Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047280 Amaranthus hybridus HOM05D007960 ORTHO05D010026 3.4e-65 251.5 129 100.0
EL10Ac5g11226 Beta vulgaris HOM05D007960 ORTHO05D010026 6.3e-27 124.4 138 53.6
AUR62036925 Chenopodium quinoa HOM05D007960 ORTHO05D010026 1.2e-22 110.2 72 79.2
Cc04_g07760 Coffea canephora HOM05D007960 ORTHO05D010026 1.5e-15 86.7 97 49.5
Sc04g0003850 Simmondsia chinensis HOM05D007960 ORTHO05D010026 8.0e-14 80.9 120 44.2
QL10p022177 Quercus lobata HOM05D007960 ORTHO05D010026 1.8e-13 79.7 95 48.4
Nitab4.5_0004342g0110 Nicotiana tabacum HOM05D007960 ORTHO05D010026 5.2e-13 78.2 103 42.7
Peaxi162Scf00017g03010 Petunia axillaris HOM05D007960 ORTHO05D001491 6.8e-13 77.8 101 50.5
Sc04g0003840 Simmondsia chinensis HOM05D007960 ORTHO05D010026 6.8e-13 77.8 120 44.2
Solyc03g114430.1 Solanum lycopersicum HOM05D007960 ORTHO05D010026 6.8e-13 77.8 100 44.0
Lj1g0016835 Lotus japonicus HOM05D007960 ORTHO05D010026 4.4e-12 75.1 88 52.3
Nitab4.5_0000646g0060 Nicotiana tabacum HOM05D007960 ORTHO05D010026 5.8e-12 74.7 103 41.7
PGSC0003DMG400041876 Solanum tuberosum HOM05D007960 ORTHO05D010026 5.8e-12 74.7 92 47.8
Rhsim11G0054500 Rhododendron simsii HOM05D007960 ORTHO05D010026 9.8e-12 73.9 102 42.2
TAR371G0138 Trochodendron aralioides HOM05D007960 ORTHO05D010026 9.8e-12 73.9 102 43.1
Atru.chr9.701 Acer truncatum HOM05D007960 ORTHO05D010026 2.2e-11 72.8 106 48.1
Hma1.2p1_0340F.1_g130110 Hydrangea macrophylla HOM05D007960 ORTHO05D010026 2.2e-11 72.8 128 37.5
Rhsim08G0149000 Rhododendron simsii HOM05D007960 ORTHO05D010026 2.9e-11 72.4 92 43.5
Nn3g17652 Nelumbo nucifera HOM05D007960 ORTHO05D010026 3.7e-11 72.0 111 41.4
Sp5g29280 Schrenkiella parvula HOM05D007960 ORTHO05D010026 8.3e-11 70.9 134 37.3
AL2G33950 Arabidopsis lyrata HOM05D007960 ORTHO05D010026 2.4e-10 69.3 114 42.1
Phvul.003G179700 Phaseolus vulgaris HOM05D007960 ORTHO05D010026 2.4e-10 69.3 114 40.4
Sopen03g033530 Solanum pennellii HOM05D007960 ORTHO05D010026 2.4e-10 69.3 100 42.0
Medtr2g056070 Medicago truncatula HOM05D007960 ORTHO05D010026 3.2e-10 68.9 113 47.8
Sc04g0003950 Simmondsia chinensis HOM05D007960 ORTHO05D010026 5.4e-10 68.2 120 41.7
TPR.G31006 Trifolium pratense HOM05D007960 ORTHO05D010026 7.0e-10 67.8 114 44.7
VMungo1215G0525 Vigna mungo HOM05D007960 ORTHO05D010026 9.2e-10 67.4 73 50.7
Prupe.5G214000 Prunus persica HOM05D007960 ORTHO05D010026 1.2e-09 67.0 107 43.9
C06p48150 Brassica napus HOM05D007960 ORTHO05D010026 1.6e-09 66.6 103 41.7
Psat1g027680 Pisum sativum HOM05D007960 ORTHO05D010026 1.6e-09 66.6 114 41.2
BcaC08g46834 Brassica carinata HOM05D007960 ORTHO05D010026 2.0e-09 66.2 103 40.8
