Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g046120 Amaranthus hybridus HOM05D006272 ORTHO05D007989 1.0e-125 453.4 222 100.0
EL10Ac5g10820 Beta vulgaris HOM05D006272 ORTHO05D007989 5.3e-90 334.7 225 76.9
AUR62031036 Chenopodium quinoa HOM05D006272 ORTHO05D007989 1.6e-86 323.2 210 79.0
AUR62008277 Chenopodium quinoa HOM05D006272 ORTHO05D007989 4.8e-83 311.6 212 75.0
Sc12g0005560 Simmondsia chinensis HOM05D006272 ORTHO05D007989 2.5e-79 299.3 229 68.6
Actinidia19083 Actinidia chinensis HOM05D006272 ORTHO05D007989 4.4e-76 288.5 228 64.9
Cc04_g13100 Coffea canephora HOM05D006272 ORTHO05D007989 9.7e-76 287.3 219 65.3
HanXRQChr16g0503601 Helianthus annuus HOM05D006272 ORTHO05D007989 1.1e-74 283.9 193 70.5
Migut.D01790 Erythranthe guttata HOM05D006272 ORTHO05D007989 7.0e-74 281.2 230 62.2
MSTRG.4383 Avicennia marina HOM05D006272 ORTHO05D007989 2.7e-73 279.3 227 63.0
Manes.14G069600 Manihot esculenta HOM05D006272 ORTHO05D007989 3.5e-73 278.9 234 64.1
Atru.chr9.2416 Acer truncatum HOM05D006272 ORTHO05D007989 7.7e-73 277.7 201 67.2
Prupe.5G178100 Prunus persica HOM05D006272 ORTHO05D007989 1.7e-72 276.6 227 64.3
Rhsim12G0162200 Rhododendron simsii HOM05D006272 ORTHO05D007989 3.8e-72 275.4 229 62.4
CAN.G2099.3 Capsicum annuum HOM05D006272 ORTHO05D007989 5.0e-72 275.0 233 62.2
MD14G1185400 Malus domestica HOM05D006272 ORTHO05D007989 6.5e-72 274.6 225 64.0
Nitab4.5_0006432g0010 Nicotiana tabacum HOM05D006272 ORTHO05D007989 1.5e-71 273.5 202 66.3
GSVIVG01007814001 Vitis vinifera HOM05D006272 ORTHO05D007989 1.5e-71 273.5 199 70.4
MD06G1180000 Malus domestica HOM05D006272 ORTHO05D007989 1.9e-71 273.1 229 63.3
vmacro16592 Vaccinium macrocarpon HOM05D006272 ORTHO05D007989 3.2e-71 272.3 234 62.0
CSS0043549 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.5e-71 271.6 230 60.4
QL10p013391 Quercus lobata HOM05D006272 ORTHO05D007989 7.2e-71 271.2 231 62.3
Haze_07447 Corylus avellana HOM05D006272 ORTHO05D007989 1.2e-70 270.4 185 71.4
COL.COLO4_04328 Corchorus olitorius HOM05D006272 ORTHO05D007989 1.6e-70 270.0 187 71.7
Eucgr.B00343 Eucalyptus grandis HOM05D006272 ORTHO05D007989 2.1e-70 269.6 231 61.9
Gohir.D03G150700 Gossypium hirsutum HOM05D006272 ORTHO05D007989 2.1e-70 269.6 232 62.9
FvH4_5g16490 Fragaria vesca HOM05D006272 ORTHO05D007989 2.7e-70 269.2 229 63.3
Hund09410 Selenicereus undatus HOM05D006272 ORTHO05D007989 2.7e-70 269.2 208 67.8
Oeu041583.1 Olea europaea HOM05D006272 ORTHO05D007989 3.6e-70 268.9 213 63.4
CiPaw.12G023800 Carya illinoinensis HOM05D006272 ORTHO05D007989 6.1e-70 268.1 231 62.8
ECA232G4277 Erigeron canadensis HOM05D006272 ORTHO05D007989 6.1e-70 268.1 199 63.8
