Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046280 Amaranthus hybridus HOM05D004454 ORTHO05D005462 6.0e-253 877.5 604 100.0
AUR62008292 Chenopodium quinoa HOM05D004454 ORTHO05D005462 5.9e-208 728.0 584 89.6
AUR62031054 Chenopodium quinoa HOM05D004454 ORTHO05D005462 5.9e-200 701.4 584 88.4
EL10Ac5g10847 Beta vulgaris HOM05D004454 ORTHO05D005462 1.2e-192 677.2 696 75.3
Hund02707 Selenicereus undatus HOM05D004454 ORTHO05D005462 7.7e-192 674.5 567 86.9
CSS0019873 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 4.0e-180 635.6 578 68.5
CSS0024488 Camellia sinensis var. sinensis HOM05D004454 ORTHO05D005462 4.0e-180 635.6 578 68.5
Duzib084G0805 Durio zibethinus HOM05D004454 ORTHO05D005462 3.4e-179 632.5 578 70.1
Thecc.03G002900 Theobroma cacao HOM05D004454 ORTHO05D005462 4.4e-179 632.1 578 71.1
Actinidia19078 Actinidia chinensis HOM05D004454 ORTHO05D005462 2.2e-178 629.8 578 69.7
Dinv02657 Davidia involucrata HOM05D004454 ORTHO05D005462 3.7e-178 629.0 580 67.1
Hma1.2p1_0002F.1_g002910 Hydrangea macrophylla HOM05D004454 ORTHO05D005462 3.7e-178 629.0 578 66.6
QL10p013674 Quercus lobata HOM05D004454 ORTHO05D005462 4.8e-178 628.6 578 67.1
Haze_07431 Corylus avellana HOM05D004454 ORTHO05D005462 1.4e-177 627.1 578 67.1
Lj9A454G67 Lonicera japonica HOM05D004454 ORTHO05D005462 7.0e-177 624.8 579 66.8
Rhsim12G0161100 Rhododendron simsii HOM05D004454 ORTHO05D005462 1.6e-176 623.6 582 67.4
Cfa019062 Carpinus fangiana HOM05D004454 ORTHO05D005462 4.5e-176 622.1 578 67.3
Ciclev10019469m.g Citrus clementina HOM05D004454 ORTHO05D005462 5.9e-176 621.7 578 69.9
Eucgr.B00957 Eucalyptus grandis HOM05D004454 ORTHO05D005462 1.3e-175 620.5 578 70.1
Gohir.A10G215100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 2.9e-175 619.4 578 69.0
Gorai.011G255100 Gossypium raimondii HOM05D004454 ORTHO05D005462 8.6e-175 617.8 578 69.0
Lalb_Chr19g0133161 Lupinus albus HOM05D004454 ORTHO05D005462 4.2e-174 615.5 578 67.8
CsaV3_1G008170 Cucumis sativus L. HOM05D004454 ORTHO05D005462 9.5e-174 614.4 578 66.3
Eucgr.B00321 Eucalyptus grandis HOM05D004454 ORTHO05D005462 9.5e-174 614.4 578 67.1
Gohir.D10G224100 Gossypium hirsutum HOM05D004454 ORTHO05D005462 9.5e-174 614.4 578 68.9
MELO3C002234.2 Cucumis melo HOM05D004454 ORTHO05D005462 1.2e-173 614.0 578 66.3
vmacro16584 Vaccinium macrocarpon HOM05D004454 ORTHO05D005462 1.6e-173 613.6 604 67.2
ClCG01G014140 Citrullus lanatus HOM05D004454 ORTHO05D005462 2.1e-173 613.2 578 66.3
QL02p081076 Quercus lobata HOM05D004454 ORTHO05D005462 2.8e-173 612.8 621 62.8
QL10p027831 Quercus lobata HOM05D004454 ORTHO05D005462 2.8e-173 612.8 621 62.8
Potri.012G075000 Populus trichocarpa HOM05D004454 ORTHO05D005462 4.7e-173 612.1 578 71.1
