 174.9 242 43.8
BolC6t39860H Brassica oleracea HOM05D004908 ORTHO05D006418 2.3e-41 173.7 285 39.6
Mapoly0086s0048 Marchantia polymorpha HOM05D004908 ORTHO05D006418 3.0e-41 173.3 204 44.1
FvH4_5g13620 Fragaria vesca HOM05D004908 ORTHO05D006418 1.5e-40 171.0 164 54.3
RcHm_v2.0_Chr1g0346931 Rosa chinensis HOM05D004908 ORTHO05D006418 1.9e-40 170.6 122 70.5
Carub.0002s2094 Capsella rubella HOM05D004908 ORTHO05D006418 3.3e-40 169.9 303 38.3
Psat0s3566g0040 Pisum sativum HOM05D004908 ORTHO05D006418 1.3e-39 167.9 223 44.8
BcaC08g46817 Brassica carinata HOM05D004908 ORTHO05D006418 6.3e-39 165.6 328 36.9
Prupe.3G124800 Prunus persica HOM05D004908 ORTHO05D006418 6.3e-39 165.6 273 41.4
SalBow7G0217 Salvia bowleyana HOM05D004908 ORTHO05D006418 1.4e-38 164.5 351 36.8
C06p48280 Brassica napus HOM05D004908 ORTHO05D006418 2.4e-38 163.7 310 37.1
Solyc12g038600.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 4.1e-38 162.9 147 59.9
SalBow7G4422 Salvia bowleyana HOM05D004908 ORTHO05D006418 6.9e-38 162.2 347 35.4
BcaC08g46813 Brassica carinata HOM05D004908 ORTHO05D006418 3.4e-37 159.8 284 37.7
Thhalv10019561m.g Eutrema salsugineum HOM05D004908 ORTHO05D006418 6.5e-36 155.6 339 37.5
Glyma.17G080300 Glycine max HOM05D004908 ORTHO05D006418 6.1e-34 149.1 166 50.6
Actinidia13428 Actinidia chinensis HOM05D004908 ORTHO05D006418 6.7e-33 145.6 101 72.3
MCO07G692 Micromonas commoda HOM05D004908 ORTHO05D006418 6.7e-33 145.6 210 38.1
BcaC08g46846 Brassica carinata HOM05D003320 ORTHO05D003941 1.5e-32 144.4 284 35.6
Actinidia04812 Actinidia chinensis HOM05D004908 ORTHO05D006418 2.8e-31 140.2 178 46.6
SalBow7G4769 Salvia bowleyana HOM05D004908 ORTHO05D006418 2.8e-31 140.2 334 34.1
AT1G74140 Arabidopsis thaliana HOM05D004908 ORTHO05D006418 3.1e-30 136.7 302 35.8
SEGI_05482 Sequoiadendron giganteum HOM05D004908 ORTHO05D006418 1.5e-29 134.4 143 51.7
C06p48290 Brassica napus HOM05D003320 ORTHO05D003941 3.4e-29 133.3 278 34.9
RcHm_v2.0_Chr6g0258631 Rosa chinensis HOM05D004908 ORTHO05D006418 3.4e-29 133.3 121 57.9
HPP92_019191 Vanilla planifolia HOM05D004908 ORTHO05D006418 2.5e-27 127.1 122 50.8
RcHm_v2.0_Chr7g0183341 Rosa chinensis HOM05D004908 ORTHO05D006418 5.5e-27 125.9 117 54.7
vmacro17623 Vaccinium macrocarpon HOM05D004908 ORTHO05D006418 1.0e-25 121.7 93 64.5
Solyc12g038590.2 Solanum lycopersicum HOM05D004908 ORTHO05D006418 6.7e-25 119.0 212 38.2
Gohir.A06G087200 Gossypium hirsutum HOM05D004908 ORTHO05D006418 1.5e-24 117.9 73 74.0
RcHm_v2.0_Chr6g0258651 Rosa chinensis HOM05D004908 ORTHO05D006418 1.4e-22 111.3 74 73.0
CBR_g24070 Chara braunii HOM05D000019 ORTHO05D000002 1.2e-18 98.2 169 36.1
RcHm_v2.0_Chr1g0346941 Rosa chinensis HOM05D004908 ORTHO05D006418 3.0e-17 93.6 72 59.7
Dinv17434 Davidia involucrata HOM05D004908 ORTHO05D006418 6.3e-15 85.9 84 53.6
FvH4_5g13610 Fragaria vesca HOM05D004908 ORTHO05D006418 7.0e-14 82.4 74 59.5
BolC6t39863H Brassica oleracea HOM05D004908 ORTHO05D039080 1.2e-13 81.6 169 36.1
BcaC08g46819 Brassica carinata HOM05D004908 ORTHO05D039080 1.5e-11 74.7 89 44.9
Gohir.A07G149500 Gossypium hirsutum HOM05D004908 ORTHO05D006418 5.2e-09 66.2 43 69.8
PRCOL_00000970 Prasinoderma coloniale HOM05D049057 ORTHO05D049180 4.1e-06 56.6 189 29.6


User provided reference genes

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