Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046990 Amaranthus hybridus HOM05D001551 ORTHO05D005859 3.8e-51 204.5 103 100.0
Ah.02g114530 Amaranthus hybridus HOM05D001551 ORTHO05D005859 1.8e-40 169.1 103 83.5
EL10Ac5g11272 Beta vulgaris HOM05D001551 ORTHO05D005859 1.5e-23 112.8 267 33.7
AUR62011939 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.1e-21 106.7 283 32.2
AUR62043378 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.4e-21 106.3 287 31.7
AUR62032208 Chenopodium quinoa HOM05D001551 ORTHO05D005859 5.4e-21 104.4 285 31.6
AUR62043863 Chenopodium quinoa HOM05D001551 ORTHO05D005859 1.3e-19 99.8 57 87.7
Nn4g22121 Nelumbo nucifera HOM05D001551 ORTHO05D005859 2.1e-17 92.4 218 30.7
Hund10026 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.1e-16 90.1 53 81.1
Sc04g0000130 Simmondsia chinensis HOM05D001551 ORTHO05D005859 9.0e-16 87.0 53 79.2
Sc04g0000180 Simmondsia chinensis HOM05D001551 ORTHO05D005859 9.0e-16 87.0 53 79.2
Hund02515 Selenicereus undatus HOM05D001551 ORTHO05D005859 1.5e-15 86.3 54 74.1
TWI23G1313 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 4.4e-15 84.7 60 71.7
Carub.0008s1102 Capsella rubella HOM05D001551 ORTHO05D005859 7.6e-15 84.0 55 74.5
AL8G25230 Arabidopsis lyrata HOM05D001551 ORTHO05D005859 1.3e-14 83.2 55 70.9
AT5G51020 Arabidopsis thaliana HOM05D001551 ORTHO05D005859 1.3e-14 83.2 55 70.9
CARHR257170 Cardamine hirsuta HOM05D001551 ORTHO05D005859 2.2e-14 82.4 55 70.9
Prupe.5G140300 Prunus persica HOM05D001551 ORTHO05D005859 3.8e-14 81.6 55 69.1
MD14G1145900 Malus domestica HOM05D001551 ORTHO05D005859 4.9e-14 81.3 55 69.1
Sp6g13170 Schrenkiella parvula HOM05D001551 ORTHO05D005859 8.4e-14 80.5 55 67.3
A03p16410 Brassica napus HOM05D001551 ORTHO05D005859 1.1e-13 80.1 55 65.5
BraA03t10931Z Brassica rapa HOM05D001551 ORTHO05D005859 1.1e-13 80.1 55 65.5
Gohir.D11G042000 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.4e-13 79.7 56 64.3
Gorai.007G045200 Gossypium raimondii HOM05D001551 ORTHO05D005859 1.4e-13 79.7 56 64.3
TWI39G0428 Tripterygium wilfordii HOM05D001551 ORTHO05D005859 1.4e-13 79.7 57 68.4
Gohir.A11G038800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.9e-13 79.3 56 64.3
MD06G1129000 Malus domestica HOM05D001551 ORTHO05D005859 2.4e-13 79.0 55 67.3
Eucgr.K02189 Eucalyptus grandis HOM05D001551 ORTHO05D005859 4.2e-13 78.2 52 76.9
Glyma.04G202400 Glycine max HOM05D001551 ORTHO05D005859 4.2e-13 78.2 57 64.9
GSVIVG01008663001 Vitis vinifera HOM05D001551 ORTHO05D005859 4.2e-13 78.2 58 65.5
Lj9C488G12 Lonicera japonica HOM05D001551 ORTHO05D005859 5.4e-13 77.8 50 70.0
Peaxi162Scf00207g00254 Petunia axillaris HOM05D001551 ORTHO05D005859 5.4e-13 77.8 50 72.0
Lj1g0018460 Lotus japonicus HOM05D001551 ORTHO05D005859 7.1e-13 77.4 56 62.5
Thecc.03G141800 Theobroma cacao HOM05D001551 ORTHO05D005859 9.3e-13 77.0 60 61.7
