Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046180 Amaranthus hybridus HOM05D006519 ORTHO05D008306 3.3e-161 571.6 284 100.0
AUR62008282 Chenopodium quinoa HOM05D006519 ORTHO05D008306 4.5e-118 428.3 275 75.6
Hund02710 Selenicereus undatus HOM05D006519 ORTHO05D008306 2.9e-117 425.6 284 75.0
EL10Ac5g10829 Beta vulgaris HOM05D006519 ORTHO05D008306 5.5e-116 421.4 329 66.6
Sc12g0005660 Simmondsia chinensis HOM05D006519 ORTHO05D008306 7.2e-108 394.4 274 70.8
CSS0018091 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 3.4e-105 385.6 282 65.6
Nitab4.5_0003386g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 2.2e-104 382.9 273 66.3
DCAR_031285 Daucus carota HOM05D006519 ORTHO05D008306 1.1e-103 380.6 281 66.2
CSS0037543 Camellia sinensis var. sinensis HOM05D006519 ORTHO05D008306 1.8e-103 379.8 282 64.5
Actinidia34959 Actinidia chinensis HOM05D006519 ORTHO05D008306 3.1e-103 379.0 273 67.0
TAR629G1196 Trochodendron aralioides HOM05D006519 ORTHO05D008306 3.1e-103 379.0 272 67.6
PGSC0003DMG400024585 Solanum tuberosum HOM05D006519 ORTHO05D008306 1.6e-102 376.7 274 65.3
RcHm_v2.0_Chr7g0179701 Rosa chinensis HOM05D006519 ORTHO05D008306 2.0e-102 376.3 284 64.8
CiPaw.11G031700 Carya illinoinensis HOM05D006519 ORTHO05D008306 5.9e-102 374.8 271 68.3
ECA232G3316 Erigeron canadensis HOM05D006519 ORTHO05D008306 1.3e-101 373.6 274 67.2
Nn3g17016 Nelumbo nucifera HOM05D006519 ORTHO05D008306 1.7e-101 373.2 272 66.5
CAN.G853.13 Capsicum annuum HOM05D006519 ORTHO05D008306 2.9e-101 372.5 275 65.8
Sopen03g032910 Solanum pennellii HOM05D006519 ORTHO05D008306 3.8e-101 372.1 272 66.2
Duzib068G0259 Durio zibethinus HOM05D006519 ORTHO05D008306 8.6e-101 370.9 277 64.6
Solyc03g113860.2 Solanum lycopersicum HOM05D006519 ORTHO05D008306 8.6e-101 370.9 272 65.8
Haze_07439 Corylus avellana HOM05D006519 ORTHO05D008306 1.5e-100 370.2 272 67.3
GSVIVG01007824001 Vitis vinifera HOM05D006519 ORTHO05D008306 1.5e-100 370.2 277 65.0
MBI14_g12785_MAGBIO Magnolia biondii HOM05D006519 ORTHO05D008306 3.3e-100 369.0 271 66.8
MD06G1181000 Malus domestica HOM05D006519 ORTHO05D008306 3.3e-100 369.0 276 67.0
Oeu016332.2 Olea europaea HOM05D006519 ORTHO05D008306 3.3e-100 369.0 291 63.2
MSTRG.11426 Avicennia marina HOM05D006519 ORTHO05D008306 4.3e-100 368.6 284 64.8
Thecc.03G004500 Theobroma cacao HOM05D006519 ORTHO05D008306 9.5e-100 367.5 284 64.1
Cc04_g13570 Coffea canephora HOM05D006519 ORTHO05D008306 3.6e-99 365.5 285 62.8
Gorai.012G002000 Gossypium raimondii HOM05D006519 ORTHO05D008306 3.6e-99 365.5 279 63.4
Lsat_1_v5_gn_4_73480 Lactuca sativa HOM05D006519 ORTHO05D008306 6.1e-99 364.8 273 66.3
Sabra12G0054300 Salix brachista HOM05D006519 ORTHO05D008306 6.1e-99 364.8 284 60.9
