Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046680 Amaranthus hybridus HOM05D003339 ORTHO05D003847 3.0e-41 171.4 86 100.0
Ah.02g114360 Amaranthus hybridus HOM05D003339 ORTHO05D003847 1.5e-32 142.5 70 98.6
Ah.01g003930 Amaranthus hybridus HOM05D003339 ORTHO05D003847 4.8e-31 137.5 70 95.7
AUR62032157 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.8e-30 135.6 70 91.4
AUR62036913 Chenopodium quinoa HOM05D003339 ORTHO05D003847 1.8e-30 135.6 70 91.4
EL10Ac5g11212 Beta vulgaris HOM05D003339 ORTHO05D003847 3.1e-30 134.8 70 91.4
Ah.11g047320 Amaranthus hybridus HOM05D003339 ORTHO05D003847 2.5e-27 125.2 70 85.7
Ciclev10021674m.g Citrus clementina HOM05D003339 ORTHO05D003847 3.6e-26 121.3 71 83.1
Lj5A139T81 Lonicera japonica HOM05D003339 ORTHO05D003847 4.7e-26 120.9 71 81.7
Dinv36840 Davidia involucrata HOM05D003339 ORTHO05D003847 1.0e-25 119.8 71 80.3
Gohir.D03G099700 Gossypium hirsutum HOM05D003339 ORTHO05D003847 2.3e-25 118.6 71 80.3
Gorai.003G104700 Gossypium raimondii HOM05D003339 ORTHO05D003847 2.3e-25 118.6 71 80.3
Hund09974 Selenicereus undatus HOM05D003339 ORTHO05D003847 2.3e-25 118.6 70 82.9
Gohir.A03G073200 Gossypium hirsutum HOM05D003339 ORTHO05D003847 3.0e-25 118.2 71 78.9
Gohir.A07G057700 Gossypium hirsutum HOM05D003339 ORTHO05D003847 3.0e-25 118.2 71 80.3
Gohir.D07G062500 Gossypium hirsutum HOM05D003339 ORTHO05D003847 3.0e-25 118.2 71 81.7
Gorai.001G066000 Gossypium raimondii HOM05D003339 ORTHO05D003847 3.0e-25 118.2 71 80.3
Dinv38620 Davidia involucrata HOM05D003339 ORTHO05D003847 4.0e-25 117.9 71 80.3
THA.LOC104800957 Tarenaya hassleriana HOM05D003339 ORTHO05D003847 4.0e-25 117.9 72 77.8
MELO3C002061.2 Cucumis melo HOM05D003339 ORTHO05D003847 5.2e-25 117.5 72 77.8
CsaV3_1G006350 Cucumis sativus L. HOM05D003339 ORTHO05D003847 5.2e-25 117.5 72 77.8
Carub.0006s0706 Capsella rubella HOM05D003339 ORTHO05D003847 6.7e-25 117.1 72 75.0
CiPaw.15G117900 Carya illinoinensis HOM05D003339 ORTHO05D003847 6.7e-25 117.1 73 78.1
Sp6g34790 Schrenkiella parvula HOM05D003339 ORTHO05D003847 6.7e-25 117.1 72 75.0
vmacro17656 Vaccinium macrocarpon HOM05D003339 ORTHO05D003847 6.7e-25 117.1 71 80.3
Duzib084G1161 Durio zibethinus HOM05D003339 ORTHO05D003847 8.8e-25 116.7 70 78.6
Hma1.2p1_0744F.1_g211690 Hydrangea macrophylla HOM05D003339 ORTHO05D003847 8.8e-25 116.7 71 76.1
A10p28510 Brassica napus HOM05D003339 ORTHO05D003847 1.2e-24 116.3 70 77.1
CSS0003413 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 1.2e-24 116.3 71 77.5
CSS0015625 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 1.2e-24 116.3 71 77.5
