Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047220 Amaranthus hybridus HOM05D005215 ORTHO05D006382 3.9e-113 411.4 196 100.0
AUR62042083 Chenopodium quinoa HOM05D005215 ORTHO05D006382 2.5e-99 365.5 211 83.4
EL10Ac4g07754 Beta vulgaris HOM05D005215 ORTHO05D006382 7.2e-99 364.0 213 82.6
Hund06789 Selenicereus undatus HOM05D005215 ORTHO05D006382 8.6e-92 340.5 212 77.4
AUR62041518 Chenopodium quinoa HOM05D005215 ORTHO05D006382 4.2e-91 338.2 231 73.2
TWI15G0816 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 1.0e-89 333.6 209 76.6
Cc02_g09580 Coffea canephora HOM05D005215 ORTHO05D006382 1.8e-89 332.8 211 73.9
Dinv11822 Davidia involucrata HOM05D005215 ORTHO05D006382 1.8e-89 332.8 212 74.5
SalBow3G3150 Salvia bowleyana HOM05D005215 ORTHO05D006382 3.0e-89 332.0 209 75.1
Nitab4.5_0009484g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 8.9e-89 330.5 209 75.1
MBI01_g04055_MAGBIO Magnolia biondii HOM05D005215 ORTHO05D006382 1.5e-88 329.7 209 73.7
arahy.Tifrunner.gnm1.ann1.E5H8ET Arachis hypogaea HOM05D005215 ORTHO05D006382 2.0e-88 329.3 213 74.2
Sc06g0002380 Simmondsia chinensis HOM05D005215 ORTHO05D006382 2.6e-88 328.9 209 75.1
Hma1.2p1_0756F.1_g213190 Hydrangea macrophylla HOM05D005215 ORTHO05D006382 4.4e-88 328.2 209 74.6
Nitab4.5_0002586g0020 Nicotiana tabacum HOM05D005215 ORTHO05D006382 4.4e-88 328.2 209 74.6
Atru.chr12.1046 Acer truncatum HOM05D005215 ORTHO05D006382 5.7e-88 327.8 212 73.1
ClCG08G008310 Citrullus lanatus HOM05D005215 ORTHO05D006382 5.7e-88 327.8 209 73.7
PGR044G2198 Punica granatum HOM05D005215 ORTHO05D006382 1.3e-87 326.6 211 73.9
vmacro07260 Vaccinium macrocarpon HOM05D005215 ORTHO05D006382 1.3e-87 326.6 207 74.4
Peaxi162Scf00125g00233 Petunia axillaris HOM05D005215 ORTHO05D006382 1.7e-87 326.2 209 73.7
CAN.G1417.3 Capsicum annuum HOM05D005215 ORTHO05D006382 2.2e-87 325.9 209 74.6
GSVIVG01010684001 Vitis vinifera HOM05D005215 ORTHO05D006382 2.2e-87 325.9 206 76.2
Nn6g34863 Nelumbo nucifera HOM05D005215 ORTHO05D006382 2.8e-87 325.5 209 72.7
Actinidia34727 Actinidia chinensis HOM05D005215 ORTHO05D006382 4.9e-87 324.7 212 73.1
Actinidia18624 Actinidia chinensis HOM05D005215 ORTHO05D006382 6.3e-87 324.3 199 77.4
Migut.F00868 Erythranthe guttata HOM05D005215 ORTHO05D006382 6.3e-87 324.3 212 72.6
SGA_v2.0_scaffold329G48861 Striga asiatica HOM05D005215 ORTHO05D006382 6.3e-87 324.3 212 71.7
Aqoxy4G02757 Aquilegia oxysepala HOM05D005215 ORTHO05D006382 8.3e-87 323.9 209 73.7
Lsat_1_v5_gn_2_104201 Lactuca sativa HOM05D005215 ORTHO05D006382 8.3e-87 323.9 209 72.7
