Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046710 Amaranthus hybridus HOM05D005888 ORTHO05D007791 4.3e-209 731.1 371 100.0
AUR62034780 Chenopodium quinoa HOM05D005888 ORTHO05D007791 1.4e-114 417.2 486 50.2
EL10Ac5g11325 Beta vulgaris HOM05D005888 ORTHO05D007791 2.7e-107 392.9 508 46.3
QL02p071659 Quercus lobata HOM05D005888 ORTHO05D007791 2.2e-96 356.7 526 41.4
Sc03g0006610 Simmondsia chinensis HOM05D005888 ORTHO05D007791 3.7e-96 355.9 530 42.8
Duzib187G0894 Durio zibethinus HOM05D005888 ORTHO05D007791 1.8e-95 353.6 439 46.2
AUR62009505 Chenopodium quinoa HOM05D005888 ORTHO05D007791 3.5e-94 349.4 201 81.1
Nitab4.5_0005161g0030 Nicotiana tabacum HOM05D005888 ORTHO05D007791 3.3e-92 342.8 464 42.9
Nn4g22357 Nelumbo nucifera HOM05D005888 ORTHO05D007791 5.6e-92 342.0 528 39.4
Manes.15G159600 Manihot esculenta HOM05D005888 ORTHO05D007791 1.6e-91 340.5 471 42.3
Dinv33348 Davidia involucrata HOM05D005888 ORTHO05D007791 1.0e-90 337.8 526 40.1
Ciclev10014957m.g Citrus clementina HOM05D005888 ORTHO05D007791 1.4e-90 337.4 507 40.6
MD09G1012500 Malus domestica HOM05D005888 ORTHO05D007791 1.7e-88 330.5 523 38.8
GSVIVG01033109001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.2e-88 330.1 489 40.3
CiPaw.03G054300 Carya illinoinensis HOM05D005888 ORTHO05D007791 3.7e-88 329.3 511 38.9
MELO3C014874.2 Cucumis melo HOM05D005888 ORTHO05D007791 6.4e-88 328.6 520 39.2
CsaV3_3G027150 Cucumis sativus L. HOM05D005888 ORTHO05D007791 1.4e-87 327.4 503 39.8
PSO782G2046 Papaver somniferum HOM05D005888 ORTHO05D007791 7.0e-87 325.1 524 37.8
Prupe.3G304500 Prunus persica HOM05D005888 ORTHO05D007791 9.2e-87 324.7 515 39.2
RcHm_v2.0_Chr2g0175381 Rosa chinensis HOM05D005888 ORTHO05D007791 9.2e-87 324.7 475 40.4
Nitab4.5_0000559g0440 Nicotiana tabacum HOM05D005888 ORTHO05D007791 1.2e-86 324.3 544 37.7
Sed0023439 Sechium edule HOM05D005888 ORTHO05D007791 1.2e-86 324.3 463 41.3
Sopen03g001020 Solanum pennellii HOM05D005888 ORTHO05D007791 2.0e-86 323.6 463 40.8
FvH4_6g53250 Fragaria vesca HOM05D005888 ORTHO05D007791 2.7e-86 323.2 463 41.0
Potri.001G331900 Populus trichocarpa HOM05D005888 ORTHO05D007791 2.7e-86 323.2 547 39.3
Glyma.16G057700 Glycine max HOM05D005888 ORTHO05D007791 4.6e-86 322.4 510 39.2
Thecc.04G034400 Theobroma cacao HOM05D005888 ORTHO05D007791 4.6e-86 322.4 513 40.4
DCAR_021782 Daucus carota HOM05D005888 ORTHO05D007791 6.0e-86 322.0 503 39.2
Solyc03g005010.4 Solanum lycopersicum HOM05D005888 ORTHO05D007791 6.0e-86 322.0 463 40.6
ECA238G1812 Erigeron canadensis HOM05D005888 ORTHO05D001226 7.8e-86 321.6 526 38.2