Cpa.g.sc2452.1 Carica papaya HOM05D003339 ORTHO05D003847 1.2e-24 116.3 71 76.1
Actinidia01419 Actinidia chinensis HOM05D003339 ORTHO05D003847 1.5e-24 115.9 72 76.4
Cfa002184 Carpinus fangiana HOM05D003339 ORTHO05D003847 1.5e-24 115.9 71 77.5
Haze_25318 Corylus avellana HOM05D003339 ORTHO05D003847 1.5e-24 115.9 71 77.5
AT5G08160 Arabidopsis thaliana HOM05D003339 ORTHO05D003847 2.0e-24 115.5 72 75.0
ClCG04G011450 Citrullus lanatus HOM05D003339 ORTHO05D003847 2.0e-24 115.5 72 76.4
PGR083G2102 Punica granatum HOM05D003339 ORTHO05D003847 2.0e-24 115.5 79 70.9
THA.LOC104819390 Tarenaya hassleriana HOM05D003339 ORTHO05D003847 2.0e-24 115.5 72 76.4
Atru.chr9.680 Acer truncatum HOM05D003339 ORTHO05D003847 2.6e-24 115.2 70 75.7
BcaB08g37280 Brassica carinata HOM05D003339 ORTHO05D003847 2.6e-24 115.2 70 75.7
C09p68790 Brassica napus HOM05D003339 ORTHO05D003847 2.6e-24 115.2 70 75.7
BolC9t59626H Brassica oleracea HOM05D003339 ORTHO05D003847 2.6e-24 115.2 70 75.7
Thhalv10013995m.g Eutrema salsugineum HOM05D003339 ORTHO05D003847 2.6e-24 115.2 72 73.6
Sed0004218 Sechium edule HOM05D003339 ORTHO05D003847 3.3e-24 114.8 71 76.1
VMungo1215G0930 Vigna mungo HOM05D003339 ORTHO05D003847 3.3e-24 114.8 70 80.0
arahy.Tifrunner.gnm1.ann1.BZP5X4 Arachis hypogaea HOM05D003339 ORTHO05D003847 4.4e-24 114.4 71 77.5
Migut.I00403 Erythranthe guttata HOM05D003339 ORTHO05D003847 4.4e-24 114.4 70 75.7
Medtr4g112900 Medicago truncatula HOM05D003339 ORTHO05D003847 4.4e-24 114.4 70 80.0
RcHm_v2.0_Chr7g0184071 Rosa chinensis HOM05D003339 ORTHO05D003847 4.4e-24 114.4 70 78.6
TAR629G2627 Trochodendron aralioides HOM05D003339 ORTHO05D003847 4.4e-24 114.4 71 78.9
CARHR205020 Cardamine hirsuta HOM05D003339 ORTHO05D003847 5.7e-24 114.0 72 73.6
Nn4g23608 Nelumbo nucifera HOM05D003339 ORTHO05D003847 5.7e-24 114.0 72 73.6
Phvul.003G181000 Phaseolus vulgaris HOM05D003339 ORTHO05D003847 5.7e-24 114.0 70 78.6
Psat4g046920 Pisum sativum HOM05D003339 ORTHO05D003847 5.7e-24 114.0 70 80.0
Actinidia10431 Actinidia chinensis HOM05D003339 ORTHO05D003847 7.5e-24 113.6 71 76.1
AL6G18550 Arabidopsis lyrata HOM05D003339 ORTHO05D003847 7.5e-24 113.6 72 73.6
BcaB01g05625 Brassica carinata HOM05D003339 ORTHO05D003847 7.5e-24 113.6 70 74.3
C03p04130 Brassica napus HOM05D003339 ORTHO05D003847 7.5e-24 113.6 70 74.3
BolC3t12945H Brassica oleracea HOM05D003339 ORTHO05D003847 7.5e-24 113.6 70 74.3
BraA10t44899Z Brassica rapa HOM05D003339 ORTHO05D003847 7.5e-24 113.6 70 74.3
