Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046440 Amaranthus hybridus HOM05D006294 ORTHO05D007668 1.9e-262 908.7 462 100.0
RcHm_v2.0_Chr6g0279111 Rosa chinensis HOM05D006294 ORTHO05D007668 1.0e-135 487.6 422 56.2
FvH4_2g15760 Fragaria vesca HOM05D006294 ORTHO05D007668 2.8e-133 479.6 422 55.7
FAN24G2955 Fragaria x ananassa HOM05D006294 ORTHO05D007668 2.8e-133 479.6 422 55.5
vmacro02296 Vaccinium macrocarpon HOM05D006294 ORTHO05D007668 4.7e-133 478.8 431 52.4
Dinv41907 Davidia involucrata HOM05D006294 ORTHO05D007668 8.1e-133 478.0 434 56.2
MD10G1129400 Malus domestica HOM05D006294 ORTHO05D007668 2.4e-132 476.5 434 54.6
Prupe.8G170200 Prunus persica HOM05D006294 ORTHO05D007668 5.8e-131 471.9 422 53.8
FAN27G0563 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.3e-130 470.7 422 54.5
SalBow1G5734 Salvia bowleyana HOM05D006294 ORTHO05D007668 2.9e-130 469.5 432 53.2
CSS0011609 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 3.8e-130 469.2 419 54.9
CSS0032021 Camellia sinensis var. sinensis HOM05D006294 ORTHO05D007668 3.8e-130 469.2 419 54.9
Rhsim11G0194300 Rhododendron simsii HOM05D006294 ORTHO05D007668 1.4e-129 467.2 428 52.6
FAN15G3675 Fragaria x ananassa HOM05D006294 ORTHO05D007668 1.9e-129 466.8 422 54.7
Actinidia18031 Actinidia chinensis HOM05D006294 ORTHO05D007668 4.2e-129 465.7 433 52.4
Lj5A175T99 Lonicera japonica HOM05D006294 ORTHO05D007668 1.6e-128 463.8 435 54.0
Manes.04G070000 Manihot esculenta HOM05D006294 ORTHO05D007668 9.6e-126 454.5 419 53.5
Thhalv10022675m.g Eutrema salsugineum HOM05D006294 ORTHO05D007668 3.6e-125 452.6 418 54.3
Hma1.2p1_0032F.1_g019100 Hydrangea macrophylla HOM05D006294 ORTHO05D007668 4.0e-124 449.1 426 54.0
Ciclev10028424m.g Citrus clementina HOM05D006294 ORTHO05D007668 6.9e-124 448.4 420 54.8
AT2G17033 Arabidopsis thaliana HOM05D006294 ORTHO05D007668 2.0e-123 446.8 418 53.8
Carub.0003s3096 Capsella rubella HOM05D006294 ORTHO05D007668 1.3e-122 444.1 419 53.2
AL3G49850 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 1.7e-122 443.7 428 53.0
QL11p052544 Quercus lobata HOM05D006294 ORTHO05D007668 4.9e-122 442.2 444 50.2
PGR142G2258 Punica granatum HOM05D006294 ORTHO05D007668 8.4e-122 441.4 422 49.5
Thecc.02G053600 Theobroma cacao HOM05D006294 ORTHO05D007668 1.1e-121 441.0 427 52.0
TWI79G1609 Tripterygium wilfordii HOM05D006294 ORTHO05D007668 2.4e-121 439.9 422 52.4
Duzib052G0076 Durio zibethinus HOM05D006294 ORTHO05D007668 1.6e-120 437.2 432 52.1
Haze_02090 Corylus avellana HOM05D006294 ORTHO05D007668 2.1e-120 436.8 422 51.2
Sp3g30330 Schrenkiella parvula HOM05D006294 ORTHO05D007668 6.0e-120 435.3 418 52.4
COL.COLO4_18015 Corchorus olitorius HOM05D006294 ORTHO05D007668 7.9e-120 434.9 440 50.7
Sed0001766 Sechium edule HOM05D006294 ORTHO05D007668 5.1e-119 432.2 426 51.6
BcaB08g34688 Brassica carinata HOM05D006294 ORTHO05D007668 1.5e-118 430.6 419 51.8