Ciclev10021480m.g Citrus clementina HOM05D006519 ORTHO05D008306 1.4e-98 363.6 274 63.5
Gohir.A05G415200 Gossypium hirsutum HOM05D006519 ORTHO05D008306 1.8e-98 363.2 270 64.1
Potri.012G076100 Populus trichocarpa HOM05D006519 ORTHO05D008306 3.0e-98 362.5 286 61.9
Gohir.D04G001000 Gossypium hirsutum HOM05D006519 ORTHO05D008306 5.2e-98 361.7 278 63.3
CANSAT80G0931 Cannabis sativa HOM05D006519 ORTHO05D008306 6.8e-98 361.3 273 62.6
FvH4_5g16400 Fragaria vesca HOM05D006519 ORTHO05D008306 1.5e-97 360.1 273 64.1
FAN18G3891 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.5e-97 360.1 273 64.1
TWI81G0852 Tripterygium wilfordii HOM05D006519 ORTHO05D008306 2.0e-97 359.8 279 62.4
Migut.I00056 Erythranthe guttata HOM05D006519 ORTHO05D008306 2.6e-97 359.4 303 60.7
HanXRQChr09g0271821 Helianthus annuus HOM05D006519 ORTHO05D008306 2.6e-97 359.4 276 65.2
Prupe.5G179000 Prunus persica HOM05D006519 ORTHO05D008306 1.7e-96 356.7 274 65.0
FAN13G2537 Fragaria x ananassa HOM05D006519 ORTHO05D008306 2.9e-96 355.9 273 63.7
CsaV3_1G008220 Cucumis sativus L. HOM05D006519 ORTHO05D008306 3.7e-96 355.5 276 64.1
SalBow5G4476 Salvia bowleyana HOM05D006519 ORTHO05D008306 1.1e-95 354.0 331 55.0
FAN08G1114 Fragaria x ananassa HOM05D006519 ORTHO05D008306 1.4e-95 353.6 271 63.5
SalBow5G0752 Salvia bowleyana HOM05D006519 ORTHO05D008306 2.4e-95 352.8 331 54.4
Carub.0008s1012 Capsella rubella HOM05D006519 ORTHO05D008306 4.1e-95 352.1 273 61.5
CARHR258520 Cardamine hirsuta HOM05D006519 ORTHO05D008306 7.0e-95 351.3 286 60.1
Sed0010209 Sechium edule HOM05D006519 ORTHO05D008306 9.2e-95 350.9 277 62.1
AT5G50110 Arabidopsis thaliana HOM05D006519 ORTHO05D008306 5.9e-94 348.2 284 60.2
Lj4g0003537 Lotus japonicus HOM05D006519 ORTHO05D008306 5.9e-94 348.2 275 62.2
MELO3C002238.2 Cucumis melo HOM05D006519 ORTHO05D008306 7.8e-94 347.8 285 62.1
PSO591G0501 Papaver somniferum HOM05D006519 ORTHO05D008306 7.8e-94 347.8 309 57.6
AUR62031043 Chenopodium quinoa HOM05D006519 ORTHO05D008306 1.7e-93 346.7 224 76.8
THA.LOC104809258 Tarenaya hassleriana HOM05D006519 ORTHO05D008306 3.0e-93 345.9 281 60.5
Sp6g11980 Schrenkiella parvula HOM05D006519 ORTHO05D008306 8.6e-93 344.4 275 60.7
TPR.G37507 Trifolium pratense HOM05D006519 ORTHO05D008306 8.6e-93 344.4 268 63.4
Psat0s1227g0160 Pisum sativum HOM05D006519 ORTHO05D008306 1.2e-91 340.5 279 60.6
Medtr4g106410 Medicago truncatula HOM05D006519 ORTHO05D008306 3.6e-91 339.0 277 61.0
Lalb_Chr07g0182571 Lupinus albus HOM05D006519 ORTHO05D008306 1.0e-90 337.4 268 60.4
Aa31sc174G50 Aethionema arabicum HOM05D006519 ORTHO05D008306 2.3e-90 336.3 288 58.0
ClCG01G014120 Citrullus lanatus HOM05D006519 ORTHO05D008306 3.1e-90 335.9 288 59.0
Glyma.05G033800 Glycine max HOM05D006519 ORTHO05D008306 6.8e-90 334.7 268 62.3