Manes.05G115900 Manihot esculenta HOM05D003339 ORTHO05D003847 7.5e-24 113.6 74 74.3
Prupe.5G211800 Prunus persica HOM05D003339 ORTHO05D003847 7.5e-24 113.6 71 76.1
Duzib205G1372 Durio zibethinus HOM05D003339 ORTHO05D003847 9.7e-24 113.2 71 74.6
Eucgr.B00658 Eucalyptus grandis HOM05D003339 ORTHO05D003847 9.7e-24 113.2 71 74.6
MD06G1207400 Malus domestica HOM05D003339 ORTHO05D003847 9.7e-24 113.2 71 76.1
MD14G1217900 Malus domestica HOM05D003339 ORTHO05D003847 9.7e-24 113.2 71 76.1
Thecc.03G112700 Theobroma cacao HOM05D003339 ORTHO05D003847 9.7e-24 113.2 71 74.6
TPR.G2054 Trifolium pratense HOM05D003339 ORTHO05D003847 9.7e-24 113.2 70 78.6
CANSAT80G1679 Cannabis sativa HOM05D003339 ORTHO05D003847 1.3e-23 112.8 72 77.8
FvH4_5g13060 Fragaria vesca HOM05D003339 ORTHO05D003847 1.3e-23 112.8 70 77.1
FAN08G3318 Fragaria x ananassa HOM05D003339 ORTHO05D003847 1.3e-23 112.8 70 77.1
FAN18G1156 Fragaria x ananassa HOM05D003339 ORTHO05D003847 1.3e-23 112.8 70 77.1
Nitab4.5_0000646g0190 Nicotiana tabacum HOM05D003339 ORTHO05D003847 1.3e-23 112.8 70 80.0
Nitab4.5_0002805g0160 Nicotiana tabacum HOM05D003339 ORTHO05D003847 1.3e-23 112.8 70 80.0
Aa31LG3G18380 Aethionema arabicum HOM05D003339 ORTHO05D003847 1.7e-23 112.5 72 72.2
BraA03t09713Z Brassica rapa HOM05D003339 ORTHO05D003847 1.7e-23 112.5 70 74.3
PSO063G4536 Papaver somniferum HOM05D003339 ORTHO05D003847 1.7e-23 112.5 70 71.4
PSO782G0690 Papaver somniferum HOM05D003339 ORTHO05D003847 1.7e-23 112.5 70 71.4
SalBow5G5032 Salvia bowleyana HOM05D003339 ORTHO05D003847 1.7e-23 112.5 71 74.6
SGA_v2.0_scaffold25G10976 Striga asiatica HOM05D003339 ORTHO05D003847 1.7e-23 112.5 71 71.8
TWI60G0446 Tripterygium wilfordii HOM05D003339 ORTHO05D003847 1.7e-23 112.5 72 73.6
arahy.Tifrunner.gnm1.ann1.TX18T3 Arachis hypogaea HOM05D003339 ORTHO05D003847 2.2e-23 112.1 70 77.1
QL10p021698 Quercus lobata HOM05D003339 ORTHO05D003847 2.2e-23 112.1 73 69.9
Lj4g0005951 Lotus japonicus HOM05D003339 ORTHO05D003847 2.8e-23 111.7 70 78.6
ECA246G0336 Erigeron canadensis HOM05D003339 ORTHO05D003847 3.7e-23 111.3 70 75.7
HanXRQChr08g0234391 Helianthus annuus HOM05D003339 ORTHO05D003847 3.7e-23 111.3 70 77.1
Potri.015G055200 Populus trichocarpa HOM05D003339 ORTHO05D003847 3.7e-23 111.3 77 71.4
SGA_v2.0_scaffold19G08801 Striga asiatica HOM05D003339 ORTHO05D003847 3.7e-23 111.3 71 71.8
A03p03650 Brassica napus HOM05D003339 ORTHO05D003847 4.8e-23 110.9 70 72.9
Lsat_1_v5_gn_5_24460 Lactuca sativa HOM05D003339 ORTHO05D003847 4.8e-23 110.9 70 75.7
Potri.012G057300 Populus trichocarpa HOM05D003339 ORTHO05D003847 4.8e-23 110.9 78 71.8