TPR.G2443 Trifolium pratense HOM05D005215 ORTHO05D006382 8.3e-87 323.9 210 73.8
TAR369G1081 Trochodendron aralioides HOM05D005215 ORTHO05D006382 8.3e-87 323.9 212 74.1
Solyc11g006770.3 Solanum lycopersicum HOM05D005215 ORTHO05D006382 1.1e-86 323.6 209 73.7
Sopen11g002700 Solanum pennellii HOM05D005215 ORTHO05D006382 1.1e-86 323.6 209 73.7
PGSC0003DMG400023967 Solanum tuberosum HOM05D005215 ORTHO05D006382 1.1e-86 323.6 209 73.7
QL04p046761 Quercus lobata HOM05D005215 ORTHO05D006382 1.4e-86 323.2 212 71.7
Sed0008445 Sechium edule HOM05D005215 ORTHO05D006382 1.4e-86 323.2 209 73.2
CSS0033765 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 2.4e-86 322.4 212 73.1
Ciclev10016681m.g Citrus clementina HOM05D005215 ORTHO05D006382 2.4e-86 322.4 212 71.7
Medtr1g111860 Medicago truncatula HOM05D005215 ORTHO05D006382 3.1e-86 322.0 210 73.3
MSTRG.27562 Avicennia marina HOM05D005215 ORTHO05D006382 4.1e-86 321.6 212 71.7
Migut.C00229 Erythranthe guttata HOM05D005215 ORTHO05D006382 4.1e-86 321.6 212 71.7
Lj5g0024589 Lotus japonicus HOM05D005215 ORTHO05D006382 4.1e-86 321.6 213 72.8
TAR623G0377 Trochodendron aralioides HOM05D005215 ORTHO05D006382 5.4e-86 321.2 212 72.6
CSS0044679 Camellia sinensis var. sinensis HOM05D005215 ORTHO05D006382 7.0e-86 320.9 212 72.6
CiPaw.13G040900 Carya illinoinensis HOM05D005215 ORTHO05D006382 7.0e-86 320.9 212 73.6
CDE06G1220 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 7.0e-86 320.9 211 70.1
Migut.B01734 Erythranthe guttata HOM05D005215 ORTHO05D006382 1.6e-85 319.7 212 71.2
arahy.Tifrunner.gnm1.ann1.KL5LPC Arachis hypogaea HOM05D005215 ORTHO05D006382 2.0e-85 319.3 236 67.8
CiPaw.14G033600 Carya illinoinensis HOM05D005215 ORTHO05D006382 2.0e-85 319.3 212 73.6
TWI63G0161 Tripterygium wilfordii HOM05D005215 ORTHO05D006382 2.7e-85 318.9 209 72.7
AL4G36010 Arabidopsis lyrata HOM05D005215 ORTHO05D006382 4.5e-85 318.2 208 72.1
Lsat_1_v5_gn_0_8140 Lactuca sativa HOM05D005215 ORTHO05D006382 4.5e-85 318.2 209 71.3
AT2G38710 Arabidopsis thaliana HOM05D005215 ORTHO05D006382 7.8e-85 317.4 209 72.2
HanXRQChr11g0321671 Helianthus annuus HOM05D005215 ORTHO05D006382 7.8e-85 317.4 209 70.8
ECA232G3141 Erigeron canadensis HOM05D005215 ORTHO05D006382 1.0e-84 317.0 209 71.3
HanXRQChr07g0194041 Helianthus annuus HOM05D005215 ORTHO05D006382 1.3e-84 316.6 209 70.8
Thecc.10G114600 Theobroma cacao HOM05D005215 ORTHO05D006382 1.3e-84 316.6 212 72.2
CDE08G0922 Ceratophyllum demersum HOM05D005215 ORTHO05D006382 1.7e-84 316.2 211 68.7
