Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047400 Amaranthus hybridus HOM05D005253 ORTHO05D006058 3.3e-162 575.1 312 100.0
Ah.02g114240 Amaranthus hybridus HOM05D005253 ORTHO05D006058 2.4e-96 356.3 322 65.5
EL10Ac5g11189 Beta vulgaris HOM05D005253 ORTHO05D006058 1.7e-89 333.6 324 63.6
AUR62039667 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.2e-84 317.4 324 61.4
AUR62032138 Chenopodium quinoa HOM05D005253 ORTHO05D006058 1.6e-71 273.9 324 57.1
Hund09956 Selenicereus undatus HOM05D005253 ORTHO05D006058 6.0e-63 245.4 286 57.3
Sc04g0003900 Simmondsia chinensis HOM05D005253 ORTHO05D006058 6.2e-60 235.3 297 49.5
Gohir.A09G243900 Gossypium hirsutum HOM05D005253 ORTHO05D006058 1.3e-57 227.6 306 48.0
Rhsim08G0142100 Rhododendron simsii HOM05D005253 ORTHO05D006058 1.0e-54 218.0 329 45.6
Hund02544 Selenicereus undatus HOM05D005253 ORTHO05D006058 3.9e-54 216.1 307 49.5
TWI60G1362 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 5.1e-54 215.7 312 47.1
Cfa017731 Carpinus fangiana HOM05D005253 ORTHO05D006058 1.1e-51 208.0 311 46.9
Gohir.D07G063700 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.2e-51 205.7 318 46.5
Gorai.006G268700 Gossypium raimondii HOM05D005253 ORTHO05D006058 5.2e-51 205.7 306 44.8
Haze_18511 Corylus avellana HOM05D005253 ORTHO05D006058 1.5e-50 204.1 313 46.3
vmacro17641 Vaccinium macrocarpon HOM05D005253 ORTHO05D006058 1.5e-50 204.1 318 44.7
Glyma.17G081700 Glycine max HOM05D005253 ORTHO05D006058 9.9e-50 201.4 300 45.0
Glyma.05G018200 Glycine max HOM05D005253 ORTHO05D006058 3.8e-49 199.5 328 42.4
Cc04_g08280 Coffea canephora HOM05D005253 ORTHO05D006058 1.1e-48 198.0 288 46.2
RcHm_v2.0_Chr7g0183731 Rosa chinensis HOM05D005253 ORTHO05D006058 1.1e-48 198.0 309 45.6
Gorai.001G067300 Gossypium raimondii HOM05D005253 ORTHO05D006058 1.4e-48 197.6 317 46.1
GSVIVG01008154001 Vitis vinifera HOM05D005253 ORTHO05D006058 3.2e-48 196.4 294 46.3
FvH4_5g13401 Fragaria vesca HOM05D005253 ORTHO05D006058 4.1e-48 196.1 310 45.8
TWI81G0215 Tripterygium wilfordii HOM05D005253 ORTHO05D006058 5.4e-48 195.7 310 44.2
FAN08G1625 Fragaria x ananassa HOM05D005253 ORTHO05D006058 7.1e-48 195.3 287 47.7
Prupe.5G210000 Prunus persica HOM05D005253 ORTHO05D006058 9.2e-48 194.9 292 46.6
Dinv38642 Davidia involucrata HOM05D005253 ORTHO05D006058 1.2e-47 194.5 296 45.3
Ciclev10020920m.g Citrus clementina HOM05D005253 ORTHO05D006058 2.1e-47 193.7 295 45.4
MD14G1216600 Malus domestica HOM05D005253 ORTHO05D006058 2.1e-47 193.7 291 46.4
Duzib068G0534 Durio zibethinus HOM05D005253 ORTHO05D006058 2.7e-47 193.4 291 45.7
MD06G1205700 Malus domestica HOM05D005253 ORTHO05D006058 1.0e-46 191.4 312 44.6
Potri.004G107000 Populus trichocarpa HOM05D005253 ORTHO05D006058 1.3e-46 191.0 318 43.7
FAN13G1214 Fragaria x ananassa HOM05D005253 ORTHO05D006058 3.0e-46 189.9 287 47.0
Gohir.D09G244600 Gossypium hirsutum HOM05D005253 ORTHO05D006058 5.1e-46 189.1 306 42.8
Medtr4g109960 Medicago truncatula HOM05D005253 ORTHO05D006058 5.1e-46 189.1 318 40.6
FAN18G4071 Fragaria x ananassa HOM05D005253 ORTHO05D006058 1.9e-45 187.2 326 43.9
