Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 1.6e-100 369.4 182 100.0
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 3.0e-75 285.4 182 75.3
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 9.8e-74 280.4 182 72.5
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 2.2e-73 279.3 182 72.0
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.1e-72 276.9 182 72.0
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 4.1e-64 248.4 180 64.4
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.5e-61 239.2 182 63.7
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 1.8e-56 223.0 183 61.2
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 7.0e-56 221.1 189 61.9
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 1.6e-55 219.9 187 60.4
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 1.6e-55 219.9 182 58.8
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 2.0e-55 219.5 193 59.1
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 2.0e-55 219.5 189 58.2
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 3.0e-54 215.7 130 73.8
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.0e-54 215.7 133 72.9
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 3.0e-54 215.7 184 58.2
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 5.0e-54 214.9 132 73.5
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 6.6e-54 214.5 165 60.6
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 8.6e-54 214.2 130 74.6
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 8.6e-54 214.2 190 57.9
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 1.1e-53 213.8 129 72.9
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.1e-53 213.8 133 72.2
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.1e-53 213.8 190 58.9
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 1.9e-53 213.0 133 71.4
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 1.9e-53 213.0 189 57.1
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.9e-53 213.0 130 71.5
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 2.5e-53 212.6 187 56.7
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 2.5e-53 212.6 183 56.3
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 3.3e-53 212.2 134 70.1
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 3.3e-53 212.2 175 60.0
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 3.3e-53 212.2 129 74.4
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 3.3e-53 212.2 130 73.8
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.3e-53 211.8 130 73.1
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 5.6e-53 211.5 130 72.3
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 7.3e-53 211.1 132 73.5
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 7.3e-53 211.1 132 71.2
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 9.5e-53 210.7 200 55.0
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 9.5e-53 210.7 186 57.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 1.2e-52 210.3 130 72.3
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.6e-52 209.9 184 57.6
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.6e-52 209.9 130 72.3
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.6e-52 209.9 133 70.7
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 1.6e-52 209.9 186 57.0
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 1.6e-52 209.9 186 59.1
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.6e-52 209.9 183 58.5
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 2.1e-52 209.5 130 73.1
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 2.8e-52 209.1 186 57.0
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.6e-52 208.8 191 57.1
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.6e-52 208.8 189 55.0
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 3.6e-52 208.8 190 57.4
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 4.7e-52 208.4 186 57.0
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 4.7e-52 208.4 190 55.8
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 4.7e-52 208.4 130 73.1
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 4.7e-52 208.4 186 56.5
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 4.7e-52 208.4 183 55.7
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 4.7e-52 208.4 130 71.5
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 6.2e-52 208.0 130 72.3
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 6.2e-52 208.0 186 57.0
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 6.2e-52 208.0 186 57.5
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 8.0e-52 207.6 130 71.5
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 8.0e-52 207.6 171 60.2
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 8.0e-52 207.6 132 71.2
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 1.0e-51 207.2 186 57.0
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 1.0e-51 207.2 143 67.8
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.0e-51 207.2 183 58.5
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-51 207.2 130 70.0
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 1.0e-51 207.2 173 60.1
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 1.4e-51 206.8 183 58.5
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 1.4e-51 206.8 130 72.3
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.3e-51 206.1 183 57.9
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 2.3e-51 206.1 182 57.1
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 2.3e-51 206.1 130 70.8
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 2.3e-51 206.1 184 55.4
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 3.1e-51 205.7 130 69.2
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 3.1e-51 205.7 129 71.3
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 5.2e-51 204.9 187 56.7
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 5.2e-51 204.9 185 54.6
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 6.8e-51 204.5 130 69.2
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 6.8e-51 204.5 191 57.6
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 8.9e-51 204.1 189 55.6
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 1.5e-50 203.4 166 56.6
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.5e-50 203.4 183 57.4
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.5e-50 203.4 189 55.0
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 2.6e-50 202.6 138 65.9
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.6e-50 202.6 142 64.8
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 4.4e-50 201.8 139 68.3
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 4.4e-50 201.8 192 53.6
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 4.4e-50 201.8 178 56.2
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 7.5e-50 201.1 130 68.5
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 9.8e-50 200.7 186 52.7
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.7e-49 199.9 132 71.2
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 1.7e-49 199.9 130 70.8
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 2.2e-49 199.5 129 70.5
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 2.2e-49 199.5 129 69.8
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 2.9e-49 199.1 129 68.2
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 3.7e-49 198.7 181 54.7
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.9e-49 198.4 129 69.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 1.1e-48 197.2 198 52.5
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 1.9e-48 196.4 195 54.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 3.2e-48 195.7 129 66.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 5.4e-48 194.9 129 69.8
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 7.0e-48 194.5 140 65.7
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 9.2e-48 194.1 186 54.3
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.6e-47 193.4 188 54.3
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.7e-47 192.6 161 57.8
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 3.5e-47 192.2 223 46.2
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 6.0e-47 191.4 142 63.4
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 1.0e-46 190.7 114 75.4
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.3e-46 190.3 117 70.9
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.3e-46 190.3 131 66.4
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.3e-46 189.5 146 63.0
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 3.0e-46 189.1 187 53.5
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 5.0e-46 188.3 222 46.4
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 5.0e-46 188.3 133 68.4
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.5e-45 186.8 166 53.0
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 2.8e-44 182.6 208 47.6
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.7e-44 181.8 247 42.1
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.1e-43 180.6 123 66.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 2.3e-43 179.5 163 55.2
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 1.5e-42 176.8 113 69.9
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 1.3e-41 173.7 271 39.1
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 9.2e-40 167.5 116 65.5
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.9e-38 162.2 106 68.9
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 1.1e-37 160.6 143 52.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.3e-37 159.1 115 63.5
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 9.5e-37 157.5 123 57.7
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.4e-34 149.1 87 72.4
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.9e-30 135.6 114 56.1
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 3.9e-30 135.6 130 55.4
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 1.9e-29 133.3 104 59.6
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.6e-28 130.2 79 70.9
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 5.2e-27 125.2 86 67.4
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 1.2e-26 124.0 72 73.6
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 3.4e-26 122.5 72 72.2
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 2.9e-25 119.4 85 63.5
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 2.5e-21 106.3 65 64.6
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 3.6e-20 102.4 103 45.6
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 3.6e-20 102.4 75 65.3
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 3.6e-20 102.4 109 43.1
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.2e-15 87.4 66 65.2
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 2.1e-15 86.7 59 64.4
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 2.9e-09 66.2 35 80.0
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 6.0e-07 58.5 37 73.0
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 7.9e-07 58.2 52 48.1


User provided reference genes

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