TAR374G0091 Trochodendron aralioides HOM05D005888 ORTHO05D007791 7.8e-86 321.6 251 63.3
arahy.Tifrunner.gnm1.ann1.BEVL6N Arachis hypogaea HOM05D005888 ORTHO05D007791 2.3e-85 320.1 477 40.9
Peaxi162Scf00700g00115 Petunia axillaris HOM05D005888 ORTHO05D007791 3.0e-85 319.7 227 67.0
CAN.G1751.4 Capsicum annuum HOM05D005888 ORTHO05D007791 5.0e-85 318.9 227 67.0
Aqoxy5G03414 Aquilegia oxysepala HOM05D005888 ORTHO05D007791 6.6e-85 318.5 465 39.8
Lalb_Chr22g0360441 Lupinus albus HOM05D005888 ORTHO05D007791 6.6e-85 318.5 505 38.8
Gorai.011G091800 Gossypium raimondii HOM05D005888 ORTHO05D007791 1.5e-84 317.4 511 38.7
PGR083G0577 Punica granatum HOM05D005888 ORTHO05D007791 1.5e-84 317.4 513 40.0
Actinidia05914 Actinidia chinensis HOM05D005888 ORTHO05D007791 1.9e-84 317.0 508 38.4
HanXRQChr14g0450691 Helianthus annuus HOM05D005888 ORTHO05D007791 1.9e-84 317.0 224 67.9
Medtr7g029350 Medicago truncatula HOM05D005888 ORTHO05D007791 1.9e-84 317.0 506 38.9
Phvul.001G094800 Phaseolus vulgaris HOM05D005888 ORTHO05D007791 1.9e-84 317.0 514 38.5
CARHR148380 Cardamine hirsuta HOM05D005888 ORTHO05D007791 3.3e-84 316.2 518 38.6
AT3G27180 Arabidopsis thaliana HOM05D005888 ORTHO05D007791 5.6e-84 315.5 473 40.0
Atru.chr6.2554 Acer truncatum HOM05D005888 ORTHO05D007791 9.5e-84 314.7 465 40.9
arahy.Tifrunner.gnm1.ann1.269ICV Arachis hypogaea HOM05D005888 ORTHO05D007791 9.5e-84 314.7 475 40.6
Atru.chr6.2546 Acer truncatum HOM05D005888 ORTHO05D007791 1.2e-83 314.3 465 40.6
ClCG05G013410 Citrullus lanatus HOM05D005888 ORTHO05D007791 2.1e-83 313.5 545 37.6
PSO063G1934 Papaver somniferum HOM05D005888 ORTHO05D007791 2.1e-83 313.5 527 37.6
Lj1g0026523 Lotus japonicus HOM05D005888 ORTHO05D007791 2.8e-83 313.2 463 40.0
Carub.0005s0545 Capsella rubella HOM05D005888 ORTHO05D007791 4.7e-83 312.4 518 38.6
AL5G16294 Arabidopsis lyrata HOM05D005888 ORTHO05D007791 1.1e-82 311.2 504 38.9
MSTRG.15566 Avicennia marina HOM05D005888 ORTHO05D007791 1.1e-82 311.2 478 40.0
TWI36G1634 Tripterygium wilfordii HOM05D005888 ORTHO05D007791 1.1e-82 311.2 513 38.8
Lsat_1_v5_gn_2_94140 Lactuca sativa HOM05D005888 ORTHO05D007791 1.4e-82 310.8 491 39.9
CANSAT64G1138 Cannabis sativa HOM05D005888 ORTHO05D007791 3.1e-82 309.7 468 40.0
Actinidia36191 Actinidia chinensis HOM05D005888 ORTHO05D007791 4.0e-82 309.3 213 68.5
Lju41C52T2 Lonicera japonica HOM05D005888 ORTHO05D007791 4.0e-82 309.3 479 38.4
Psat3g164600 Pisum sativum HOM05D005888 ORTHO05D007791 5.2e-82 308.9 230 64.3
Eucgr.J02331 Eucalyptus grandis HOM05D005888 ORTHO05D007791 6.8e-82 308.5 502 38.0
Gohir.A10G159400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 1.2e-81 307.8 462 40.3