A03p27660 Brassica napus HOM05D006519 ORTHO05D008306 2.0e-89 333.2 275 59.6
BraA03t11979Z Brassica rapa HOM05D006519 ORTHO05D008306 2.0e-89 333.2 275 59.6
arahy.Tifrunner.gnm1.ann1.L198ZR Arachis hypogaea HOM05D006519 ORTHO05D008306 5.8e-89 331.6 278 60.1
Atru.chr9.2404 Acer truncatum HOM05D006519 ORTHO05D008306 7.5e-89 331.3 276 60.5
BcaB01g02918 Brassica carinata HOM05D006519 ORTHO05D008306 7.5e-89 331.3 278 58.6
BcaC01g04830 Brassica carinata HOM05D006519 ORTHO05D008306 7.5e-89 331.3 275 60.4
BolC3t15659H Brassica oleracea HOM05D006519 ORTHO05D008306 1.3e-88 330.5 275 60.0
arahy.Tifrunner.gnm1.ann1.IBQC5J Arachis hypogaea HOM05D006519 ORTHO05D008306 1.7e-88 330.1 278 59.4
ATR0314G030 Amborella trichopoda HOM05D006519 ORTHO05D008306 2.9e-88 329.3 247 64.4
C03p33370 Brassica napus HOM05D006519 ORTHO05D008306 8.3e-88 327.8 275 59.6
COL.COLO4_04635 Corchorus olitorius HOM05D006519 ORTHO05D008306 4.1e-87 325.5 235 67.2
Ca_21889_v3 Cicer arietinum L. HOM05D006519 ORTHO05D008306 2.7e-86 322.8 268 59.3
PGR083G2560 Punica granatum HOM05D006519 ORTHO05D008306 2.3e-85 319.7 276 58.7
Peaxi162Scf00017g02523 Petunia axillaris HOM05D006519 ORTHO05D008306 1.1e-84 317.4 210 71.0
SGA_v2.0_scaffold467G52031 Striga asiatica HOM05D006519 ORTHO05D008306 1.5e-84 317.0 248 64.5
Thhalv10014373m.g Eutrema salsugineum HOM05D006519 ORTHO05D008306 1.1e-82 310.8 275 57.5
Rhsim12G0161700 Rhododendron simsii HOM05D006519 ORTHO05D008306 7.5e-81 304.7 273 58.6
Zm00001eb279990 Zea mays HOM05D006519 ORTHO05D008306 7.5e-81 304.7 230 63.5
AL8G24100 Arabidopsis lyrata HOM05D006519 ORTHO05D008306 8.3e-80 301.2 209 66.5
Eucgr.B00339 Eucalyptus grandis HOM05D006519 ORTHO05D008306 7.8e-78 294.7 209 65.6
Mapoly0003s0145 Marchantia polymorpha HOM05D006519 ORTHO05D008306 2.1e-75 286.6 234 59.0
Lj9C454G3 Lonicera japonica HOM05D006519 ORTHO05D008306 5.2e-74 282.0 286 53.5
Phvul.003G197000 Phaseolus vulgaris HOM05D006519 ORTHO05D008306 8.9e-74 281.2 197 67.0
Pp3c21_11830 Physcomitrium patens HOM05D006519 ORTHO05D008306 8.9e-74 281.2 257 54.5
unitig_62.g23572 Utricularia gibba HOM05D006519 ORTHO05D008306 1.7e-72 276.9 243 56.8
SMO236G0037 Selaginella moellendorffii HOM05D006519 ORTHO05D008306 2.1e-67 260.0 226 55.3
vmacro16588 Vaccinium macrocarpon HOM05D006519 ORTHO05D008306 9.3e-63 244.6 174 67.8
Hma1.2p1_0002F.1_g002810 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 1.6e-62 243.8 149 77.2
Manes.06G100700 Manihot esculenta HOM05D006519 ORTHO05D008306 3.3e-60 236.1 192 61.5
MD14G1186100 Malus domestica HOM05D006519 ORTHO05D008306 1.9e-55 220.3 221 53.8
MD14G1186900 Malus domestica HOM05D006519 ORTHO05D008306 3.2e-55 219.5 167 65.9