Psat0s1904g0160 Pisum sativum HOM05D005215 ORTHO05D006382 2.3e-84 315.8 210 71.4
Gorai.009G303500 Gossypium raimondii HOM05D005215 ORTHO05D006382 6.6e-84 314.3 212 71.7
Potri.010G240000 Populus trichocarpa HOM05D005215 ORTHO05D006382 6.6e-84 314.3 212 71.2
Carub.0004s2071 Capsella rubella HOM05D005215 ORTHO05D006382 8.6e-84 313.9 207 72.0
Sed0014754 Sechium edule HOM05D005215 ORTHO05D006382 1.9e-83 312.8 209 69.4
Gohir.D05G288400 Gossypium hirsutum HOM05D005215 ORTHO05D006382 2.5e-83 312.4 212 71.2
Eucgr.J00268 Eucalyptus grandis HOM05D005215 ORTHO05D006382 3.3e-83 312.0 212 70.8
MD02G1262000 Malus domestica HOM05D005215 ORTHO05D006382 3.3e-83 312.0 212 69.3
Gohir.A05G287300 Gossypium hirsutum HOM05D005215 ORTHO05D006382 4.3e-83 311.6 212 71.2
Manes.18G138580 Manihot esculenta HOM05D005215 ORTHO05D006382 4.3e-83 311.6 212 70.3
THA.LOC104801304 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 4.3e-83 311.6 209 71.3
THA.LOC104811337 Tarenaya hassleriana HOM05D005215 ORTHO05D006382 5.6e-83 311.2 209 69.9
CARHR133400 Cardamine hirsuta HOM05D005215 ORTHO05D006382 7.3e-83 310.8 208 71.2
PSO339G4522 Papaver somniferum HOM05D005215 ORTHO05D006382 7.3e-83 310.8 212 69.3
Sabra08G0012600 Salix brachista HOM05D005215 ORTHO05D006382 7.3e-83 310.8 209 71.3
Os10g0573100 Oryza sativa ssp. japonica HOM05D005215 ORTHO05D006382 1.6e-82 309.7 212 69.3
DCAR_006336 Daucus carota HOM05D005215 ORTHO05D006382 2.1e-82 309.3 206 71.8
Thhalv10017213m.g Eutrema salsugineum HOM05D005215 ORTHO05D006382 2.1e-82 309.3 207 71.0
Sp4g21070 Schrenkiella parvula HOM05D005215 ORTHO05D006382 2.1e-82 309.3 207 70.5
HPP92_020962 Vanilla planifolia HOM05D005215 ORTHO05D006382 2.8e-82 308.9 209 67.5
Prupe.2G069900 Prunus persica HOM05D005215 ORTHO05D006382 3.6e-82 308.5 212 67.9
BcaC02g07452 Brassica carinata HOM05D005215 ORTHO05D006382 6.1e-82 307.8 207 70.0
BraA04t18418Z Brassica rapa HOM05D005215 ORTHO05D006382 6.1e-82 307.8 207 70.5
Duzib114G0243 Durio zibethinus HOM05D005215 ORTHO05D006382 8.0e-82 307.4 212 69.8
MD07G1058400 Malus domestica HOM05D005215 ORTHO05D006382 8.0e-82 307.4 212 68.9
Aa31LG5G21000 Aethionema arabicum HOM05D005215 ORTHO05D006382 1.4e-81 306.6 209 68.9
ATR0776G030 Amborella trichopoda HOM05D005215 ORTHO05D006382 3.0e-81 305.4 209 69.9
Oeu030225.2 Olea europaea HOM05D005215 ORTHO05D006382 3.0e-81 305.4 219 68.0
RcHm_v2.0_Chr7g0197741 Rosa chinensis HOM05D005215 ORTHO05D006382 3.0e-81 305.4 200 70.5
PSO384G1677 Papaver somniferum HOM05D005215 ORTHO05D006382 4.0e-81 305.1 209 69.4