Potri.009G139300 Populus trichocarpa HOM05D006294 ORTHO05D007668 1.9e-118 430.3 459 48.4
Aa31LG8G14230 Aethionema arabicum HOM05D006294 ORTHO05D007668 4.3e-118 429.1 450 48.7
Gorai.005G255600 Gossypium raimondii HOM05D006294 ORTHO05D007668 4.3e-118 429.1 438 50.0
CiPaw.06G119700 Carya illinoinensis HOM05D006294 ORTHO05D007668 9.6e-118 427.9 422 48.8
Gohir.D02G227800 Gossypium hirsutum HOM05D006294 ORTHO05D007668 9.6e-118 427.9 438 50.0
CANSAT25G0635 Cannabis sativa HOM05D006294 ORTHO05D007668 1.3e-117 427.6 440 50.0
A03p46230 Brassica napus HOM05D006294 ORTHO05D007668 4.8e-117 425.6 418 50.7
BraA03t13747Z Brassica rapa HOM05D006294 ORTHO05D007668 4.8e-117 425.6 418 50.7
C03p57830 Brassica napus HOM05D006294 ORTHO05D007668 6.2e-117 425.2 418 50.5
BolC3t18054H Brassica oleracea HOM05D006294 ORTHO05D007668 6.2e-117 425.2 418 50.5
GSVIVG01023965001 Vitis vinifera HOM05D006294 ORTHO05D007668 1.2e-115 421.0 423 49.6
Cc09_g10390 Coffea canephora HOM05D006294 ORTHO05D007668 2.6e-115 419.9 421 49.9
CARHR107360 Cardamine hirsuta HOM05D006294 ORTHO05D007668 2.2e-114 416.8 418 51.2
ClCG02G011140 Citrullus lanatus HOM05D006294 ORTHO05D007668 4.9e-114 415.6 437 50.6
Migut.B00046 Erythranthe guttata HOM05D006294 ORTHO05D007668 4.2e-113 412.5 420 49.8
Rhsim11G0078500 Rhododendron simsii HOM05D006294 ORTHO05D007668 4.2e-113 412.5 428 47.4
MELO3C022147.2 Cucumis melo HOM05D006294 ORTHO05D007668 9.3e-113 411.4 437 49.7
Lalb_Chr06g0163771 Lupinus albus HOM05D006294 ORTHO05D007668 3.5e-112 409.5 422 47.9
CsaV3_5G039720 Cucumis sativus L. HOM05D006294 ORTHO05D007668 1.0e-111 407.9 433 50.1
Lj5g0013499 Lotus japonicus HOM05D006294 ORTHO05D007668 5.6e-110 402.1 428 46.7
Lsat_1_v5_gn_4_70040 Lactuca sativa HOM05D006294 ORTHO05D007668 7.4e-110 401.7 434 47.2
FAN20G2719 Fragaria x ananassa HOM05D006294 ORTHO05D007668 3.7e-109 399.4 353 55.0
HanXRQChr10g0300361 Helianthus annuus HOM05D006294 ORTHO05D007668 2.4e-108 396.7 423 48.0
ECA234G3875 Erigeron canadensis HOM05D006294 ORTHO05D007668 4.0e-108 396.0 432 46.3
TPR.G2447 Trifolium pratense HOM05D006294 ORTHO05D007668 1.2e-107 394.4 430 47.7
Nn5g30865 Nelumbo nucifera HOM05D006294 ORTHO05D007668 1.5e-107 394.0 420 47.6
TPR.G2441 Trifolium pratense HOM05D006294 ORTHO05D007668 5.8e-107 392.1 431 47.1
arahy.Tifrunner.gnm1.ann1.DZVX1N Arachis hypogaea HOM05D006294 ORTHO05D007668 1.0e-106 391.3 421 46.8
arahy.Tifrunner.gnm1.ann1.DS4D2V Arachis hypogaea HOM05D006294 ORTHO05D007668 1.3e-106 391.0 421 46.8
PSO541G2965 Papaver somniferum HOM05D006294 ORTHO05D007668 1.9e-105 387.1 424 48.1
Oeu045089.1 Olea europaea HOM05D006294 ORTHO05D007668 7.1e-105 385.2 430 45.8
Cfa005297 Carpinus fangiana HOM05D006294 ORTHO05D007668 9.3e-105 384.8 422 46.4
Phvul.007G017200 Phaseolus vulgaris HOM05D006294 ORTHO05D007668 7.9e-104 381.7 432 46.1