A07p39920 Brassica napus HOM05D007960 ORTHO05D010026 2.7e-09 65.9 103 40.8
BraA07t31538Z Brassica rapa HOM05D007960 ORTHO05D010026 2.7e-09 65.9 103 40.8
Thecc.03G114600 Theobroma cacao HOM05D007960 ORTHO05D010026 2.7e-09 65.9 55 58.2
BcaC08g46805 Brassica carinata HOM05D007960 ORTHO05D010026 4.6e-09 65.1 103 40.8
BolC6t39852H Brassica oleracea HOM05D007960 ORTHO05D010026 4.6e-09 65.1 103 40.8
Cpa.g.sc13.82 Carica papaya HOM05D007960 ORTHO05D010026 4.6e-09 65.1 112 40.2
Dinv38606 Davidia involucrata HOM05D000227 ORTHO05D001491 4.6e-09 65.1 107 43.0
Glyma.17G123900 Glycine max HOM05D007960 ORTHO05D010026 4.6e-09 65.1 112 38.4
PSO782G5681 Papaver somniferum HOM05D007960 ORTHO05D010026 4.6e-09 65.1 116 36.2
AT1G74055 Arabidopsis thaliana HOM05D007960 ORTHO05D010026 6.0e-09 64.7 114 40.4
Lsat_1_v5_gn_1_15660 Lactuca sativa HOM05D007960 ORTHO05D010026 6.0e-09 64.7 119 39.5
Ciclev10024471m.g Citrus clementina HOM05D007960 ORTHO05D010026 1.0e-08 63.9 77 48.1
Haze_18568 Corylus avellana HOM05D007960 ORTHO05D010026 1.3e-08 63.5 100 41.0
Haze_18570 Corylus avellana HOM05D007960 ORTHO05D010026 1.3e-08 63.5 100 41.0
Thhalv10019432m.g Eutrema salsugineum HOM05D007960 ORTHO05D010026 3.0e-08 62.4 130 36.9
CiPaw.15G122900 Carya illinoinensis HOM05D007960 ORTHO05D010026 3.9e-08 62.0 96 40.6
Ca_02635_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 8.6e-08 60.8 69 52.2
Ca_30215_v3 Cicer arietinum L. HOM05D007960 ORTHO05D010026 8.6e-08 60.8 69 52.2
MD14G1219300 Malus domestica HOM05D007960 ORTHO05D010026 1.1e-07 60.5 53 54.7
FAN18G0932 Fragaria x ananassa HOM05D000227 ORTHO05D001491 3.3e-07 58.9 133 35.3
Carub.0002s2086 Capsella rubella HOM05D007960 ORTHO05D010026 4.3e-07 58.5 86 48.8
ECA247G3950 Erigeron canadensis HOM05D007960 ORTHO05D010026 7.3e-07 57.8 109 33.9
RcHm_v2.0_Chr7g0184281 Rosa chinensis HOM05D007960 ORTHO05D010026 9.5e-07 57.4 133 36.1
Aa31LG4G4360 Aethionema arabicum HOM05D007960 ORTHO05D010026 1.2e-06 57.0 122 38.5
FAN13G1649 Fragaria x ananassa HOM05D000227 ORTHO05D001491 1.2e-06 57.0 97 39.2
Gohir.A03G074200 Gossypium hirsutum HOM05D007960 ORTHO05D010026 1.6e-06 56.6 120 35.0
Lalb_Chr13g0302531 Lupinus albus HOM05D007960 ORTHO05D010026 1.6e-06 56.6 54 55.6
THA.LOC104812118 Tarenaya hassleriana HOM05D007960 ORTHO05D010026 2.1e-06 56.2 125 39.2
CARHR067210 Cardamine hirsuta HOM05D007960 ORTHO05D010026 3.6e-06 55.5 102 39.2
Gohir.D03G100500 Gossypium hirsutum HOM05D007960 ORTHO05D010026 4.7e-06 55.1 120 35.0
Gorai.003G106000 Gossypium raimondii HOM05D007960 ORTHO05D010026 4.7e-06 55.1 120 35.0
Manes.01G022400 Manihot esculenta HOM05D007960 ORTHO05D010026 6.2e-06 54.7 96 43.8


User provided reference genes

Program Settings