Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046500 Amaranthus hybridus HOM05D000084 ORTHO05D000363 6.1e-61 237.3 117 100.0
EL10Ac5g11338 Beta vulgaris HOM05D000084 ORTHO05D000363 1.6e-53 212.6 117 88.0
AUR62034793 Chenopodium quinoa HOM05D000084 ORTHO05D000363 3.0e-52 208.4 117 88.0
AUR62029536 Chenopodium quinoa HOM05D000084 ORTHO05D000363 4.0e-52 208.0 117 88.0
Hund10079 Selenicereus undatus HOM05D000084 ORTHO05D000363 1.3e-42 176.4 117 75.2
Hund02479 Selenicereus undatus HOM05D000084 ORTHO05D000363 3.3e-38 161.8 106 73.6
Dinv23193 Davidia involucrata HOM05D000084 ORTHO05D000363 1.2e-24 116.7 117 53.0
Duzib205G0341 Durio zibethinus HOM05D000084 ORTHO05D000363 1.6e-24 116.3 109 51.4
QL10p001135 Quercus lobata HOM05D000084 ORTHO05D000363 1.6e-24 116.3 108 61.1
Nitab4.5_0013079g0020 Nicotiana tabacum HOM05D000084 ORTHO05D000363 2.0e-24 115.9 117 51.3
Lj5A91T50 Lonicera japonica HOM05D000084 ORTHO05D000363 2.7e-24 115.5 121 54.5
CiPaw.11G002700 Carya illinoinensis HOM05D000084 ORTHO05D000363 4.6e-24 114.8 114 57.0
Gohir.A07G048000 Gossypium hirsutum HOM05D000084 ORTHO05D000363 6.0e-24 114.4 110 52.7
Nitab4.5_0001451g0070 Nicotiana tabacum HOM05D000084 ORTHO05D000363 6.0e-24 114.4 117 51.3
Sc04g0000350 Simmondsia chinensis HOM05D000084 ORTHO05D000363 6.0e-24 114.4 106 58.5
CSS0020915 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000363 7.8e-24 114.0 117 53.0
CSS0036203 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000363 7.8e-24 114.0 117 53.0
COL.COLO4_16677 Corchorus olitorius HOM05D000084 ORTHO05D000363 7.8e-24 114.0 110 50.0
Haze_07126 Corylus avellana HOM05D000084 ORTHO05D000363 7.8e-24 114.0 105 59.0
Gohir.D07G052300 Gossypium hirsutum HOM05D000084 ORTHO05D000363 7.8e-24 114.0 110 52.7
Gorai.001G055300 Gossypium raimondii HOM05D000084 ORTHO05D000363 1.3e-23 113.2 110 52.7
Sopen03g028440 Solanum pennellii HOM05D000084 ORTHO05D000363 5.0e-23 111.3 117 52.1
Glyma.06G166200 Glycine max HOM05D000084 ORTHO05D000363 8.6e-23 110.5 105 55.2
Glyma.04G199300 Glycine max HOM05D000084 ORTHO05D000363 1.9e-22 109.4 105 55.2
Cc04_g09550 Coffea canephora HOM05D000084 ORTHO05D000363 2.5e-22 109.0 117 52.1
Manes.06G124000 Manihot esculenta HOM05D000084 ORTHO05D000363 2.5e-22 109.0 110 54.5
Solyc03g097690.3 Solanum lycopersicum HOM05D000084 ORTHO05D000363 2.5e-22 109.0 117 51.3
TPR.G21574 Trifolium pratense HOM05D000084 ORTHO05D000363 2.5e-22 109.0 109 55.0
Actinidia36828 Actinidia chinensis HOM05D000084 ORTHO05D000363 3.3e-22 108.6 119 52.9
Phvul.009G163500 Phaseolus vulgaris HOM05D000084 ORTHO05D000363 3.3e-22 108.6 106 55.7
Cfa018733 Carpinus fangiana HOM05D000084 ORTHO05D000363 4.3e-22 108.2 104 57.7
PGSC0003DMG400004340 Solanum tuberosum HOM05D000084 ORTHO05D000363 4.3e-22 108.2 117 51.3
Actinidia08893 Actinidia chinensis HOM05D000084 ORTHO05D000363 5.6e-22 107.8 118 53.4