VMungo0720G0114 Vigna mungo HOM05D006294 ORTHO05D007668 2.3e-103 380.2 431 46.4
Medtr1g113720 Medicago truncatula HOM05D006294 ORTHO05D007668 2.5e-102 376.7 437 45.3
Glyma.20G105600 Glycine max HOM05D006294 ORTHO05D007668 4.3e-102 375.9 432 46.5
THA.LOC104819661 Tarenaya hassleriana HOM05D006294 ORTHO05D007668 3.7e-101 372.9 418 46.9
unitig_21.g20844 Utricularia gibba HOM05D006294 ORTHO05D007668 1.5e-99 367.5 424 43.6
Eucgr.I01461 Eucalyptus grandis HOM05D006294 ORTHO05D007668 3.6e-96 356.3 423 44.9
Nitab4.5_0028029g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 3.0e-95 353.2 418 44.3
MSTRG.19967 Avicennia marina HOM05D006294 ORTHO05D007668 8.7e-95 351.7 421 43.5
Peaxi162Scf00042g01217 Petunia axillaris HOM05D006294 ORTHO05D007668 3.1e-92 343.2 420 44.5
Aqoxy6G01907 Aquilegia oxysepala HOM05D006294 ORTHO05D007668 6.9e-92 342.0 420 43.8
Cpa.g.sc20.124 Carica papaya HOM05D006294 ORTHO05D007668 2.0e-91 340.5 418 41.9
Sabra09G0107900 Salix brachista HOM05D006294 ORTHO05D007668 1.1e-89 334.7 429 42.0
PGSC0003DMG400018933 Solanum tuberosum HOM05D006294 ORTHO05D007668 4.2e-89 332.8 446 41.7
Atru.BG.70.p Acer truncatum HOM05D006294 ORTHO05D007668 1.2e-88 331.3 356 50.3
Solyc10g055700.2 Solanum lycopersicum HOM05D006294 ORTHO05D007668 2.7e-88 330.1 446 41.7
Sopen00g003210 Solanum pennellii HOM05D006294 ORTHO05D007668 4.6e-88 329.3 446 41.5
BcaC01g02964 Brassica carinata HOM05D006294 ORTHO05D007668 7.9e-88 328.6 360 46.9
Ca_03291_v3 Cicer arietinum L. HOM05D006294 ORTHO05D007668 3.9e-87 326.2 329 48.9
CAN.G1.72 Capsicum annuum HOM05D006294 ORTHO05D007668 2.6e-86 323.6 420 41.9
PSO675G2411 Papaver somniferum HOM05D006294 ORTHO05D007668 3.3e-86 323.2 427 42.6
Nitab4.5_0016084g0010 Nicotiana tabacum HOM05D006294 ORTHO05D007668 4.4e-86 322.8 418 41.9
MBI05_g12855_MAGBIO Magnolia biondii HOM05D006294 ORTHO05D007668 1.7e-82 310.8 428 41.4
ATR0661G309 Amborella trichopoda HOM05D006294 ORTHO05D007668 3.8e-82 309.7 422 41.0
SGA_v2.0_scaffold32G13314 Striga asiatica HOM05D006294 ORTHO05D007668 7.0e-76 288.9 452 37.6
Sc14g0000720 Simmondsia chinensis HOM05D006294 ORTHO05D007668 6.5e-74 282.3 248 52.8
Gohir.A03G206400 Gossypium hirsutum HOM05D006294 ORTHO05D007668 3.3e-70 270.0 439 39.2
Lsat_1_v5_gn_6_58781 Lactuca sativa HOM05D006294 ORTHO05D007668 2.0e-67 260.8 289 47.4
Carub.0135s0001 Capsella rubella HOM05D006294 ORTHO05D007668 8.5e-66 255.4 299 44.5
AL3G49870 Arabidopsis lyrata HOM05D006294 ORTHO05D007668 6.8e-63 245.7 217 56.2
Nn6g32171 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.4e-62 243.4 236 49.2
CDE05G1346 Ceratophyllum demersum HOM05D006294 ORTHO05D007668 4.4e-62 243.0 430 36.0
Os02g0120000 Oryza sativa ssp. japonica HOM05D006294 ORTHO05D007668 4.4e-54 216.5 416 33.2
Nn1g05690 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.0e-51 207.6 186 54.3