Lj4g0025893 Lotus japonicus HOM05D005253 ORTHO05D006058 1.9e-45 187.2 300 44.7
Duzib205G1609 Durio zibethinus HOM05D005253 ORTHO05D006058 2.1e-44 183.7 320 41.6
TPR.G1989 Trifolium pratense HOM05D005253 ORTHO05D006058 3.6e-44 183.0 291 42.3
arahy.Tifrunner.gnm1.ann1.TSF3K2 Arachis hypogaea HOM05D005253 ORTHO05D006058 4.7e-44 182.6 295 43.4
Lalb_Chr13g0302681 Lupinus albus HOM05D005253 ORTHO05D006058 4.7e-44 182.6 319 42.3
VMungo1215G3162 Vigna mungo HOM05D005253 ORTHO05D006058 8.1e-44 181.8 298 45.3
Peaxi162Scf00365g00114 Petunia axillaris HOM05D005253 ORTHO05D006058 2.4e-43 180.3 288 43.8
PSO017G7367 Papaver somniferum HOM05D005253 ORTHO05D006058 4.0e-43 179.5 294 43.2
TPR.G2086 Trifolium pratense HOM05D005253 ORTHO05D006058 8.9e-43 178.3 299 43.1
ECA246G0831 Erigeron canadensis HOM05D005253 ORTHO05D006058 1.2e-42 177.9 283 43.5
Gohir.A07G058832 Gossypium hirsutum HOM05D005253 ORTHO05D006058 2.6e-42 176.8 318 42.8
arahy.Tifrunner.gnm1.ann1.399KXC Arachis hypogaea HOM05D005253 ORTHO05D006058 3.4e-42 176.4 298 44.3
Thhalv10014100m.g Eutrema salsugineum HOM05D005253 ORTHO05D006058 4.4e-42 176.0 287 42.5
Cpa.g.sc3.232 Carica papaya HOM05D005253 ORTHO05D006058 7.6e-42 175.3 295 42.4
Lsat_1_v5_gn_5_23380 Lactuca sativa HOM05D005253 ORTHO05D006058 9.9e-42 174.9 289 42.6
CARHR205070 Cardamine hirsuta HOM05D005253 ORTHO05D006058 1.7e-41 174.1 288 44.1
CANSAT80G0823 Cannabis sativa HOM05D005253 ORTHO05D006058 2.2e-41 173.7 331 38.4
Phvul.003G182200 Phaseolus vulgaris HOM05D005253 ORTHO05D006058 3.8e-41 172.9 329 40.7
SGA_v2.0_scaffold65G22104 Striga asiatica HOM05D005253 ORTHO05D006058 3.8e-41 172.9 280 46.4
SHI17413 Sapria himalayana HOM05D005253 ORTHO05D006058 3.2e-40 169.9 294 42.5
Glyma.04G159100 Glycine max HOM05D005253 ORTHO05D006058 4.2e-40 169.5 279 40.9
ATR0691G224 Amborella trichopoda HOM05D005253 ORTHO05D006058 7.1e-40 168.7 309 40.1
Sed0023471 Sechium edule HOM05D005253 ORTHO05D006058 9.3e-40 168.3 297 45.1
Sopen03g033840 Solanum pennellii HOM05D005253 ORTHO05D006058 2.1e-39 167.2 309 42.4
MSTRG.9581 Avicennia marina HOM05D005253 ORTHO05D006058 2.7e-39 166.8 288 44.4
Manes.06G080800 Manihot esculenta HOM05D005253 ORTHO05D006058 2.7e-39 166.8 295 41.7
THA.LOC104818357 Tarenaya hassleriana HOM05D005253 ORTHO05D006058 2.7e-39 166.8 290 40.0
Nn3g17535 Nelumbo nucifera HOM05D005253 ORTHO05D006058 1.0e-38 164.9 297 41.8
CSS0036905 Camellia sinensis var. sinensis HOM05D005253 ORTHO05D006058 1.3e-38 164.5 315 40.6
HanXRQChr05g0157441 Helianthus annuus HOM05D005253 ORTHO05D006058 5.1e-38 162.5 290 40.7
Solyc03g114760.3 Solanum lycopersicum HOM05D005253 ORTHO05D006058 8.7e-38 161.8 309 41.1
Aqoxy3G03749 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.1e-37 161.4 289 42.2
PSO478G2666 Papaver somniferum HOM05D005253 ORTHO05D006058 1.5e-37 161.0 294 39.8
Prupe.8G074000 Prunus persica HOM05D005253 ORTHO05D006058 1.5e-37 161.0 225 46.2
SalBow7G2030 Salvia bowleyana HOM05D005253 ORTHO05D006058 1.5e-37 161.0 291 41.6
AL6G18490 Arabidopsis lyrata HOM05D005253 ORTHO05D006058 2.5e-37 160.2 283 40.3
AT5G08120 Arabidopsis thaliana HOM05D005253 ORTHO05D006058 2.5e-37 160.2 283 40.6