Medtr3g098760 Medicago truncatula HOM05D000084 ORTHO05D000363 5.6e-22 107.8 108 56.5
Thecc.03G136600 Theobroma cacao HOM05D000084 ORTHO05D000363 5.6e-22 107.8 110 50.0
CAN.G758.17 Capsicum annuum HOM05D000084 ORTHO05D000363 7.3e-22 107.5 117 50.4
Lj1g0015013 Lotus japonicus HOM05D000084 ORTHO05D000363 1.2e-21 106.7 104 53.8
Psat5g053640 Pisum sativum HOM05D000084 ORTHO05D000363 1.6e-21 106.3 107 54.2
TAR622G0037 Trochodendron aralioides HOM05D000084 ORTHO05D000363 1.6e-21 106.3 123 50.4
Duzib068G1344 Durio zibethinus HOM05D000084 ORTHO05D000363 3.6e-21 105.1 108 49.1
Lalb_Chr08g0237421 Lupinus albus HOM05D000084 ORTHO05D000363 4.7e-21 104.8 105 54.3
Ca_16074_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000363 8.0e-21 104.0 107 53.3
Atru.chr6.1888 Acer truncatum HOM05D000084 ORTHO05D000363 4.0e-20 101.7 115 51.3
MD14G1150700 Malus domestica HOM05D000084 ORTHO05D000363 4.0e-20 101.7 106 53.8
Peaxi162Scf01122g00017 Petunia axillaris HOM05D000084 ORTHO05D000363 4.0e-20 101.7 109 51.4
MD06G1134300 Malus domestica HOM05D000084 ORTHO05D000363 6.8e-20 100.9 106 53.8
TWI23G1048 Tripterygium wilfordii HOM05D000084 ORTHO05D000363 8.9e-20 100.5 108 50.0
VMungo1309G3002 Vigna mungo HOM05D000084 ORTHO05D000363 8.9e-20 100.5 106 52.8
CANSAT80G2241 Cannabis sativa HOM05D000084 ORTHO05D000363 1.2e-19 100.1 106 50.0
FvH4_5g09040 Fragaria vesca HOM05D000084 ORTHO05D000363 1.5e-19 99.8 103 53.4
FAN18G4549 Fragaria x ananassa HOM05D000084 ORTHO05D000363 1.5e-19 99.8 103 53.4
Prupe.5G145300 Prunus persica HOM05D000084 ORTHO05D000363 1.5e-19 99.8 107 52.3
ClCG03G003980 Citrullus lanatus HOM05D000084 ORTHO05D000363 2.0e-19 99.4 106 54.7
MELO3C002382.2 Cucumis melo HOM05D000084 ORTHO05D000363 2.0e-19 99.4 106 53.8
FAN04G2479 Fragaria x ananassa HOM05D000084 ORTHO05D000363 2.6e-19 99.0 118 49.2
FAN13G3093 Fragaria x ananassa HOM05D000084 ORTHO05D000363 3.4e-19 98.6 103 52.4
Sabra15G0122600 Salix brachista HOM05D000084 ORTHO05D000363 3.4e-19 98.6 109 48.6
FAN08G2115 Fragaria x ananassa HOM05D000084 ORTHO05D000363 4.4e-19 98.2 103 52.4
CsaV3_1G009860 Cucumis sativus L. HOM05D000084 ORTHO05D000363 7.5e-19 97.4 106 54.7
Nn3g16341 Nelumbo nucifera HOM05D000084 ORTHO05D000363 7.5e-19 97.4 121 47.9
RcHm_v2.0_Chr7g0189181 Rosa chinensis HOM05D000084 ORTHO05D000363 7.5e-19 97.4 103 52.4
CSS0048731 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000363 1.3e-18 96.7 117 47.0
PSO478G0779 Papaver somniferum HOM05D000084 ORTHO05D000363 2.2e-18 95.9 116 43.1
Potri.012G103900 Populus trichocarpa HOM05D000084 ORTHO05D000363 2.2e-18 95.9 109 48.6
Potri.015G103300 Populus trichocarpa HOM05D000084 ORTHO05D000363 2.2e-18 95.9 109 48.6
PSO017G4038 Papaver somniferum HOM05D000084 ORTHO05D000363 3.7e-18 95.1 116 43.1