BcaC01g06112 Brassica carinata HOM05D001551 ORTHO05D005859 1.6e-12 76.3 56 66.1
Manes.06G127400 Manihot esculenta HOM05D001551 ORTHO05D005859 1.6e-12 76.3 56 67.9
MELO3C002387.2 Cucumis melo HOM05D001551 ORTHO05D005859 2.1e-12 75.9 58 63.8
CsaV3_1G009930 Cucumis sativus L. HOM05D001551 ORTHO05D005859 2.1e-12 75.9 58 63.8
RcHm_v2.0_Chr7g0188531 Rosa chinensis HOM05D001551 ORTHO05D005859 2.1e-12 75.9 49 71.4
Duzib205G1491 Durio zibethinus HOM05D001551 ORTHO05D005859 2.7e-12 75.5 60 60.0
Gohir.D03G110700 Gossypium hirsutum HOM05D001551 ORTHO05D005859 2.7e-12 75.5 53 64.2
Duzib084G0670 Durio zibethinus HOM05D001551 ORTHO05D005859 3.5e-12 75.1 57 61.4
Sp7g23070 Schrenkiella parvula HOM05D001551 ORTHO05D005859 3.5e-12 75.1 55 61.8
SGA_v2.0_scaffold5G02806 Striga asiatica HOM05D001551 ORTHO05D005859 3.5e-12 75.1 54 68.5
Aa31LG3G7480 Aethionema arabicum HOM05D001551 ORTHO05D005859 4.6e-12 74.7 55 61.8
Gorai.003G117100 Gossypium raimondii HOM05D001551 ORTHO05D005859 4.6e-12 74.7 53 64.2
HanXRQChr05g0155371 Helianthus annuus HOM05D001551 ORTHO05D005859 4.6e-12 74.7 46 73.9
Lsat_1_v5_gn_5_9381 Lactuca sativa HOM05D001551 ORTHO05D005859 4.6e-12 74.7 46 71.7
ECA246G1749 Erigeron canadensis HOM05D001551 ORTHO05D005859 6.0e-12 74.3 46 76.1
Hma1.2p1_0577F.1_g182180 Hydrangea macrophylla HOM05D001551 ORTHO05D005859 6.0e-12 74.3 46 73.9
Nitab4.5_0007345g0100 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.0e-12 74.3 54 66.7
Nitab4.5_0012775g0030 Nicotiana tabacum HOM05D001551 ORTHO05D005859 6.0e-12 74.3 54 66.7
TAR629G2635 Trochodendron aralioides HOM05D001551 ORTHO05D005859 6.0e-12 74.3 56 62.5
Actinidia08913 Actinidia chinensis HOM05D001551 ORTHO05D005859 7.8e-12 73.9 55 60.0
arahy.Tifrunner.gnm1.ann1.D8JD58 Arachis hypogaea HOM05D001551 ORTHO05D005859 7.8e-12 73.9 58 60.3
arahy.Tifrunner.gnm1.ann1.Q2CTBB Arachis hypogaea HOM05D001551 ORTHO05D005859 7.8e-12 73.9 58 60.3
Solyc06g068760.3 Solanum lycopersicum HOM05D001551 ORTHO05D005859 7.8e-12 73.9 54 66.7
Sopen06g026040 Solanum pennellii HOM05D001551 ORTHO05D005859 7.8e-12 73.9 54 66.7
PGSC0003DMG400025575 Solanum tuberosum HOM05D001551 ORTHO05D005859 7.8e-12 73.9 54 66.7
SGA_v2.0_scaffold37G14673 Striga asiatica HOM05D001551 ORTHO05D005859 7.8e-12 73.9 58 58.6
MSTRG.22814 Avicennia marina HOM05D001551 ORTHO05D005859 1.0e-11 73.6 55 61.8
BcaC09g50811 Brassica carinata HOM05D001551 ORTHO05D005859 1.0e-11 73.6 55 61.8
A01p16340 Brassica napus HOM05D001551 ORTHO05D005859 1.0e-11 73.6 55 61.8
C01p20490 Brassica napus HOM05D001551 ORTHO05D005859 1.0e-11 73.6 55 61.8
BolC1t01980H Brassica oleracea HOM05D001551 ORTHO05D005859 1.0e-11 73.6 55 61.8
BraA01t01589Z Brassica rapa HOM05D001551 ORTHO05D005859 1.0e-11 73.6 55 61.8
ClCG03G004050 Citrullus lanatus HOM05D001551 ORTHO05D005859 1.0e-11 73.6 61 60.7