BolC7t44136H Brassica oleracea HOM05D005888 ORTHO05D007791 2.0e-81 307.0 523 38.4
TPR.G38314 Trifolium pratense HOM05D005888 ORTHO05D007791 3.4e-81 306.2 229 64.2
C07p36200 Brassica napus HOM05D005888 ORTHO05D007791 5.8e-81 305.4 527 38.1
Hma1.2p1_0279F.1_g112650 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 7.5e-81 305.1 436 39.9
Migut.K01458 Erythranthe guttata HOM05D005888 ORTHO05D007791 9.8e-81 304.7 479 40.3
Gohir.D10G084400 Gossypium hirsutum HOM05D005888 ORTHO05D007791 9.8e-81 304.7 511 38.2
A06p41440 Brassica napus HOM05D005888 ORTHO05D007791 1.3e-80 304.3 523 38.4
SalBow7G4553 Salvia bowleyana HOM05D005888 ORTHO05D007791 1.3e-80 304.3 473 39.1
Cpa.g.sc171.27 Carica papaya HOM05D005888 ORTHO05D007791 3.7e-80 302.8 470 39.8
Sp2g16300 Schrenkiella parvula HOM05D005888 ORTHO05D007791 8.3e-80 301.6 508 37.6
BraA06t27070Z Brassica rapa HOM05D005888 ORTHO05D007791 9.2e-79 298.1 466 38.8
Hma1.2p1_0279F.1_g112640 Hydrangea macrophylla HOM05D005888 ORTHO05D007791 2.7e-78 296.6 200 69.0
BcaC06g31013 Brassica carinata HOM05D005888 ORTHO05D007791 3.5e-78 296.2 226 63.7
PGSC0003DMG400013424 Solanum tuberosum HOM05D005888 ORTHO05D007791 1.3e-77 294.3 447 39.4
THA.LOC104823976 Tarenaya hassleriana HOM05D005888 ORTHO05D007791 1.7e-77 293.9 249 59.4
Thhalv10003965m.g Eutrema salsugineum HOM05D005888 ORTHO05D007791 2.3e-77 293.5 547 35.8
FAN05G4989 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.3e-77 293.5 249 61.4
FAN02G1540 Fragaria x ananassa HOM05D005888 ORTHO05D007791 5.1e-77 292.4 240 62.5
Cc07_g00720 Coffea canephora HOM05D005888 ORTHO05D007791 1.1e-76 291.2 505 37.0
VMungo1383G0859 Vigna mungo HOM05D005888 ORTHO05D007791 1.1e-76 291.2 265 57.7
Aa31LG2G5450 Aethionema arabicum HOM05D005888 ORTHO05D007791 4.3e-76 289.3 518 36.9
Rhsim10G0007200 Rhododendron simsii HOM05D005888 ORTHO05D007791 5.6e-76 288.9 498 36.9
FAN14G3555 Fragaria x ananassa HOM05D005888 ORTHO05D007791 3.6e-75 286.2 442 39.4
Haze_14860 Corylus avellana HOM05D005888 ORTHO05D007791 6.2e-75 285.4 400 42.2
vmacro05950 Vaccinium macrocarpon HOM05D005888 ORTHO05D007791 8.1e-75 285.0 484 36.2
Zm00001eb364480 Zea mays HOM05D005888 ORTHO05D007791 1.8e-74 283.9 251 55.4
ATR0561G016 Amborella trichopoda HOM05D005888 ORTHO05D007791 5.2e-74 282.3 230 59.6
Sabra16G0212900 Salix brachista HOM05D005888 ORTHO05D007791 6.8e-74 282.0 555 36.2
Os01g0920300 Oryza sativa ssp. japonica HOM05D005888 ORTHO05D007791 8.9e-74 281.6 219 61.2
FAN05G3931 Fragaria x ananassa HOM05D005888 ORTHO05D007791 2.9e-72 276.6 472 37.3