Glyma.11G026400 Glycine max HOM05D004454 ORTHO05D005462 8.0e-173 611.3 578 65.1
Manes.14G071000 Manihot esculenta HOM05D004454 ORTHO05D005462 1.0e-172 610.9 578 65.4
Nn4g22938 Nelumbo nucifera HOM05D004454 ORTHO05D005462 2.3e-172 609.8 578 68.5
Sed0026284 Sechium edule HOM05D004454 ORTHO05D005462 2.3e-172 609.8 578 66.3
TWI60G0736 Tripterygium wilfordii HOM05D004454 ORTHO05D005462 4.0e-172 609.0 578 67.3
VMungo1215G3435 Vigna mungo HOM05D004454 ORTHO05D005462 1.5e-171 607.1 578 65.4
Ca_00529_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 4.4e-171 605.5 578 70.9
Prupe.5G180200 Prunus persica HOM05D004454 ORTHO05D005462 4.4e-171 605.5 578 65.4
arahy.Tifrunner.gnm1.ann1.AQXS59 Arachis hypogaea HOM05D004454 ORTHO05D005462 7.5e-171 604.7 578 76.6
Lj3g0012006 Lotus japonicus HOM05D004454 ORTHO05D005462 7.5e-171 604.7 578 64.7
Sabra12G0053400 Salix brachista HOM05D004454 ORTHO05D005462 7.5e-171 604.7 580 70.0
TAR374G1062 Trochodendron aralioides HOM05D004454 ORTHO05D005462 9.8e-171 604.4 578 65.7
Cpa.g.sc35.32 Carica papaya HOM05D004454 ORTHO05D005462 1.7e-170 603.6 579 65.5
Ca_26268_v3 Cicer arietinum L. HOM05D004454 ORTHO05D005462 1.7e-170 603.6 578 67.8
Lalb_Chr03g0031901 Lupinus albus HOM05D004454 ORTHO05D005462 3.7e-170 602.4 578 67.1
Phvul.002G154200 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 4.9e-170 602.1 578 64.9
Psat4g146120 Pisum sativum HOM05D004454 ORTHO05D005462 4.1e-169 599.0 578 64.4
TPR.G25821 Trifolium pratense HOM05D004454 ORTHO05D005462 7.0e-169 598.2 578 64.9
Solyc03g113740.4 Solanum lycopersicum HOM05D004454 ORTHO05D005462 1.6e-168 597.0 582 65.5
Sopen03g032790 Solanum pennellii HOM05D004454 ORTHO05D005462 1.6e-168 597.0 582 65.5
MD14G1188000 Malus domestica HOM05D004454 ORTHO05D005462 7.8e-168 594.7 579 65.3
MD06G1182000 Malus domestica HOM05D004454 ORTHO05D005462 2.9e-167 592.8 579 65.3
CAN.G853.25 Capsicum annuum HOM05D004454 ORTHO05D005462 5.6e-166 588.6 582 65.5
DCAR_026102 Daucus carota HOM05D004454 ORTHO05D005462 9.5e-166 587.8 578 65.1
RcHm_v2.0_Chr7g0179821 Rosa chinensis HOM05D004454 ORTHO05D005462 8.0e-165 584.7 578 62.5
MSTRG.9661 Avicennia marina HOM05D004454 ORTHO05D005462 1.4e-164 583.9 585 64.1
Migut.I00064 Erythranthe guttata HOM05D004454 ORTHO05D005462 2.3e-164 583.2 585 63.9
SalBow5G4570 Salvia bowleyana HOM05D004454 ORTHO05D005462 3.0e-164 582.8 585 63.8
Oeu016330.1 Olea europaea HOM05D004454 ORTHO05D005462 1.2e-163 580.9 583 64.3
PSO013G0161 Papaver somniferum HOM05D004454 ORTHO05D005462 2.6e-163 579.7 581 63.5
PSO832G1188 Papaver somniferum HOM05D004454 ORTHO05D005462 2.6e-163 579.7 581 63.9
Sp5g13890 Schrenkiella parvula HOM05D004454 ORTHO05D005462 2.6e-163 579.7 578 63.0
Medtr1g103750 Medicago truncatula HOM05D004454 ORTHO05D005462 3.4e-163 579.3 580 63.4