Potri.008G019200 Populus trichocarpa HOM05D005215 ORTHO05D006382 5.2e-81 304.7 209 68.9
C03p25540 Brassica napus HOM05D005215 ORTHO05D006382 1.2e-80 303.5 205 70.7
C04p66830 Brassica napus HOM05D005215 ORTHO05D006382 1.2e-80 303.5 207 69.1
Cpa.g.sc704.2 Carica papaya HOM05D005215 ORTHO05D006382 1.2e-80 303.5 194 74.2
BolC4t28184H Brassica oleracea HOM05D005215 ORTHO05D006382 1.5e-80 303.1 207 69.1
CANSAT56G3442 Cannabis sativa HOM05D005215 ORTHO05D006382 1.5e-80 303.1 212 68.4
BolC3t14941H Brassica oleracea HOM05D005215 ORTHO05D006382 2.0e-80 302.8 205 70.7
Glyma.20G074500 Glycine max HOM05D005215 ORTHO05D006382 2.0e-80 302.8 206 70.4
BraA03t11391Z Brassica rapa HOM05D005215 ORTHO05D006382 2.6e-80 302.4 205 70.2
FAN13G0513 Fragaria x ananassa HOM05D005215 ORTHO05D006382 3.4e-80 302.0 212 67.5
A03p21550 Brassica napus HOM05D005215 ORTHO05D006382 7.5e-80 300.8 205 69.8
FvH4_5g02370 Fragaria vesca HOM05D005215 ORTHO05D006382 2.9e-79 298.9 212 67.0
SEGI_01358 Sequoiadendron giganteum HOM05D005215 ORTHO05D006382 3.7e-79 298.5 205 70.7
FAN18G1091 Fragaria x ananassa HOM05D005215 ORTHO05D006382 8.3e-79 297.4 212 66.5
PSO339G6572 Papaver somniferum HOM05D005215 ORTHO05D006382 1.4e-78 296.6 207 66.2
FAN04G2904 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.9e-78 296.2 212 66.5
Phvul.007G235600 Phaseolus vulgaris HOM05D005215 ORTHO05D006382 5.4e-78 294.7 213 67.1
Glyma.10G123100 Glycine max HOM05D005215 ORTHO05D006382 1.2e-77 293.5 205 68.3
PSO801G0072 Papaver somniferum HOM05D005215 ORTHO05D006382 2.7e-77 292.4 207 66.2
VMungo0720G2906 Vigna mungo HOM05D005215 ORTHO05D006382 2.7e-77 292.4 205 67.3
SMO331G0011 Selaginella moellendorffii HOM05D005215 ORTHO05D006382 4.6e-77 291.6 205 67.3
Oeu026607.3 Olea europaea HOM05D005215 ORTHO05D006382 2.3e-76 289.3 295 52.9
Zm00001eb390460 Zea mays HOM05D005215 ORTHO05D006382 8.6e-76 287.3 207 64.3
Haze_03299 Corylus avellana HOM05D005215 ORTHO05D006382 2.5e-75 285.8 252 59.5
Pp3c3_21710 Physcomitrium patens HOM05D005215 ORTHO05D006382 2.5e-75 285.8 209 64.6
AagrBONN_evm.TU.Sc2ySwM_117.3510 Anthoceros agrestis HOM05D005215 ORTHO05D006382 9.5e-75 283.9 202 66.8
Mapoly0059s0056 Marchantia polymorpha HOM05D005215 ORTHO05D006382 9.5e-75 283.9 206 65.0
Lj3A925G70 Lonicera japonica HOM05D005215 ORTHO05D006382 1.7e-71 273.1 173 75.1
MELO3C019899.2 Cucumis melo HOM05D005215 ORTHO05D006382 5.4e-70 268.1 169 75.1
FAN08G2650 Fragaria x ananassa HOM05D005215 ORTHO05D006382 1.2e-69 266.9 216 60.2
Dinv10934 Davidia involucrata HOM05D005215 ORTHO05D006382 2.7e-69 265.8 167 75.4