Lalb_Chr08g0237601 Lupinus albus HOM05D001551 ORTHO05D005859 1.0e-11 73.6 56 58.9
Oeu051186.2 Olea europaea HOM05D001551 ORTHO05D005859 1.0e-11 73.6 53 60.4
CSS0002484 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 1.3e-11 73.2 55 58.2
Dinv23235 Davidia involucrata HOM05D001551 ORTHO05D005859 1.3e-11 73.2 46 71.7
TAR371G0091 Trochodendron aralioides HOM05D001551 ORTHO05D005859 1.3e-11 73.2 56 62.5
BcaNung03998 Brassica carinata HOM05D001551 ORTHO05D005859 1.7e-11 72.8 55 61.8
Thhalv10025970m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.7e-11 72.8 55 61.8
Glyma.06G163100 Glycine max HOM05D001551 ORTHO05D005859 1.7e-11 72.8 56 60.7
Gohir.A03G055800 Gossypium hirsutum HOM05D001551 ORTHO05D005859 1.7e-11 72.8 56 60.7
Cpa.g.sc2215.3 Carica papaya HOM05D001551 ORTHO05D005859 3.0e-11 72.0 46 69.6
Cc04_g05770 Coffea canephora HOM05D001551 ORTHO05D005859 3.0e-11 72.0 49 65.3
Manes.14G043800 Manihot esculenta HOM05D001551 ORTHO05D005859 3.0e-11 72.0 56 60.7
THA.LOC104811554 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 3.0e-11 72.0 53 60.4
CSS0038575 Camellia sinensis var. sinensis HOM05D001551 ORTHO05D005859 3.9e-11 71.6 58 62.1
CAN.G1089.16 Capsicum annuum HOM05D001551 ORTHO05D005859 3.9e-11 71.6 54 63.0
PSO017G1738 Papaver somniferum HOM05D001551 ORTHO05D005859 5.1e-11 71.2 56 62.5
PSO478G5149 Papaver somniferum HOM05D001551 ORTHO05D005859 5.1e-11 71.2 56 62.5
Aqoxy5G03068 Aquilegia oxysepala HOM05D001551 ORTHO05D005859 6.6e-11 70.9 53 58.5
SalBow7G1162 Salvia bowleyana HOM05D001551 ORTHO05D005859 6.6e-11 70.9 48 66.7
Atru.chr6.1937 Acer truncatum HOM05D001551 ORTHO05D005859 8.7e-11 70.5 52 63.5
Actinidia36846 Actinidia chinensis HOM05D001551 ORTHO05D005859 8.7e-11 70.5 55 56.4
Phvul.009G160500 Phaseolus vulgaris HOM05D001551 ORTHO05D005859 8.7e-11 70.5 50 64.0
COL.COLO4_37269 Corchorus olitorius HOM05D001551 ORTHO05D005859 1.1e-10 70.1 48 62.5
CiPaw.12G000400 Carya illinoinensis HOM05D001551 ORTHO05D005859 1.5e-10 69.7 43 74.4
Psat5g055440 Pisum sativum HOM05D001551 ORTHO05D005859 1.5e-10 69.7 48 64.6
Sed0019000 Sechium edule HOM05D001551 ORTHO05D005859 1.5e-10 69.7 51 66.7
vmacro16761 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 1.5e-10 69.7 55 60.0
PGR044G0460 Punica granatum HOM05D001551 ORTHO05D005859 1.9e-10 69.3 47 72.3
Rhsim12G0181300 Rhododendron simsii HOM05D001551 ORTHO05D005859 1.9e-10 69.3 48 64.6
unitig_27.g25103 Utricularia gibba HOM05D001551 ORTHO05D005859 2.5e-10 68.9 56 55.4
Ca_10874_v3 Cicer arietinum L. HOM05D001551 ORTHO05D005859 3.3e-10 68.6 48 62.5
DCAR_025640 Daucus carota HOM05D001551 ORTHO05D005859 4.3e-10 68.2 48 64.6
Medtr3g098510 Medicago truncatula HOM05D001551 ORTHO05D005859 5.6e-10 67.8 50 62.0
Migut.I00664 Erythranthe guttata HOM05D001551 ORTHO05D005859 7.3e-10 67.4 48 64.6
Potri.012G109800 Populus trichocarpa HOM05D001551 ORTHO05D005859 7.3e-10 67.4 55 52.7
