Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.5e-78 296.2 156 100.0
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 9.0e-52 207.2 157 75.2
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 5.5e-41 171.4 152 71.7
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 7.1e-41 171.0 155 69.0
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 3.5e-40 168.7 157 67.5
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.6e-27 125.9 162 54.3
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 7.9e-24 114.4 128 51.6
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 7.9e-24 114.4 114 58.8
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 2.3e-23 112.8 140 50.0
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 6.7e-23 111.3 147 49.0
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 1.1e-22 110.5 117 56.4
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 1.1e-22 110.5 148 49.3
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 2.0e-22 109.8 125 55.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 2.6e-22 109.4 121 56.2
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.6e-22 109.4 126 52.4
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 3.3e-22 109.0 128 52.3
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 3.3e-22 109.0 117 55.6
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 4.4e-22 108.6 122 54.9
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 5.7e-22 108.2 70 75.7
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 5.7e-22 108.2 131 55.0
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 5.7e-22 108.2 131 51.1
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 5.7e-22 108.2 139 48.9
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 1.3e-21 107.1 127 53.5
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 1.7e-21 106.7 124 54.0
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 1.7e-21 106.7 124 54.0
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 1.7e-21 106.7 107 58.9
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 2.2e-21 106.3 61 83.6
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 2.2e-21 106.3 61 83.6
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 2.2e-21 106.3 61 83.6
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.8e-21 105.9 91 62.6
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 3.7e-21 105.5 102 58.8
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 4.8e-21 105.1 126 52.4
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 4.8e-21 105.1 61 82.0
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 6.3e-21 104.8 113 54.9
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 6.3e-21 104.8 148 48.6
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 6.3e-21 104.8 143 49.0
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 8.2e-21 104.4 91 60.4
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 8.2e-21 104.4 101 57.4
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 8.2e-21 104.4 91 60.4
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 8.2e-21 104.4 101 57.4
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 8.2e-21 104.4 68 77.9
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.1e-20 104.0 71 70.4
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 1.1e-20 104.0 116 56.9
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 1.1e-20 104.0 82 65.9
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.1e-20 104.0 103 59.2
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 1.1e-20 104.0 106 59.4
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 1.1e-20 104.0 127 48.8
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 1.4e-20 103.6 91 60.4
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.4e-20 103.6 125 52.0
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 1.4e-20 103.6 105 54.3
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.4e-20 103.6 61 82.0
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.4e-20 103.6 132 49.2
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.4e-20 103.6 64 79.7
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.8e-20 103.2 61 80.3
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 2.4e-20 102.8 111 55.0
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 3.1e-20 102.4 114 53.5
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 3.1e-20 102.4 58 84.5
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 3.1e-20 102.4 143 48.3
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 3.1e-20 102.4 64 78.1
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.1e-20 102.4 64 78.1
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 4.1e-20 102.1 138 49.3
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 4.1e-20 102.1 115 53.9
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 4.1e-20 102.1 115 53.9
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 4.1e-20 102.1 64 76.6
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 4.1e-20 102.1 139 48.9
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.1e-20 102.1 104 59.6
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 4.1e-20 102.1 147 46.9
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 5.3e-20 101.7 115 53.0
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 5.3e-20 101.7 144 49.3
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 5.3e-20 101.7 155 44.5
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 7.0e-20 101.3 91 62.6
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 7.0e-20 101.3 99 57.6
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 7.0e-20 101.3 87 62.1
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 7.0e-20 101.3 81 64.2
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 7.0e-20 101.3 85 65.9
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 9.1e-20 100.9 103 56.3
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 9.1e-20 100.9 67 74.6
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.2e-19 100.5 95 60.0
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 1.2e-19 100.5 95 60.0
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 1.2e-19 100.5 91 62.6
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 1.2e-19 100.5 120 54.2
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 1.2e-19 100.5 101 56.4
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.5e-19 100.1 147 47.6
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 1.5e-19 100.1 114 53.5
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 1.5e-19 100.1 141 44.0
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 2.0e-19 99.8 91 61.5
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-19 99.8 137 51.1
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.0e-19 99.8 135 49.6
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.6e-19 99.4 109 56.9
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 2.6e-19 99.4 109 56.9
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.5e-19 99.0 102 56.9
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.5e-19 98.6 140 50.0
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 4.5e-19 98.6 99 56.6
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 5.9e-19 98.2 137 50.4
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 5.9e-19 98.2 130 54.6
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 1.0e-18 97.4 139 48.2
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 1.3e-18 97.1 112 50.0
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 1.3e-18 97.1 122 49.2
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 1.3e-18 97.1 135 50.4
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 1.7e-18 96.7 134 48.5
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 1.7e-18 96.7 125 49.6
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 2.9e-18 95.9 64 73.4
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 2.9e-18 95.9 139 50.4
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.9e-18 95.9 98 59.2
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 2.9e-18 95.9 98 59.2
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 3.8e-18 95.5 92 58.7
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 3.8e-18 95.5 123 52.0
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 5.0e-18 95.1 141 49.6
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.0e-18 95.1 131 47.3
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 5.0e-18 95.1 101 57.4
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 6.5e-18 94.7 97 56.7
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 8.5e-18 94.4 151 43.0
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 1.4e-17 93.6 142 46.5
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.9e-17 93.2 98 58.2
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 1.9e-17 93.2 79 63.3
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 2.5e-17 92.8 110 51.8
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.5e-17 92.8 140 45.7
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 5.5e-17 91.7 136 44.1
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 9.4e-17 90.9 129 47.3
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 9.4e-17 90.9 129 47.3
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 2.7e-16 89.4 143 44.8
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 8.0e-16 87.8 61 70.5
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.0e-16 87.8 65 66.2
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.0e-16 87.8 149 38.9
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 1.4e-15 87.0 141 41.1
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 3.0e-15 85.9 173 38.2
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 3.9e-15 85.5 104 49.0
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 5.2e-15 85.1 73 64.4
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 6.7e-15 84.7 102 51.0
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-14 83.2 109 49.5
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 2.0e-14 83.2 150 41.3
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.7e-14 81.6 126 43.7
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 1.3e-13 80.5 114 44.7
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 2.2e-13 79.7 154 37.7
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.8e-13 79.3 110 48.2
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 4.8e-13 78.6 110 49.1
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 8.2e-13 77.8 83 51.8
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.1e-12 75.9 147 38.1
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 9.1e-12 74.3 131 41.2
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 9.1e-12 74.3 131 41.2
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 4.5e-11 72.0 97 41.2
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 5.9e-11 71.6 101 43.6
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 3.8e-10 68.9 78 50.0
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 5.0e-10 68.6 130 40.8
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 2.3e-07 59.7 75 44.0
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 1.5e-06 57.0 34 73.5
Ah.16g109020 Amaranthus hybridus HOM05D004643 ORTHO05D059934 2.6e-06 56.2 31 80.6


User provided reference genes

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