arahy.Tifrunner.gnm1.ann1.14WQKG Arachis hypogaea HOM05D000084 ORTHO05D000363 6.4e-18 94.4 106 51.9
arahy.Tifrunner.gnm1.ann1.NGMX9L Arachis hypogaea HOM05D000084 ORTHO05D000363 6.4e-18 94.4 106 51.9
Glyma.08G009400 Glycine max HOM05D000084 ORTHO05D000363 1.1e-17 93.6 106 49.1
Lalb_Chr23g0272961 Lupinus albus HOM05D000084 ORTHO05D000363 1.1e-17 93.6 100 53.0
Lj4g0024043 Lotus japonicus HOM05D000084 ORTHO05D000363 1.4e-17 93.2 108 50.9
DCAR_016361 Daucus carota HOM05D000084 ORTHO05D000363 2.4e-17 92.4 109 47.7
Glyma.05G202000 Glycine max HOM05D000084 ORTHO05D000363 4.1e-17 91.7 106 49.1
Medtr8g099770 Medicago truncatula HOM05D000084 ORTHO05D000363 7.0e-17 90.9 107 46.7
Sabra12G0076500 Salix brachista HOM05D000084 ORTHO05D000363 1.2e-16 90.1 106 46.2
Sed0024028 Sechium edule HOM05D000084 ORTHO05D000363 1.2e-16 90.1 105 53.3
Lj9C483T8 Lonicera japonica HOM05D000084 ORTHO05D000363 2.1e-16 89.4 117 41.0
MBI07_g24758_MAGBIO Magnolia biondii HOM05D000084 ORTHO05D000363 2.1e-16 89.4 107 48.6
arahy.Tifrunner.gnm1.ann1.10USNJ Arachis hypogaea HOM05D000084 ORTHO05D000363 3.5e-16 88.6 104 45.2
DCAR_026254 Daucus carota HOM05D000084 ORTHO05D011681 3.5e-16 88.6 103 51.5
Phvul.002G283400 Phaseolus vulgaris HOM05D000084 ORTHO05D000363 3.5e-16 88.6 103 51.5
GSVIVG01008613001 Vitis vinifera HOM05D000084 ORTHO05D000363 3.5e-16 88.6 116 46.6
arahy.Tifrunner.gnm1.ann1.39X4A2 Arachis hypogaea HOM05D000084 ORTHO05D000363 6.0e-16 87.8 106 45.3
Oeu025408.1 Olea europaea HOM05D000084 ORTHO05D000363 7.8e-16 87.4 121 43.8
Ciclev10031084m.g Citrus clementina HOM05D000084 ORTHO05D000363 1.7e-15 86.3 109 45.9
VMungo0251G2611 Vigna mungo HOM05D000084 ORTHO05D000363 2.3e-15 85.9 103 48.5
vmacro16742 Vaccinium macrocarpon HOM05D000084 ORTHO05D000363 6.6e-15 84.3 112 47.3
TPR.G12791 Trifolium pratense HOM05D000084 ORTHO05D000363 8.6e-15 84.0 106 47.2
HanXRQChr09g0273671 Helianthus annuus HOM05D000084 ORTHO05D000363 5.6e-14 81.3 112 44.6
Rhsim12G0178400 Rhododendron simsii HOM05D000084 ORTHO05D000363 9.5e-14 80.5 117 42.7
Carub.0008s1085 Capsella rubella HOM05D000084 ORTHO05D000363 2.1e-13 79.3 109 42.2
THA.LOC104825032 Tarenaya hassleriana HOM05D000084 ORTHO05D000363 2.1e-13 79.3 112 46.4
Cpa.g.sc4.126 Carica papaya HOM05D000084 ORTHO05D000363 4.7e-13 78.2 106 45.3
Gorai.003G118400 Gossypium raimondii HOM05D000084 ORTHO05D000363 4.7e-13 78.2 79 48.1
Lsat_1_v5_gn_4_83401 Lactuca sativa HOM05D000084 ORTHO05D000363 1.1e-12 77.0 109 48.6
HanXRQChr16g0498771 Helianthus annuus HOM05D000084 ORTHO05D000363 1.4e-12 76.6 113 46.9
CDE05G2594 Ceratophyllum demersum HOM05D000084 ORTHO05D000363 2.3e-12 75.9 112 42.0
DCAR_007512 Daucus carota HOM05D000084 ORTHO05D011681 2.3e-12 75.9 103 45.6
Gohir.D03G112100 Gossypium hirsutum HOM05D000084 ORTHO05D000363 2.3e-12 75.9 71 56.3
AL8G25030 Arabidopsis lyrata HOM05D000084 ORTHO05D000363 3.1e-12 75.5 109 44.0