Lsat_1_v5_gn_5_17960 Lactuca sativa HOM05D004454 ORTHO05D005462 9.8e-163 577.8 571 61.6
Sc04g0002160 Simmondsia chinensis HOM05D004454 ORTHO05D005462 6.4e-162 575.1 561 65.2
FAN08G3623 Fragaria x ananassa HOM05D004454 ORTHO05D005462 8.3e-162 574.7 578 61.8
FAN04G1717 Fragaria x ananassa HOM05D004454 ORTHO05D005462 1.4e-161 573.9 578 61.6
FAN13G0079 Fragaria x ananassa HOM05D004454 ORTHO05D005462 7.0e-161 571.6 578 61.6
FvH4_5g16310 Fragaria vesca HOM05D004454 ORTHO05D005462 1.6e-160 570.5 578 61.4
Medtr8g021140 Medicago truncatula HOM05D004454 ORTHO05D005462 3.5e-160 569.3 578 62.8
GSVIVG01000277001 Vitis vinifera HOM05D004454 ORTHO05D005462 3.5e-160 569.3 578 55.4
Nn3g17037 Nelumbo nucifera HOM05D004454 ORTHO05D005462 4.6e-160 568.9 552 64.3
Peaxi162Scf00017g02211 Petunia axillaris HOM05D004454 ORTHO05D005462 4.6e-160 568.9 593 62.1
FAN18G3350 Fragaria x ananassa HOM05D004454 ORTHO05D005462 6.0e-160 568.5 578 61.2
Thhalv10010239m.g Eutrema salsugineum HOM05D004454 ORTHO05D005462 7.8e-160 568.2 578 61.9
SGA_v2.0_scaffold467G52036 Striga asiatica HOM05D004454 ORTHO05D005462 1.7e-159 567.0 602 61.6
BcaB05g22913 Brassica carinata HOM05D004454 ORTHO05D005462 2.3e-159 566.6 579 61.8
Carub.0005s1425 Capsella rubella HOM05D004454 ORTHO05D005462 2.3e-159 566.6 578 62.1
AL5G27480 Arabidopsis lyrata HOM05D004454 ORTHO05D005462 5.0e-159 565.5 578 61.9
BcaC09g49851 Brassica carinata HOM05D004454 ORTHO05D005462 5.0e-159 565.5 579 61.7
BolC1t03163H Brassica oleracea HOM05D004454 ORTHO05D005462 1.5e-158 563.9 579 61.5
C01p31930 Brassica napus HOM05D004454 ORTHO05D005462 2.5e-158 563.1 579 61.5
ECA246G3380 Erigeron canadensis HOM05D004454 ORTHO05D005462 7.3e-158 561.6 583 61.2
AT3G48150 Arabidopsis thaliana HOM05D004454 ORTHO05D005462 1.2e-157 560.8 578 61.6
A01p25460 Brassica napus HOM05D004454 ORTHO05D005462 3.6e-157 559.3 579 61.1
BraA01t02468Z Brassica rapa HOM05D004454 ORTHO05D005462 4.7e-157 558.9 579 61.1
HanXRQChr05g0155441 Helianthus annuus HOM05D004454 ORTHO05D005462 8.9e-156 554.7 568 62.1
Glyma.12G016100 Glycine max HOM05D004454 ORTHO05D005462 2.6e-155 553.1 549 63.4
MBI04_g34104_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.7e-154 550.4 585 59.8
A06p19550 Brassica napus HOM05D004454 ORTHO05D005462 2.9e-154 549.7 578 60.2
BraA06t25035Z Brassica rapa HOM05D004454 ORTHO05D005462 2.9e-154 549.7 578 60.2
BcaB01g00842 Brassica carinata HOM05D004454 ORTHO05D005462 1.1e-153 547.7 578 60.4
C08p23030 Brassica napus HOM05D004454 ORTHO05D005462 3.2e-153 546.2 578 60.0
BolC8t49941H Brassica oleracea HOM05D004454 ORTHO05D005462 3.2e-153 546.2 578 60.0
BcaC07g39296 Brassica carinata HOM05D004454 ORTHO05D005462 9.2e-153 544.7 578 59.9