TWI15G0752 Tripterygium wilfordii HOM05D003339 ORTHO05D003847 4.8e-23 110.9 72 70.8
GSVIVG01008184001 Vitis vinifera HOM05D003339 ORTHO05D003847 4.8e-23 110.9 70 75.7
Sopen03g033660 Solanum pennellii HOM05D003339 ORTHO05D003847 6.3e-23 110.5 70 78.6
MSTRG.4521 Avicennia marina HOM05D003339 ORTHO05D003847 8.3e-23 110.2 70 75.7
Ca_21743_v3 Cicer arietinum L. HOM05D003339 ORTHO05D003847 8.3e-23 110.2 70 75.7
Glyma.17G083100 Glycine max HOM05D003339 ORTHO05D003847 8.3e-23 110.2 70 80.0
Solyc03g114590.3 Solanum lycopersicum HOM05D003339 ORTHO05D003847 8.3e-23 110.2 70 78.6
Oeu001005.1 Olea europaea HOM05D003339 ORTHO05D003847 1.1e-22 109.8 70 77.1
Oeu008244.1 Olea europaea HOM05D003339 ORTHO05D003847 1.1e-22 109.8 71 74.6
TAR374G1210 Trochodendron aralioides HOM05D003339 ORTHO05D003847 1.1e-22 109.8 70 74.3
unitig_0.g1352 Utricularia gibba HOM05D003339 ORTHO05D003847 1.4e-22 109.4 70 71.4
Glyma.05G016900 Glycine max HOM05D003339 ORTHO05D003847 1.8e-22 109.0 70 78.6
HanXRQChr02g0043221 Helianthus annuus HOM05D003339 ORTHO05D003847 1.8e-22 109.0 70 78.6
PGSC0003DMG400024513 Solanum tuberosum HOM05D003339 ORTHO05D003847 1.8e-22 109.0 70 77.1
BcaNung05090 Brassica carinata HOM05D003339 ORTHO05D003847 2.4e-22 108.6 70 68.6
CSS0011891 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 2.4e-22 108.6 71 71.8
CSS0042727 Camellia sinensis var. sinensis HOM05D003339 ORTHO05D003847 2.4e-22 108.6 71 71.8
DCAR_015111 Daucus carota HOM05D003339 ORTHO05D003847 2.4e-22 108.6 70 68.6
Gohir.D12G187800 Gossypium hirsutum HOM05D003339 ORTHO05D003847 2.4e-22 108.6 71 71.8
Gorai.008G201200 Gossypium raimondii HOM05D003339 ORTHO05D003847 2.4e-22 108.6 71 71.8
MBI15_g03195_MAGBIO Magnolia biondii HOM05D003339 ORTHO05D003847 2.4e-22 108.6 68 77.9
Solyc06g069330.3 Solanum lycopersicum HOM05D003339 ORTHO05D003847 2.4e-22 108.6 70 74.3
Sopen06g026590 Solanum pennellii HOM05D003339 ORTHO05D003847 2.4e-22 108.6 70 74.3
TAR622G0159 Trochodendron aralioides HOM05D003339 ORTHO05D003847 2.4e-22 108.6 70 75.7
Sed0026229 Sechium edule HOM05D003339 ORTHO05D003847 3.1e-22 108.2 72 73.6
PGSC0003DMG400004058 Solanum tuberosum HOM05D003339 ORTHO05D003847 3.1e-22 108.2 70 72.9
BcaB08g37278 Brassica carinata HOM05D003339 ORTHO05D003847 4.1e-22 107.8 70 71.4
FAN13G0388 Fragaria x ananassa HOM05D003339 ORTHO05D003847 4.1e-22 107.8 70 72.9
Peaxi162Scf00017g03130 Petunia axillaris HOM05D003339 ORTHO05D003847 4.1e-22 107.8 70 77.1
Aqoxy3G03800 Aquilegia oxysepala HOM05D003339 ORTHO05D003847 5.3e-22 107.5 70 68.6