Hma1.2p1_0002F.1_g002800 Hydrangea macrophylla HOM05D006519 ORTHO05D008306 4.2e-55 219.2 166 64.5
Nitab4.5_0001642g0020 Nicotiana tabacum HOM05D006519 ORTHO05D008306 1.8e-50 203.8 133 69.9
VMungo1215G1861 Vigna mungo HOM05D006519 ORTHO05D008306 2.0e-49 200.3 208 52.4
MD13G1183500 Malus domestica HOM05D006519 ORTHO05D008306 3.8e-48 196.1 167 59.3
AagrBONN_evm.TU.Sc2ySwM_228.2029 Anthoceros agrestis HOM05D006519 ORTHO05D008306 9.3e-47 191.4 182 56.0
MCO15G300 Micromonas commoda HOM05D006519 ORTHO05D008306 6.7e-45 185.3 239 46.9
HPP92_010835 Vanilla planifolia HOM05D006519 ORTHO05D008306 6.7e-45 185.3 165 53.3
Cre09.g394584 Chlamydomonas reinhardtii HOM05D006519 ORTHO05D008306 2.5e-44 183.3 306 37.6
Actinidia19081 Actinidia chinensis HOM05D006519 ORTHO05D008306 1.3e-37 161.0 140 57.1
Cpa.g.sc35.56 Carica papaya HOM05D006519 ORTHO05D008306 2.3e-37 160.2 116 70.7
SEGI_15669 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 2.3e-37 160.2 166 48.8
Nitab4.5_0001642g0010 Nicotiana tabacum HOM05D006519 ORTHO05D008306 3.3e-36 156.4 129 59.7
Glyma.17G093302 Glycine max HOM05D006519 ORTHO05D008306 4.5e-33 146.0 98 68.4
HanXRQChr11g0328331 Helianthus annuus HOM05D006519 ORTHO05D008306 6.1e-30 135.6 102 62.7
Os06g0239000 Oryza sativa ssp. japonica HOM05D006519 ORTHO05D008306 3.3e-28 129.8 101 63.4
arahy.Tifrunner.gnm1.ann1.KZGX7R Arachis hypogaea HOM05D006519 ORTHO05D008306 4.3e-28 129.4 104 57.7
C05p16930 Brassica napus HOM05D006519 ORTHO05D008306 2.2e-27 127.1 97 64.9
CDE06G0478 Ceratophyllum demersum HOM05D006519 ORTHO05D008306 4.8e-27 125.9 83 71.1
arahy.Tifrunner.gnm1.ann1.J4WABN Arachis hypogaea HOM05D006519 ORTHO05D008306 4.1e-26 122.9 97 57.7
arahy.Tifrunner.gnm1.ann1.9L22J7 Arachis hypogaea HOM05D006519 ORTHO05D014446 7.2e-23 112.1 108 53.7
Dinv20697 Davidia involucrata HOM05D006519 ORTHO05D008306 5.7e-20 102.4 124 47.6
PRCOL_00000545 Prasinoderma coloniale HOM05D006519 ORTHO05D008306 3.7e-19 99.8 233 30.5
BcaC05g25762 Brassica carinata HOM05D006519 ORTHO05D008306 2.0e-17 94.0 78 61.5
arahy.Tifrunner.gnm1.ann1.MFZI3Y Arachis hypogaea HOM05D005365 ORTHO05D006910 7.7e-17 92.0 84 52.4
arahy.Tifrunner.gnm1.ann1.4TMU9W Arachis hypogaea HOM05D005365 ORTHO05D006910 9.4e-15 85.1 68 57.4
CBR_g30328 Chara braunii HOM05D000019 ORTHO05D000048 2.1e-14 84.0 96 47.9
arahy.Tifrunner.gnm1.ann1.RNN7F2 Arachis hypogaea HOM05D006519 ORTHO05D008306 3.6e-14 83.2 65 60.0
arahy.Tifrunner.gnm1.ann1.PY279F Arachis hypogaea HOM05D006519 ORTHO05D008306 1.8e-13 80.9 65 63.1
SEGI_16810 Sequoiadendron giganteum HOM05D006519 ORTHO05D008306 3.0e-13 80.1 50 72.0
Potri.015G071001 Populus trichocarpa HOM05D006519 ORTHO05D008306 2.2e-11 73.9 54 59.3


User provided reference genes

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