Cfa007240 Carpinus fangiana HOM05D005888 ORTHO05D007791 3.5e-70 269.6 435 38.6
BcaC06g33851 Brassica carinata HOM05D005888 ORTHO05D007791 1.5e-68 264.2 518 35.5
Oeu011755.2 Olea europaea HOM05D005888 ORTHO05D007791 4.3e-68 262.7 525 34.9
HPP92_006968 Vanilla planifolia HOM05D005888 ORTHO05D007791 4.7e-67 259.2 257 54.1
SGA_v2.0_scaffold47G17585 Striga asiatica HOM05D005888 ORTHO05D000781 3.2e-63 246.5 418 37.3
Mapoly0035s0136 Marchantia polymorpha HOM05D005888 ORTHO05D007791 3.0e-61 240.0 227 53.3
SMO364G0044 Selaginella moellendorffii HOM05D005888 ORTHO05D007791 6.6e-61 238.8 220 53.2
COL.COLO4_17186 Corchorus olitorius HOM05D005888 ORTHO05D007791 7.3e-60 235.3 211 57.3
CDE05G3258 Ceratophyllum demersum HOM05D005888 ORTHO05D007791 1.3e-59 234.6 251 50.2
Pp3c10_19430 Physcomitrium patens HOM05D005888 ORTHO05D007791 1.3e-59 234.6 232 51.7
Ca_11801_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 6.7e-53 212.2 177 61.6
AUR62044347 Chenopodium quinoa HOM05D005888 ORTHO05D007791 2.1e-51 207.2 203 54.7
CBR_g38076 Chara braunii HOM05D005888 ORTHO05D007791 1.8e-37 161.0 198 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2002 Anthoceros agrestis HOM05D005888 ORTHO05D007791 3.8e-32 143.3 128 54.7
RcHm_v2.0_Chr7g0179331 Rosa chinensis HOM05D005888 ORTHO05D007791 1.7e-24 117.9 78 67.9
Atru.chr6.2543 Acer truncatum HOM05D005888 ORTHO05D007791 9.4e-23 112.1 88 61.4
MCO16G034 Micromonas commoda HOM05D005888 ORTHO05D007791 2.3e-21 107.5 347 28.5
GSVIVG01006690001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.3e-19 101.7 77 66.2
FAN09G0079 Fragaria x ananassa HOM05D000071 ORTHO05D007791 2.0e-17 94.4 52 73.1
VMungo1383G0786 Vigna mungo HOM05D005888 ORTHO05D007791 2.0e-17 94.4 98 50.0
Atru.chr6.2542 Acer truncatum HOM05D005888 ORTHO05D007791 3.4e-17 93.6 99 49.5
BcaNung06416 Brassica carinata HOM05D005888 ORTHO05D007791 7.7e-17 92.4 107 50.5
Ca_27688_v3 Cicer arietinum L. HOM05D005888 ORTHO05D007791 3.8e-16 90.1 93 47.3
GSVIVG01033112001 Vitis vinifera HOM05D005888 ORTHO05D007791 1.4e-15 88.2 65 60.0
MD17G1013100 Malus domestica HOM05D005888 ORTHO05D007791 7.2e-15 85.9 98 46.9
CSS0026485 Camellia sinensis var. sinensis HOM05D005888 ORTHO05D007791 1.6e-14 84.7 65 60.0
PRCOL_00001844 Prasinoderma coloniale HOM05D005888 ORTHO05D007791 2.6e-12 77.4 211 29.4
Cre13.g578012 Chlamydomonas reinhardtii HOM05D005888 ORTHO05D007791 2.4e-10 70.9 324 23.5
GSVIVG01033118001 Vitis vinifera HOM05D005888 ORTHO05D007791 2.0e-09 67.8 73 49.3
FAN18G4156 Fragaria x ananassa HOM05D005888 ORTHO05D045398 1.9e-07 61.2 129 34.1


User provided reference genes

Program Settings