Nitab4.5_0002041g0040 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.5e-37 160.2 294 41.5
PGR044G0085 Punica granatum HOM05D005253 ORTHO05D006058 3.3e-37 159.8 283 42.4
COL.COLO4_27496 Corchorus olitorius HOM05D005253 ORTHO05D006058 5.6e-37 159.1 297 40.7
TAR371G0033 Trochodendron aralioides HOM05D005253 ORTHO05D006058 5.6e-37 159.1 297 40.4
MBI14_g08108_MAGBIO Magnolia biondii HOM05D005253 ORTHO05D006058 7.3e-37 158.7 301 39.9
BcaB08g37285 Brassica carinata HOM05D005253 ORTHO05D006058 1.3e-36 157.9 284 38.0
C09p68830 Brassica napus HOM05D005253 ORTHO05D006058 1.3e-36 157.9 284 38.0
Peaxi162Scf00017g03254 Petunia axillaris HOM05D005253 ORTHO05D006058 2.8e-36 156.8 297 41.8
Ca_21755_v3 Cicer arietinum L. HOM05D005253 ORTHO05D006058 3.6e-36 156.4 297 40.4
Lj1g0009577 Lotus japonicus HOM05D005253 ORTHO05D006058 3.6e-36 156.4 280 40.7
PGSC0003DMG400024524 Solanum tuberosum HOM05D005253 ORTHO05D006058 1.1e-35 154.8 309 40.8
BraA10t44904Z Brassica rapa HOM05D005253 ORTHO05D006058 1.4e-35 154.5 286 38.5
PSO782G3834 Papaver somniferum HOM05D005253 ORTHO05D006058 1.4e-35 154.5 315 40.6
Migut.D01615 Erythranthe guttata HOM05D005253 ORTHO05D006058 1.8e-35 154.1 281 44.5
Nitab4.5_0002467g0110 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.0e-35 152.9 313 39.6
HanXRQChr02g0051141 Helianthus annuus HOM05D005253 ORTHO05D006058 5.3e-35 152.5 286 39.9
Sp6g34840 Schrenkiella parvula HOM05D005253 ORTHO05D006058 6.9e-35 152.1 287 39.0
Eucgr.K02550 Eucalyptus grandis HOM05D005253 ORTHO05D006058 1.2e-34 151.4 261 41.4
PSO063G5368 Papaver somniferum HOM05D005253 ORTHO05D006058 1.5e-34 151.0 315 40.6
DCAR_010175 Daucus carota HOM05D005253 ORTHO05D006058 2.6e-34 150.2 293 39.6
Nitab4.5_0005994g0050 Nicotiana tabacum HOM05D005253 ORTHO05D006058 2.6e-34 150.2 313 39.9
BolC9t59630H Brassica oleracea HOM05D005253 ORTHO05D006058 9.9e-34 148.3 289 37.4
Oeu014427.1 Olea europaea HOM05D005253 ORTHO05D006058 1.3e-33 147.9 278 42.4
Manes.14G089100 Manihot esculenta HOM05D005253 ORTHO05D006058 2.9e-33 146.7 303 38.3
A10p28550 Brassica napus HOM05D005253 ORTHO05D006058 3.8e-33 146.4 284 37.3
Dinv17459 Davidia involucrata HOM05D005253 ORTHO05D006058 4.9e-33 146.0 268 41.4
ClCG04G011560 Citrullus lanatus HOM05D005253 ORTHO05D006058 6.4e-33 145.6 295 40.0
QL10p020742 Quercus lobata HOM05D005253 ORTHO05D006058 4.2e-32 142.9 488 30.5
MELO3C002054.2 Cucumis melo HOM05D005253 ORTHO05D006058 7.1e-32 142.1 298 40.3
unitig_578.g15937 Utricularia gibba HOM05D005253 ORTHO05D006058 7.1e-32 142.1 300 36.7
HPP92_019902 Vanilla planifolia HOM05D005253 ORTHO05D006058 7.1e-32 142.1 278 39.9
Hma1.2p1_0060F.1_g032740 Hydrangea macrophylla HOM05D005253 ORTHO05D006058 9.3e-32 141.7 327 35.8
CDE05G1733 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.6e-31 139.4 293 36.2
Sabra04G0074900 Salix brachista HOM05D005253 ORTHO05D006058 1.3e-30 137.9 284 38.7
unitig_8.g4498 Utricularia gibba HOM05D005253 ORTHO05D006058 2.3e-30 137.1 307 39.1
Atru.chr4.1592 Acer truncatum HOM05D005253 ORTHO05D006058 8.7e-30 135.2 324 37.0
Zm00001eb380690 Zea mays HOM05D005253 ORTHO05D006058 9.6e-29 131.7 298 34.9