Zm00001eb230250 Zea mays HOM05D006294 ORTHO05D007668 3.6e-48 196.8 416 31.0
HPP92_004930 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.2e-46 191.8 177 50.8
arahy.Tifrunner.gnm1.ann1.K1Y931 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.5e-30 136.0 167 40.7
Nn3g21918 Nelumbo nucifera HOM05D006294 ORTHO05D007668 2.2e-29 134.4 171 40.9
HPP92_004921 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.4e-28 131.7 145 44.8
Mapoly0035s0104 Marchantia polymorpha HOM05D006294 ORTHO05D007668 7.1e-28 129.4 435 24.6
Pp3c16_9880 Physcomitrium patens HOM05D006294 ORTHO05D007668 1.3e-26 125.2 361 24.7
HPP92_004929 Vanilla planifolia HOM05D006294 ORTHO05D007668 1.1e-25 122.1 212 37.7
arahy.Tifrunner.gnm1.ann1.SDBD8X Arachis hypogaea HOM05D006294 ORTHO05D007668 1.2e-19 102.1 179 32.4
arahy.Tifrunner.gnm1.ann1.DT0J5B Arachis hypogaea HOM05D006294 ORTHO05D007668 4.6e-19 100.1 139 38.8
Sc14g0000730 Simmondsia chinensis HOM05D006294 ORTHO05D007668 3.0e-18 97.4 113 48.7
arahy.Tifrunner.gnm1.ann1.A4L1LT Arachis hypogaea HOM05D006294 ORTHO05D007668 4.0e-15 87.0 216 27.3
arahy.Tifrunner.gnm1.ann1.0NBS6K Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-15 85.9 121 35.5
arahy.Tifrunner.gnm1.ann1.27KW97 Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-15 85.9 121 35.5
arahy.Tifrunner.gnm1.ann1.5K47IW Arachis hypogaea HOM05D006294 ORTHO05D001225 2.6e-14 84.3 115 34.8
Nn4g23847 Nelumbo nucifera HOM05D006294 ORTHO05D007668 3.4e-14 84.0 137 38.0
arahy.Tifrunner.gnm1.ann1.ED6YY1 Arachis hypogaea HOM05D006294 ORTHO05D007668 7.6e-14 82.8 127 37.0
arahy.Tifrunner.gnm1.ann1.VQM2ML Arachis hypogaea HOM05D006294 ORTHO05D007668 8.4e-13 79.3 111 35.1
arahy.Tifrunner.gnm1.ann1.PQ7N7P Arachis hypogaea HOM05D006294 ORTHO05D007668 4.2e-12 77.0 129 34.9
AagrBONN_evm.TU.Sc2ySwM_117.2521 Anthoceros agrestis HOM05D004127 ORTHO05D005119 5.1e-10 70.1 243 24.7
Mapoly0089s0054 Marchantia polymorpha HOM05D004079 ORTHO05D005437 2.5e-09 67.8 281 24.2
CBR_g12023 Chara braunii HOM05D001779 ORTHO05D001753 5.6e-09 66.6 98 31.6
AT3G53170 Arabidopsis thaliana HOM05D001779 ORTHO05D001753 7.3e-09 66.2 198 22.7
CBR_g9159 Chara braunii HOM05D004127 ORTHO05D005119 3.6e-08 63.9 100 33.0
arahy.Tifrunner.gnm1.ann1.QPA1DX Arachis hypogaea HOM05D006294 ORTHO05D007668 8.1e-08 62.8 159 29.6
Carub.0005s1970 Capsella rubella HOM05D001779 ORTHO05D001753 8.1e-08 62.8 198 22.7
CARHR163140 Cardamine hirsuta HOM05D001779 ORTHO05D001753 8.1e-08 62.8 197 23.4
Pp3c7_10060 Physcomitrium patens HOM05D004079 ORTHO05D005437 8.1e-08 62.8 91 30.8
GSVIVG01032162001 Vitis vinifera HOM05D001779 ORTHO05D001753 4.0e-07 60.5 199 24.1
Prupe.2G019900 Prunus persica HOM05D001779 ORTHO05D001753 5.3e-07 60.1 205 22.9
Solyc08g045780.4 Solanum lycopersicum HOM05D001779 ORTHO05D001753 5.3e-07 60.1 198 23.7