Cc04_g07940 Coffea canephora HOM05D003339 ORTHO05D003847 5.3e-22 107.5 70 70.0
Lalb_Chr23g0274071 Lupinus albus HOM05D003339 ORTHO05D003847 5.3e-22 107.5 71 73.2
C02p03430 Brassica napus HOM05D003339 ORTHO05D003847 7.0e-22 107.1 70 74.3
BolC2t06304H Brassica oleracea HOM05D003339 ORTHO05D003847 7.0e-22 107.1 70 74.3
BraA02t04943Z Brassica rapa HOM05D003339 ORTHO05D003847 7.0e-22 107.1 70 74.3
MELO3C017263.2 Cucumis melo HOM05D003339 ORTHO05D003847 7.0e-22 107.1 72 72.2
Nn3g17607 Nelumbo nucifera HOM05D003339 ORTHO05D003847 7.0e-22 107.1 72 70.8
ClCG06G015300 Citrullus lanatus HOM05D003339 ORTHO05D003847 9.1e-22 106.7 72 72.2
Sed0019840 Sechium edule HOM05D003339 ORTHO05D003847 9.1e-22 106.7 73 71.2
ATR0691G304 Amborella trichopoda HOM05D003339 ORTHO05D003847 1.2e-21 106.3 70 71.4
arahy.Tifrunner.gnm1.ann1.82AL0Q Arachis hypogaea HOM05D003339 ORTHO05D003847 1.2e-21 106.3 70 75.7
arahy.Tifrunner.gnm1.ann1.G7HP2Z Arachis hypogaea HOM05D003339 ORTHO05D003847 1.2e-21 106.3 70 75.7
COL.COLO4_07848 Corchorus olitorius HOM05D003339 ORTHO05D003847 1.6e-21 105.9 57 82.5
CsaV3_1G003180 Cucumis sativus L. HOM05D003339 ORTHO05D003847 1.6e-21 105.9 72 70.8
HPP92_023904 Vanilla planifolia HOM05D003339 ORTHO05D003847 1.6e-21 105.9 71 71.8
Rhsim08G0140900 Rhododendron simsii HOM05D003339 ORTHO05D003847 2.0e-21 105.5 70 72.9
Gohir.A12G184800 Gossypium hirsutum HOM05D003339 ORTHO05D003847 2.7e-21 105.1 71 69.0
Lsat_1_v5_gn_1_15541 Lactuca sativa HOM05D003339 ORTHO05D003847 3.5e-21 104.8 70 74.3
Sed0006970 Sechium edule HOM05D003339 ORTHO05D003847 3.5e-21 104.8 72 70.8
CAN.G982.26 Capsicum annuum HOM05D003339 ORTHO05D003847 4.5e-21 104.4 70 74.3
Hma1.2p1_0595F.1_g186200 Hydrangea macrophylla HOM05D003339 ORTHO05D003847 4.5e-21 104.4 72 69.4
HPP92_005302 Vanilla planifolia HOM05D003339 ORTHO05D003847 4.5e-21 104.4 71 66.2
Aa31LG11G2500 Aethionema arabicum HOM05D003339 ORTHO05D003847 5.9e-21 104.0 72 65.3
Manes.01G024000 Manihot esculenta HOM05D003339 ORTHO05D003847 7.7e-21 103.6 74 68.9
Aqoxy3G00608 Aquilegia oxysepala HOM05D003339 ORTHO05D003847 1.0e-20 103.2 73 65.8
CDE02G3580 Ceratophyllum demersum HOM05D003339 ORTHO05D003847 1.3e-20 102.8 70 71.4
Rhsim12G0146600 Rhododendron simsii HOM05D003339 ORTHO05D003847 1.7e-20 102.4 73 67.1
Actinidia18962 Actinidia chinensis HOM05D003339 ORTHO05D003847 2.9e-20 101.7 71 69.0
Nitab4.5_0000208g0040 Nicotiana tabacum HOM05D003339 ORTHO05D003847 3.8e-20 101.3 70 68.6
Nitab4.5_0007617g0020 Nicotiana tabacum HOM05D003339 ORTHO05D003847 3.8e-20 101.3 70 68.6