HanXRQChr14g0438801 Helianthus annuus HOM05D004454 ORTHO05D005462 2.7e-152 543.1 568 61.6
THA.LOC104799671 Tarenaya hassleriana HOM05D004454 ORTHO05D005462 3.5e-152 542.7 592 59.0
PGSC0003DMG400024579 Solanum tuberosum HOM05D004454 ORTHO05D005462 1.7e-151 540.4 582 62.0
Nitab4.5_0000026g0380 Nicotiana tabacum HOM05D004454 ORTHO05D005462 7.3e-150 535.0 587 60.6
Aqoxy3G03142 Aquilegia oxysepala HOM05D004454 ORTHO05D005462 9.5e-150 534.6 580 59.8
Nitab4.5_0003577g0020 Nicotiana tabacum HOM05D004454 ORTHO05D005462 1.1e-148 531.2 587 60.8
Aa31LG4G16750 Aethionema arabicum HOM05D004454 ORTHO05D005462 4.6e-144 515.8 551 61.9
Cc04_g15930 Coffea canephora HOM05D004454 ORTHO05D005462 3.6e-141 506.1 586 59.0
GSVIVG01022319001 Vitis vinifera HOM05D004454 ORTHO05D005462 1.4e-140 504.2 578 52.1
unitig_0.g2210 Utricularia gibba HOM05D004454 ORTHO05D005462 1.8e-140 503.8 595 58.3
Ciclev10004829m.g Citrus clementina HOM05D004454 ORTHO05D005462 2.4e-140 503.4 494 64.6
Zm00001eb249420 Zea mays HOM05D004454 ORTHO05D005462 6.4e-138 495.4 595 56.3
ATR0057G034 Amborella trichopoda HOM05D004454 ORTHO05D005462 1.1e-137 494.6 579 56.8
MBI01_g40850_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.9e-137 493.8 528 49.1
MD13G1029000 Malus domestica HOM05D004454 ORTHO05D005462 9.2e-137 491.5 494 64.2
DCAR_031479 Daucus carota HOM05D004454 ORTHO05D005462 1.3e-135 487.6 639 52.9
SHI46877 Sapria himalayana HOM05D004454 ORTHO05D005462 5.1e-135 485.7 532 61.3
Os02g0656300 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 8.7e-135 485.0 593 55.6
Phvul.007G021500 Phaseolus vulgaris HOM05D004454 ORTHO05D005462 8.1e-133 478.4 494 63.0
HPP92_012132 Vanilla planifolia HOM05D004454 ORTHO05D005462 4.3e-126 456.1 609 51.4
CDE04G0088 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 3.1e-124 449.9 559 46.2
MBI01_g33693_MAGBIO Magnolia biondii HOM05D004454 ORTHO05D005462 1.1e-118 431.4 585 43.2
Actinidia34963 Actinidia chinensis HOM05D004454 ORTHO05D005462 4.2e-113 412.9 437 66.1
CiPaw.12G022700 Carya illinoinensis HOM05D004454 ORTHO05D005462 2.7e-112 410.2 437 63.4
Eucgr.B00325 Eucalyptus grandis HOM05D004454 ORTHO05D005462 1.0e-111 408.3 441 63.9
arahy.Tifrunner.gnm1.ann1.7D20F1 Arachis hypogaea HOM05D004454 ORTHO05D005462 2.3e-111 407.1 454 76.2
Glyma.01G216500 Glycine max HOM05D004454 ORTHO05D005462 1.6e-109 401.0 437 62.7
TAR629G2352 Trochodendron aralioides HOM05D004454 ORTHO05D005462 6.9e-108 395.6 437 61.3
SEGI_02939 Sequoiadendron giganteum HOM05D004454 ORTHO05D005462 1.8e-103 380.9 604 47.7
Mapoly0091s0003 Marchantia polymorpha HOM05D004454 ORTHO05D005462 5.7e-102 375.9 572 48.8
CARHR156870 Cardamine hirsuta HOM05D004454 ORTHO05D005462 7.4e-102 375.6 449 57.9