COL.COLO4_05151 Corchorus olitorius HOM05D005215 ORTHO05D006382 2.1e-58 229.6 428 36.9
Lalb_Chr06g0166341 Lupinus albus HOM05D005215 ORTHO05D006382 4.4e-56 221.9 146 72.6
Pp3c4_19060 Physcomitrium patens HOM05D005215 ORTHO05D006382 9.9e-56 220.7 164 64.6
Lalb_Chr02g0146211 Lupinus albus HOM05D005215 ORTHO05D006382 2.4e-54 216.1 146 70.5
Nn2g14190 Nelumbo nucifera HOM05D005215 ORTHO05D006382 7.8e-53 211.1 209 52.2
A04p29510 Brassica napus HOM05D005215 ORTHO05D006382 5.1e-52 208.4 146 68.5
CBR_g39962 Chara braunii HOM05D005215 ORTHO05D006382 8.1e-42 174.5 140 60.7
Cre03.g146687 Chlamydomonas reinhardtii HOM05D005215 ORTHO05D006382 1.1e-41 174.1 196 46.4
CsaV3_6G004280 Cucumis sativus L. HOM05D005215 ORTHO05D006382 4.5e-40 168.7 98 77.6
Sc06g0000010 Simmondsia chinensis HOM05D005215 ORTHO05D006382 4.2e-38 162.2 96 76.0
Haze_26289 Corylus avellana HOM05D005215 ORTHO05D006382 7.9e-37 157.9 195 43.1
Ca_25655_v3 Cicer arietinum L. HOM05D000113 ORTHO05D001798 1.5e-35 153.7 109 68.8
unitig_88.g27810 Utricularia gibba HOM05D005215 ORTHO05D006382 7.4e-35 151.4 89 77.5
BcaNung04832 Brassica carinata HOM05D005215 ORTHO05D006382 2.8e-34 149.4 95 72.6
MCO01G395 Micromonas commoda HOM05D005215 ORTHO05D006382 4.8e-34 148.7 200 43.0
Potri.008G019325 Populus trichocarpa HOM05D005215 ORTHO05D006382 3.8e-31 139.0 109 65.1
PRCOL_00005793 Prasinoderma coloniale HOM05D005215 ORTHO05D006382 3.2e-30 136.0 167 46.1
Dinv02216 Davidia involucrata HOM05D005215 ORTHO05D006382 1.2e-29 134.0 75 81.3
unitig_88.g27811 Utricularia gibba HOM05D005215 ORTHO05D006382 3.2e-22 109.4 67 71.6
Lalb_Chr06g0166351 Lupinus albus HOM05D005215 ORTHO05D006382 1.0e-20 104.4 75 61.3
Sabra16G0322800 Salix brachista HOM05D005215 ORTHO05D006382 1.9e-19 100.1 59 78.0
Cfa010328 Carpinus fangiana HOM05D005215 ORTHO05D006382 3.3e-19 99.4 79 64.6
Lalb_Chr02g0146221 Lupinus albus HOM05D005215 ORTHO05D006382 8.2e-18 94.7 67 64.2
Actinidia27053 Actinidia chinensis HOM05D005215 ORTHO05D006382 5.9e-16 88.6 57 70.2
Peaxi162Scf00959g00417 Petunia axillaris HOM05D005215 ORTHO05D306904 9.7e-11 71.2 60 61.7
Peaxi162Scf00959g00416 Petunia axillaris HOM05D005215 ORTHO05D006382 1.8e-09 67.0 40 80.0
THA.LOC104824416 Tarenaya hassleriana HOM05D006718 ORTHO05D008492 6.9e-09 65.1 32 90.6
GSVIVG01037606001 Vitis vinifera HOM05D005215 ORTHO05D014194 5.0e-07 58.9 36 75.0
Migut.F00867 Erythranthe guttata HOM05D012249 ORTHO05D014194 4.2e-06 55.8 36 69.4


User provided reference genes

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