Cfa018920 Carpinus fangiana HOM05D001551 ORTHO05D005859 9.6e-10 67.0 47 68.1
FAN18G2118 Fragaria x ananassa HOM05D001551 ORTHO05D005859 9.6e-10 67.0 71 52.1
QL10p000300 Quercus lobata HOM05D001551 ORTHO05D005859 9.6e-10 67.0 49 61.2
Sed0027340 Sechium edule HOM05D001551 ORTHO05D005859 9.6e-10 67.0 46 69.6
THA.LOC104808046 Tarenaya hassleriana HOM05D001551 ORTHO05D005859 9.6e-10 67.0 45 68.9
Cfa018698 Carpinus fangiana HOM05D001551 ORTHO05D005859 1.3e-09 66.6 47 66.0
Haze_07303 Corylus avellana HOM05D006543 ORTHO05D008308 1.6e-09 66.2 47 63.8
FvH4_5g09710 Fragaria vesca HOM05D001551 ORTHO05D005859 1.6e-09 66.2 70 52.9
FAN04G0171 Fragaria x ananassa HOM05D001551 ORTHO05D005859 1.6e-09 66.2 70 52.9
MBI07_g13940_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 1.6e-09 66.2 53 60.4
Sabra12G0080000 Salix brachista HOM05D001551 ORTHO05D005859 1.6e-09 66.2 55 52.7
CDE02G1325 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.1e-09 65.9 50 64.0
CDE06G0746 Ceratophyllum demersum HOM05D001551 ORTHO05D005859 2.1e-09 65.9 50 64.0
FAN08G3006 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.1e-09 65.9 47 68.1
FAN13G0525 Fragaria x ananassa HOM05D001551 ORTHO05D005859 2.1e-09 65.9 70 52.9
Ciclev10032408m.g Citrus clementina HOM05D001551 ORTHO05D005859 1.4e-08 63.2 50 58.0
Actinidia18288 Actinidia chinensis HOM05D001551 ORTHO05D005859 3.1e-08 62.0 50 62.0
Os11g0524300 Oryza sativa ssp. japonica HOM05D001551 ORTHO05D005859 3.1e-08 62.0 49 51.0
Cfa013473 Carpinus fangiana HOM05D001551 ORTHO05D005859 4.0e-08 61.6 47 61.7
MBI07_g35983_MAGBIO Magnolia biondii HOM05D001551 ORTHO05D005859 4.0e-08 61.6 54 59.3
Haze_07088 Corylus avellana HOM05D001551 ORTHO05D005859 9.0e-08 60.5 50 54.0
Dinv13710 Davidia involucrata HOM05D001551 ORTHO05D005859 9.0e-08 60.5 50 60.0
TPR.G16934 Trifolium pratense HOM05D001551 ORTHO05D005859 9.0e-08 60.5 50 54.0
Mapoly0002s0145 Marchantia polymorpha HOM05D001551 ORTHO05D005859 1.2e-07 60.1 55 56.4
Duzib084G0881 Durio zibethinus HOM05D001551 ORTHO05D005859 1.5e-07 59.7 50 56.0
Zm00001eb170550 Zea mays HOM05D001551 ORTHO05D005859 2.0e-07 59.3 49 46.9
Sc04g0000140 Simmondsia chinensis HOM05D001551 ORTHO05D005859 3.4e-07 58.5 51 58.8
Rhsim08G0198700 Rhododendron simsii HOM05D001551 ORTHO05D005859 4.5e-07 58.2 40 65.0
vmacro19115 Vaccinium macrocarpon HOM05D001551 ORTHO05D005859 4.5e-07 58.2 40 65.0
Pp3c6_23000 Physcomitrium patens HOM05D001551 ORTHO05D005859 5.8e-07 57.8 41 68.3
Thhalv10014437m.g Eutrema salsugineum HOM05D001551 ORTHO05D005859 1.7e-06 56.2 43 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1985 Anthoceros agrestis HOM05D001551 ORTHO05D005859 2.2e-06 55.8 55 49.1
Pp3c5_10130 Physcomitrium patens HOM05D001551 ORTHO05D005859 4.9e-06 54.7 55 49.1


User provided reference genes

Program Settings