Aqoxy3G00549 Aquilegia oxysepala HOM05D005253 ORTHO05D006058 1.3e-28 131.3 291 36.8
Thecc.03G108400 Theobroma cacao HOM05D005253 ORTHO05D006058 1.3e-28 131.3 214 43.5
CiPaw.16G080100 Carya illinoinensis HOM05D005253 ORTHO05D006058 8.1e-28 128.6 264 41.3
Psat4g046080 Pisum sativum HOM05D005253 ORTHO05D006058 8.1e-28 128.6 286 35.7
Aa31LG3G18420 Aethionema arabicum HOM05D005253 ORTHO05D006058 1.8e-27 127.5 295 33.2
Ah.07g198490 Amaranthus hybridus HOM05D042025 ORTHO05D006058 4.0e-27 126.3 140 59.3
Zm00001eb280850 Zea mays HOM05D005253 ORTHO05D006058 6.9e-27 125.6 293 34.8
HPP92_015550 Vanilla planifolia HOM05D005253 ORTHO05D006058 1.2e-26 124.8 278 34.9
arahy.Tifrunner.gnm1.ann1.4B3W67 Arachis hypogaea HOM05D005253 ORTHO05D006058 2.0e-26 124.0 293 35.2
CAN.G982.39 Capsicum annuum HOM05D005253 ORTHO05D006058 3.4e-26 123.2 399 31.3
BcaB08g37286 Brassica carinata HOM05D005460 ORTHO05D006058 4.5e-26 122.9 254 37.0
Nitab4.5_0001797g0020 Nicotiana tabacum HOM05D005253 ORTHO05D006058 4.5e-26 122.9 249 39.0
Lj9C438G4 Lonicera japonica HOM05D005253 ORTHO05D006058 2.2e-25 120.6 279 35.8
arahy.Tifrunner.gnm1.ann1.U6KDHT Arachis hypogaea HOM05D005253 ORTHO05D006058 4.9e-25 119.4 293 34.1
CDE02G3817 Ceratophyllum demersum HOM05D005253 ORTHO05D006058 4.9e-25 119.4 275 34.5
Ah.07g198550 Amaranthus hybridus HOM05D042025 ORTHO05D006058 1.1e-24 118.2 100 71.0
CsaV3_1G006260 Cucumis sativus L. HOM05D005253 ORTHO05D006058 3.5e-23 113.2 297 35.7
Carub.0006s0700 Capsella rubella HOM05D005253 ORTHO05D006058 5.1e-22 109.4 283 33.9
Os06g0284800 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 1.7e-17 94.4 289 30.8
Nn4g23536 Nelumbo nucifera HOM05D005253 ORTHO05D006058 2.2e-17 94.0 90 58.9
Os09g0476000 Oryza sativa ssp. japonica HOM05D005253 ORTHO05D006058 2.2e-17 94.0 192 41.1
Peaxi162Scf00091g00143 Petunia axillaris HOM05D005253 ORTHO05D006058 6.0e-15 85.9 157 38.2
Actinidia04795 Actinidia chinensis HOM05D005253 ORTHO05D006058 5.1e-14 82.8 156 40.4
TAR629G1609 Trochodendron aralioides HOM05D004464 ORTHO05D005135 2.2e-12 77.4 291 30.9
Ah.07g198540 Amaranthus hybridus HOM05D042025 ORTHO05D006058 4.8e-12 76.3 66 71.2
Zm00001eb315970 Zea mays HOM05D005253 ORTHO05D006058 6.9e-11 72.4 190 35.3
SEGI_36320 Sequoiadendron giganteum HOM05D005253 ORTHO05D006058 1.5e-10 71.2 333 28.5
Oeu051243.1 Olea europaea HOM05D005253 ORTHO05D006058 2.6e-10 70.5 87 49.4
PSO063G4277 Papaver somniferum HOM05D005253 ORTHO05D006058 3.8e-09 66.6 90 46.7
Actinidia04794 Actinidia chinensis HOM05D005253 ORTHO05D006058 6.5e-09 65.9 84 44.0
Actinidia10441 Actinidia chinensis HOM05D005253 ORTHO05D006058 1.9e-08 64.3 60 53.3
Oeu014549.1 Olea europaea HOM05D005253 ORTHO05D006058 2.5e-08 63.9 46 65.2
Nn4g23537 Nelumbo nucifera HOM05D005253 ORTHO05D006058 3.2e-08 63.5 46 63.0
BraA02t04942Z Brassica rapa HOM05D009919 ORTHO05D012044 9.3e-08 62.0 125 34.4
BolC2t06302H Brassica oleracea HOM05D009919 ORTHO05D012044 7.9e-07 58.9 111 36.9
C02p03410 Brassica napus HOM05D009919 ORTHO05D012044 1.3e-06 58.2 111 36.9


User provided reference genes

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