ECA247G3233 Erigeron canadensis HOM05D003339 ORTHO05D003847 5.0e-20 100.9 70 70.0
CDE02G0750 Ceratophyllum demersum HOM05D003339 ORTHO05D003847 4.2e-19 97.8 70 68.6
MSTRG.9563 Avicennia marina HOM05D003339 ORTHO05D003847 5.5e-19 97.4 70 68.6
PSO478G5178 Papaver somniferum HOM05D003339 ORTHO05D003847 5.5e-19 97.4 76 64.5
vmacro16467 Vaccinium macrocarpon HOM05D003339 ORTHO05D003847 9.4e-19 96.7 70 65.7
HPP92_015515 Vanilla planifolia HOM05D003339 ORTHO05D003847 1.6e-18 95.9 62 71.0
Lalb_Chr13g0302621 Lupinus albus HOM05D003339 ORTHO05D003847 2.7e-18 95.1 71 63.4
PSO017G1130 Papaver somniferum HOM05D003339 ORTHO05D003847 2.7e-18 95.1 76 63.2
SEGI_21241 Sequoiadendron giganteum HOM05D003339 ORTHO05D003847 8.0e-18 93.6 70 68.6
CAN.G648.13 Capsicum annuum HOM05D003339 ORTHO05D003847 1.5e-16 89.4 70 61.4
DCAR_011591 Daucus carota HOM05D003339 ORTHO05D003847 1.5e-16 89.4 52 69.2
Os09g0372800 Oryza sativa ssp. japonica HOM05D003339 ORTHO05D003847 4.4e-16 87.8 57 68.4
Peaxi162Scf00119g00016 Petunia axillaris HOM05D003339 ORTHO05D003847 1.3e-15 86.3 70 62.9
Ah.14g084340 Amaranthus hybridus HOM05D000119 ORTHO05D000054 2.2e-15 85.5 40 97.5
PGSC0003DMG400000652 Solanum tuberosum HOM05D003339 ORTHO05D003847 2.8e-15 85.1 70 62.9
Lsat_1_v5_gn_6_23060 Lactuca sativa HOM05D003339 ORTHO05D003847 8.3e-15 83.6 65 61.5
SMO259G0005 Selaginella moellendorffii HOM05D003339 ORTHO05D003847 8.3e-15 83.6 51 70.6
AagrBONN_evm.TU.Sc2ySwM_228.4180 Anthoceros agrestis HOM05D003339 ORTHO05D003847 1.1e-14 83.2 70 60.0
Zm00001eb311400 Zea mays HOM05D003339 ORTHO05D003847 1.1e-14 83.2 70 57.1
Solyc12g038920.2 Solanum lycopersicum HOM05D003339 ORTHO05D003847 1.4e-14 82.8 70 61.4
Sopen12g019100 Solanum pennellii HOM05D003339 ORTHO05D003847 1.4e-14 82.8 70 61.4
Lalb_Chr12g0197431 Lupinus albus HOM05D003339 ORTHO05D003847 3.1e-14 81.6 70 55.7
Mapoly0217s0005 Marchantia polymorpha HOM05D003339 ORTHO05D003847 2.7e-13 78.6 47 70.2
CDE01G0151 Ceratophyllum demersum HOM05D003339 ORTHO05D003847 7.7e-13 77.0 60 61.7
Os09g0237600 Oryza sativa ssp. japonica HOM05D003339 ORTHO05D003847 2.3e-12 75.5 60 60.0
Pp3c15_12440 Physcomitrium patens HOM05D003339 ORTHO05D003847 3.8e-12 74.7 49 67.3
Zm00001eb095510 Zea mays HOM05D003339 ORTHO05D003847 5.5e-11 70.9 60 58.3
AUR62028451 Chenopodium quinoa HOM05D003339 ORTHO05D003847 9.5e-11 70.1 38 86.8
Sabra15G0080000 Salix brachista HOM05D003339 ORTHO05D003847 5.7e-08 60.8 52 59.6


User provided reference genes

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