Thhalv10013077m.g Eutrema salsugineum HOM05D000084 ORTHO05D000363 3.1e-12 75.5 110 43.6
Gohir.A03G054700 Gossypium hirsutum HOM05D000084 ORTHO05D000363 3.1e-12 75.5 71 56.3
Gohir.A09G247600 Gossypium hirsutum HOM05D000084 ORTHO05D000363 3.1e-12 75.5 102 44.1
Oeu058108.1 Olea europaea HOM05D000084 ORTHO05D000363 3.1e-12 75.5 118 39.0
Gohir.D09G248300 Gossypium hirsutum HOM05D000084 ORTHO05D000363 4.0e-12 75.1 102 44.1
SalBow1G8351 Salvia bowleyana HOM05D000084 ORTHO05D000363 5.2e-12 74.7 95 45.3
Migut.D01300 Erythranthe guttata HOM05D000084 ORTHO05D000363 6.8e-12 74.3 127 39.4
AT5G50860 Arabidopsis thaliana HOM05D000084 ORTHO05D000363 8.9e-12 73.9 109 43.1
MSTRG.22886 Avicennia marina HOM05D000084 ORTHO05D000363 1.5e-11 73.2 95 45.3
Aa31LG3G7340 Aethionema arabicum HOM05D000084 ORTHO05D000363 2.0e-11 72.8 109 43.1
Gorai.006G272600 Gossypium raimondii HOM05D000084 ORTHO05D000363 2.0e-11 72.8 102 43.1
HanXRQChr05g0157721 Helianthus annuus HOM05D000084 ORTHO05D000363 2.0e-11 72.8 117 41.9
ATR0582G069 Amborella trichopoda HOM05D000084 ORTHO05D000363 2.6e-11 72.4 131 41.2
BraSC35t45990Z Brassica rapa HOM05D000084 ORTHO05D000363 2.6e-11 72.4 109 41.3
BcaC04g20789 Brassica carinata HOM05D000084 ORTHO05D000363 1.3e-10 70.1 109 42.2
C09p39190 Brassica napus HOM05D000084 ORTHO05D000363 1.3e-10 70.1 109 42.2
BolC9t56798H Brassica oleracea HOM05D000084 ORTHO05D000363 1.3e-10 70.1 109 42.2
Sp6g13000 Schrenkiella parvula HOM05D000084 ORTHO05D000363 1.3e-10 70.1 111 43.2
BcaB08g35456 Brassica carinata HOM05D000084 ORTHO05D000363 1.7e-10 69.7 110 42.7
A10p08080 Brassica napus HOM05D000084 ORTHO05D000363 1.7e-10 69.7 110 43.6
Lsat_1_v5_gn_5_10481 Lactuca sativa HOM05D000084 ORTHO05D000363 2.2e-10 69.3 117 44.4
BraA03t10941Z Brassica rapa HOM05D000084 ORTHO05D000363 2.9e-10 68.9 110 40.0
A03p16540 Brassica napus HOM05D000084 ORTHO05D000363 4.9e-10 68.2 110 40.0
BcaC01g06059 Brassica carinata HOM05D000084 ORTHO05D000363 1.1e-09 67.0 111 39.6
C03p19470 Brassica napus HOM05D000084 ORTHO05D000363 1.1e-09 67.0 111 39.6
BolC3t14328H Brassica oleracea HOM05D000084 ORTHO05D000363 1.1e-09 67.0 111 39.6
Migut.O00354 Erythranthe guttata HOM05D000084 ORTHO05D000363 1.1e-09 67.0 100 42.0
MSTRG.9344 Avicennia marina HOM05D000084 ORTHO05D000363 1.9e-09 66.2 102 40.2
CARHR257390 Cardamine hirsuta HOM05D000084 ORTHO05D000363 4.1e-09 65.1 109 41.3
Sed0015025 Sechium edule HOM05D000084 ORTHO05D000363 9.2e-09 63.9 97 40.2
CDE05G1390 Ceratophyllum demersum HOM05D000084 ORTHO05D000363 2.1e-08 62.8 77 45.5
ECA232G2822 Erigeron canadensis HOM05D000084 ORTHO05D000363 7.8e-08 60.8 89 43.8
Zm00001eb394760 Zea mays HOM05D000084 ORTHO05D000363 1.7e-07 59.7 89 43.8
ATR0706G190 Amborella trichopoda HOM05D000084 ORTHO05D000363 3.0e-07 58.9 82 39.0
SalBow5G3042 Salvia bowleyana HOM05D000084 ORTHO05D000363 3.9e-07 58.5 104 37.5