arahy.Tifrunner.gnm1.ann1.YH938E Arachis hypogaea HOM05D006294 ORTHO05D007668 9.0e-07 59.3 105 32.4
HPP92_017249 Vanilla planifolia HOM05D004127 ORTHO05D005119 9.0e-07 59.3 99 29.3
HPP92_017253 Vanilla planifolia HOM05D004127 ORTHO05D005119 9.0e-07 59.3 99 29.3
Aqoxy2G02720 Aquilegia oxysepala HOM05D004127 ORTHO05D005119 1.2e-06 58.9 94 29.8
Os12g0562300 Oryza sativa ssp. japonica HOM05D004127 ORTHO05D005119 1.2e-06 58.9 242 25.2
PGSC0003DMG400003133 Solanum tuberosum HOM05D001779 ORTHO05D001753 1.2e-06 58.9 198 23.2
Zm00001eb028500 Zea mays HOM05D004127 ORTHO05D005119 1.2e-06 58.9 241 22.4
SMO365G0082 Selaginella moellendorffii HOM05D004127 ORTHO05D005119 1.5e-06 58.5 91 33.0
TAR633G1986 Trochodendron aralioides HOM05D001779 ORTHO05D001753 1.5e-06 58.5 198 23.7
arahy.Tifrunner.gnm1.ann1.VRB4HM Arachis hypogaea HOM05D006294 ORTHO05D007668 2.0e-06 58.2 65 41.5
BcaC07g39673 Brassica carinata HOM05D001779 ORTHO05D001753 2.0e-06 58.2 197 24.4
C08p28390 Brassica napus HOM05D001779 ORTHO05D001753 2.0e-06 58.2 197 24.4
BolC8t50449H Brassica oleracea HOM05D001779 ORTHO05D001753 2.0e-06 58.2 197 24.4
Lj9A638T72 Lonicera japonica HOM05D001779 ORTHO05D001753 2.0e-06 58.2 198 20.2
HPP92_004920 Vanilla planifolia HOM05D006294 ORTHO05D007668 2.0e-06 58.2 62 45.2
Manes.01G229400 Manihot esculenta HOM05D004127 ORTHO05D005119 2.6e-06 57.8 94 33.0
Sabra02G0162500 Salix brachista HOM05D004127 ORTHO05D005119 2.6e-06 57.8 94 30.9
Glyma.14G007500 Glycine max HOM05D001779 ORTHO05D001753 3.4e-06 57.4 239 23.0
MD02G1305700 Malus domestica HOM05D001779 ORTHO05D001753 4.5e-06 57.0 281 21.4
PRCOL_00003068 Prasinoderma coloniale HOM05D004127 ORTHO05D005119 4.5e-06 57.0 92 32.6
Sabra14G0088000 Salix brachista HOM05D004127 ORTHO05D005119 4.5e-06 57.0 94 30.9
TAR633G2494 Trochodendron aralioides HOM05D001779 ORTHO05D001753 4.5e-06 57.0 202 21.8
SEGI_31683 Sequoiadendron giganteum HOM05D001779 ORTHO05D001753 5.8e-06 56.6 220 21.4
CANSAT80G2404 Cannabis sativa HOM05D001779 ORTHO05D001753 7.6e-06 56.2 198 21.7
Lalb_Chr25g0282471 Lupinus albus HOM05D001779 ORTHO05D001753 7.6e-06 56.2 198 21.7
MD02G1306000 Malus domestica HOM05D001779 ORTHO05D001753 7.6e-06 56.2 187 22.5
Pp3c14_15490 Physcomitrium patens HOM05D004127 ORTHO05D005119 7.6e-06 56.2 94 28.7
QL04p008865 Quercus lobata HOM05D001779 ORTHO05D001753 7.6e-06 56.2 198 23.2
CSS0004396 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 9.9e-06 55.8 123 26.0
CSS0039833 Camellia sinensis var. sinensis HOM05D001779 ORTHO05D001753 9.9e-06 55.8 123 26.0
CANSAT25G0729 Cannabis sativa HOM05D004127 ORTHO05D005119 9.9e-06 55.8 93 30.1
Manes.05G014100 Manihot esculenta HOM05D004127 ORTHO05D005119 9.9e-06 55.8 94 29.8
Potri.014G118500 Populus trichocarpa HOM05D004127 ORTHO05D005119 9.9e-06 55.8 94 29.8


User provided reference genes

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