Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 1.8e-93 345.9 172 100.0
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.8e-35 152.1 81 93.8
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 1.9e-34 149.8 79 96.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.2e-34 149.1 96 80.2
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 5.5e-34 148.3 86 86.0
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 9.3e-34 147.5 113 69.0
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 1.2e-33 147.1 80 90.0
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.2e-33 147.1 80 91.2
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 1.6e-33 146.7 79 92.4
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 2.7e-33 146.0 77 96.1
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 3.5e-33 145.6 84 88.1
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 3.5e-33 145.6 79 91.1
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 6.0e-33 144.8 113 67.3
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 6.0e-33 144.8 77 90.9
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 6.0e-33 144.8 79 89.9
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 6.0e-33 144.8 82 87.8
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 7.9e-33 144.4 98 74.5
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 7.9e-33 144.4 79 88.6
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 7.9e-33 144.4 79 91.1
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 7.9e-33 144.4 77 92.2
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.0e-32 144.1 113 68.1
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 1.0e-32 144.1 79 91.1
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.3e-32 143.7 113 67.3
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 5.1e-32 141.7 77 89.6
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 5.1e-32 141.7 75 96.0
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 5.1e-32 141.7 77 89.6
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 6.7e-32 141.4 79 89.9
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 6.7e-32 141.4 97 73.2
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 6.7e-32 141.4 101 70.3
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 6.7e-32 141.4 77 92.2
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 8.7e-32 141.0 113 62.8
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 8.7e-32 141.0 82 85.4
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.1e-31 140.6 113 64.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 1.1e-31 140.6 77 92.2
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 1.5e-31 140.2 78 89.7
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 1.5e-31 140.2 79 88.6
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 1.9e-31 139.8 79 87.3
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.9e-31 139.8 113 63.7
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 2.5e-31 139.4 78 89.7
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 2.5e-31 139.4 79 87.3
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 2.5e-31 139.4 78 89.7
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 3.3e-31 139.0 77 88.3
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 4.3e-31 138.7 79 84.8
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 4.3e-31 138.7 79 84.8
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 5.7e-31 138.3 79 84.8
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 5.7e-31 138.3 79 84.8
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 5.7e-31 138.3 113 65.5
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 5.7e-31 138.3 78 88.5
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 9.7e-31 137.5 77 87.0
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 1.3e-30 137.1 113 64.6
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.3e-30 137.1 92 77.2
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 1.3e-30 137.1 113 64.6
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 1.6e-30 136.7 79 83.5
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 1.6e-30 136.7 78 85.9
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.6e-30 136.7 113 64.6
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 1.6e-30 136.7 113 63.7
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 2.2e-30 136.3 113 63.7
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.2e-30 136.3 77 85.7
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 2.2e-30 136.3 89 75.3
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.2e-30 136.3 89 75.3
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.2e-30 136.3 89 75.3
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.2e-30 136.3 113 63.7
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 2.2e-30 136.3 113 63.7
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 2.2e-30 136.3 77 87.0
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 2.2e-30 136.3 77 87.0
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.2e-30 136.3 113 63.7
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 2.8e-30 136.0 79 83.5
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 2.8e-30 136.0 79 83.5
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 2.8e-30 136.0 79 83.5
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 2.8e-30 136.0 79 83.5
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 2.8e-30 136.0 113 62.8
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 3.7e-30 135.6 113 63.7
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 3.7e-30 135.6 77 84.4
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 3.7e-30 135.6 113 63.7
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 3.7e-30 135.6 75 86.7
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 3.7e-30 135.6 77 83.1
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-30 135.2 79 83.5
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-30 135.2 79 83.5
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 4.8e-30 135.2 79 83.5
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 4.8e-30 135.2 77 84.4
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 8.2e-30 134.4 113 61.9
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.1e-29 134.0 79 82.3
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 1.1e-29 134.0 113 61.1
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 1.1e-29 134.0 113 62.8
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 1.1e-29 134.0 77 83.1
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.4e-29 133.7 113 61.1
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 1.4e-29 133.7 113 61.1
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 1.4e-29 133.7 113 61.1
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.4e-29 133.7 113 61.1
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 1.4e-29 133.7 79 82.3
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 1.4e-29 133.7 91 72.5
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 1.4e-29 133.7 113 61.1
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.4e-29 133.7 111 65.8
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 4.1e-29 132.1 113 60.2
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 5.3e-29 131.7 77 81.8
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 5.3e-29 131.7 111 64.0
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 9.0e-29 131.0 82 78.0
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 9.0e-29 131.0 77 81.8
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 9.0e-29 131.0 77 81.8
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 9.0e-29 131.0 113 60.2
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 1.2e-28 130.6 77 80.5
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.2e-28 130.6 77 80.5
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.2e-28 130.6 75 86.7
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 1.2e-28 130.6 75 84.0
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.2e-28 130.6 77 80.5
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 1.5e-28 130.2 75 84.0
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 1.5e-28 130.2 75 84.0
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 2.6e-28 129.4 113 60.2
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 4.5e-28 128.6 113 60.2
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 4.5e-28 128.6 113 60.2
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 4.5e-28 128.6 75 84.0
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 2.2e-27 126.3 73 82.2
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 2.2e-27 126.3 75 82.7
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.2e-27 126.3 78 82.1
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 2.2e-27 126.3 76 78.9
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 2.9e-27 125.9 112 64.3
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 3.8e-27 125.6 92 70.7
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 5.0e-27 125.2 70 85.7
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 7.2e-26 121.3 113 54.0
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 2.1e-25 119.8 77 70.1
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.6e-25 119.0 111 57.7
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 7.9e-25 117.9 102 61.8
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.0e-24 115.9 105 58.1
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.9e-24 115.5 77 75.3
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 3.9e-24 115.5 77 75.3
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 5.1e-24 115.2 76 71.1
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 8.2e-22 107.8 71 76.1
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 5.3e-21 105.1 136 46.3
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 1.2e-20 104.0 69 81.2
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 2.0e-20 103.2 56 89.3
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 4.5e-20 102.1 70 61.4
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 2.9e-19 99.4 75 58.7
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 4.2e-18 95.5 56 82.1
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 7.2e-18 94.7 57 78.9
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 9.4e-18 94.4 56 80.4
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 2.7e-17 92.8 85 61.2
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 3.9e-16 89.0 116 42.2
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 6.9e-13 78.2 45 82.2
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 6.9e-13 78.2 103 39.8
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 1.1e-10 70.9 42 76.2
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 1.9e-10 70.1 75 57.3
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.7e-09 66.2 75 44.0


User provided reference genes

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