unitig_8.g3786 Utricularia gibba HOM05D000084 ORTHO05D000363 5.1e-07 58.2 84 40.5
SEGI_27084 Sequoiadendron giganteum HOM05D000084 ORTHO05D000363 6.6e-07 57.8 46 60.9
SEGI_39717 Sequoiadendron giganteum HOM05D000084 ORTHO05D000363 6.6e-07 57.8 46 60.9
BNapus_Darmor_BZH_scaffold_114p00300 Brassica napus HOM05D000084 ORTHO05D000363 8.6e-07 57.4 90 40.0
BraSC132t45521Z Brassica rapa HOM05D000084 ORTHO05D000363 8.6e-07 57.4 90 40.0
BcaB04g21373 Brassica carinata HOM05D000084 ORTHO05D000363 1.5e-06 56.6 90 38.9
CiPaw.02G086700 Carya illinoinensis HOM05D000084 ORTHO05D000363 1.5e-06 56.6 77 45.5
vmacro08203 Vaccinium macrocarpon HOM05D000084 ORTHO05D000363 1.5e-06 56.6 85 37.6
AL3G15440 Arabidopsis lyrata HOM05D000084 ORTHO05D000363 1.9e-06 56.2 90 42.2
BolC1t05714H Brassica oleracea HOM05D000084 ORTHO05D000363 1.9e-06 56.2 90 38.9
Carub.0003s0430 Capsella rubella HOM05D000084 ORTHO05D000363 1.9e-06 56.2 90 41.1
CiPaw.01G153000 Carya illinoinensis HOM05D000084 ORTHO05D000363 2.5e-06 55.8 85 38.8
THA.LOC104818658 Tarenaya hassleriana HOM05D000084 ORTHO05D000363 2.5e-06 55.8 73 46.6
AT3G05050 Arabidopsis thaliana HOM05D000084 ORTHO05D000363 3.3e-06 55.5 90 41.1
Peaxi162Scf00225g00047 Petunia axillaris HOM05D000084 ORTHO05D009270 3.3e-06 55.5 52 55.8
BcaC05g29990 Brassica carinata HOM05D000084 ORTHO05D000363 4.3e-06 55.1 90 41.1
C05p62170 Brassica napus HOM05D000084 ORTHO05D000363 4.3e-06 55.1 90 41.1
BolC5t34875H Brassica oleracea HOM05D000084 ORTHO05D000363 4.3e-06 55.1 90 41.1
CARHR079380 Cardamine hirsuta HOM05D000084 ORTHO05D000363 4.3e-06 55.1 90 41.1
Ciclev10000698m.g Citrus clementina HOM05D000084 ORTHO05D000363 4.3e-06 55.1 53 52.8
ECA246G0054 Erigeron canadensis HOM05D000084 ORTHO05D000363 4.3e-06 55.1 80 47.5
Glyma.10G158800 Glycine max HOM05D000084 ORTHO05D000363 5.6e-06 54.7 77 39.0
Aa31LG5G15390 Aethionema arabicum HOM05D000084 ORTHO05D000363 7.3e-06 54.3 72 43.1
Ca_00574_v3 Cicer arietinum L. HOM05D000084 ORTHO05D000363 7.3e-06 54.3 79 40.5
MD12G1233100 Malus domestica HOM05D000084 ORTHO05D000363 7.3e-06 54.3 50 54.0
Prupe.6G336200 Prunus persica HOM05D000084 ORTHO05D000363 7.3e-06 54.3 115 37.4
A05p42510 Brassica napus HOM05D000084 ORTHO05D000363 9.5e-06 53.9 90 41.1
BraA05t23001Z Brassica rapa HOM05D000084 ORTHO05D000363 9.5e-06 53.9 90 41.1
CSS0028581 Camellia sinensis var. sinensis HOM05D000084 ORTHO05D000363 9.5e-06 53.9 50 52.0
Haze_01061 Corylus avellana HOM05D000084 ORTHO05D000363 9.5e-06 53.9 57 49.1
Oeu062886.1 Olea europaea HOM05D000084 ORTHO05D000363 9.5e-06 53.9 50 50.0
Sp3g03880 Schrenkiella parvula HOM05D000084 ORTHO05D000363 9.5e-06 53.9 90 40.0
TWI73G0042 Tripterygium wilfordii HOM05D000084 ORTHO05D000363 9.5e-06 53.9 72 41.7


User provided reference genes

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