AagrBONN_evm.TU.Sc2ySwM_368.1566 Anthoceros agrestis HOM05D004454 ORTHO05D005462 5.5e-97 359.4 553 49.5
Pp3c11_17870 Physcomitrium patens HOM05D004454 ORTHO05D005462 2.3e-95 354.0 573 46.9
SMO147G0289 Selaginella moellendorffii HOM05D004454 ORTHO05D005462 2.3e-87 327.4 477 50.7
CBR_g45228 Chara braunii HOM05D004454 ORTHO05D005462 2.0e-78 297.7 490 52.0
COL.COLO4_21447 Corchorus olitorius HOM05D000359 ORTHO05D000251 8.0e-72 275.8 550 38.9
MD17G1271900 Malus domestica HOM05D004454 ORTHO05D005462 5.7e-70 269.6 227 61.2
CDE12G0785 Ceratophyllum demersum HOM05D004454 ORTHO05D005462 1.7e-69 268.1 381 39.9
Atru.chr9.2395 Acer truncatum HOM05D004454 ORTHO05D005462 1.5e-65 255.0 197 68.5
Medtr8g447330 Medicago truncatula HOM05D004454 ORTHO05D005462 6.8e-63 246.1 528 34.5
MCO11G723 Micromonas commoda HOM05D004454 ORTHO05D005462 5.0e-50 203.4 573 37.3
Glyma.01G216550 Glycine max HOM05D004454 ORTHO05D005462 1.2e-48 198.7 132 73.5
Atru.chr9.2393 Acer truncatum HOM05D004454 ORTHO05D005462 3.6e-48 197.2 128 71.1
MD17G1272000 Malus domestica HOM05D004454 ORTHO05D005462 1.4e-44 185.3 122 69.7
Os06g0679100 Oryza sativa ssp. japonica HOM05D004454 ORTHO05D005462 7.3e-41 172.9 123 65.9
Cre16.g681578 Chlamydomonas reinhardtii HOM05D004454 ORTHO05D005462 9.5e-41 172.6 638 35.4
COL.COLO4_19778 Corchorus olitorius HOM05D004454 ORTHO05D005462 2.1e-35 154.8 129 63.6
Dinv13133 Davidia involucrata HOM05D004454 ORTHO05D005462 7.8e-35 152.9 117 69.2
Dinv13132 Davidia involucrata HOM05D004454 ORTHO05D005462 3.9e-34 150.6 98 69.4
FAN21G3202 Fragaria x ananassa HOM05D004454 ORTHO05D035857 7.1e-28 129.8 121 53.7
FAN24G1390 Fragaria x ananassa HOM05D004454 ORTHO05D035857 9.2e-28 129.4 117 55.6
TAR629G2581 Trochodendron aralioides HOM05D004454 ORTHO05D005462 7.8e-27 126.3 81 77.8
Cfa023754 Carpinus fangiana HOM05D004454 ORTHO05D005462 6.2e-24 116.7 359 28.4
Glyma.11G109202 Glycine max HOM05D004454 ORTHO05D005462 1.4e-23 115.5 99 64.6
Atru.chr9.2394 Acer truncatum HOM05D004454 ORTHO05D005462 5.2e-23 113.6 75 73.3
Gohir.A01G024750 Gossypium hirsutum HOM05D004454 ORTHO05D005462 1.4e-20 105.5 69 72.5
COL.COLO4_19780 Corchorus olitorius HOM05D004454 ORTHO05D005462 3.2e-20 104.4 106 56.6
MBI01_g40849_MAGBIO Magnolia biondii HOM05D000031 ORTHO05D000030 9.3e-20 102.8 116 46.6
FAN16G3295 Fragaria x ananassa HOM05D004454 ORTHO05D035857 4.9e-13 80.5 154 35.7
FAN22G0042 Fragaria x ananassa HOM05D004454 ORTHO05D005462 4.9e-13 80.5 68 58.8
ATR0767G023 Amborella trichopoda HOM05D004454 ORTHO05D005462 1.1e-12 79.3 60 66.7
ATR0767G108 Amborella trichopoda HOM05D004454 ORTHO05D005462 6.0e-11 73.6 65 56.9
ATR0767G252 Amborella trichopoda HOM05D004454 ORTHO05D063599 9.9e-06 56.2 66 47.0


User provided reference genes

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