Gohir.A03G017300 Gossypium hirsutum HOM05D006272 ORTHO05D007989 6.1e-70 268.1 225 63.6
RcHm_v2.0_Chr7g0179601 Rosa chinensis HOM05D006272 ORTHO05D007989 1.4e-69 266.9 227 63.9
Solyc03g113990.3 Solanum lycopersicum HOM05D006272 ORTHO05D007989 1.4e-69 266.9 225 61.3
Potri.015G072000 Populus trichocarpa HOM05D006272 ORTHO05D007989 1.8e-69 266.5 191 67.5
MD06G1180300 Malus domestica HOM05D006272 ORTHO05D007989 3.0e-69 265.8 237 61.2
Phvul.009G181400 Phaseolus vulgaris HOM05D006272 ORTHO05D007989 3.0e-69 265.8 227 61.2
SGA_v2.0_scaffold114G31850 Striga asiatica HOM05D006272 ORTHO05D007989 5.2e-69 265.0 230 62.2
Ciclev10022132m.g Citrus clementina HOM05D006272 ORTHO05D007989 1.2e-68 263.8 232 61.2
Glyma.06G185200 Glycine max HOM05D006272 ORTHO05D007989 1.5e-68 263.5 171 72.5
Gorai.003G157900 Gossypium raimondii HOM05D006272 ORTHO05D007989 2.0e-68 263.1 221 63.8
PGSC0003DMG400024586 Solanum tuberosum HOM05D006272 ORTHO05D007989 2.6e-68 262.7 228 61.4
Duzib205G0574 Durio zibethinus HOM05D006272 ORTHO05D007989 3.4e-68 262.3 178 72.5
Sopen03g033040 Solanum pennellii HOM05D006272 ORTHO05D007989 5.7e-68 261.5 226 61.1
VMungo1309G0353 Vigna mungo HOM05D006272 ORTHO05D007989 9.8e-68 260.8 191 66.0
Sabra15G0096800 Salix brachista HOM05D006272 ORTHO05D007989 1.3e-67 260.4 190 66.3
CSS0019620 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 3.7e-67 258.8 218 61.0
Ca_16206_v3 Cicer arietinum L. HOM05D006272 ORTHO05D007989 3.7e-67 258.8 185 69.2
Glyma.04G179400 Glycine max HOM05D006272 ORTHO05D007989 6.3e-67 258.1 197 64.0
TPR.G15079 Trifolium pratense HOM05D006272 ORTHO05D007989 6.3e-67 258.1 229 60.3
FAN18G3972 Fragaria x ananassa HOM05D006272 ORTHO05D007989 8.3e-67 257.7 248 58.5
PGR083G1342 Punica granatum HOM05D006272 ORTHO05D007989 1.1e-66 257.3 223 60.5
Thecc.03G005700 Theobroma cacao HOM05D006272 ORTHO05D007989 1.1e-66 257.3 198 66.7
FAN04G2131 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-66 256.9 170 74.1
FAN13G1305 Fragaria x ananassa HOM05D006272 ORTHO05D007989 1.4e-66 256.9 170 74.1
CANSAT80G1784 Cannabis sativa HOM05D006272 ORTHO05D007989 3.1e-66 255.8 233 59.2
THA.LOC104809256 Tarenaya hassleriana HOM05D006272 ORTHO05D007989 1.2e-65 253.8 217 61.3
Medtr3g078320 Medicago truncatula HOM05D006272 ORTHO05D007989 3.5e-65 252.3 171 70.2
Psat5g113800 Pisum sativum HOM05D006272 ORTHO05D007989 3.5e-65 252.3 224 60.7
Lsat_1_v5_gn_4_72700 Lactuca sativa HOM05D006272 ORTHO05D007989 4.5e-65 251.9 211 63.5
Lalb_Chr23g0273081 Lupinus albus HOM05D006272 ORTHO05D007989 5.9e-65 251.5 162 72.8
Thhalv10014644m.g Eutrema salsugineum HOM05D006272 ORTHO05D007989 7.7e-65 251.1 216 60.6
Lj5A121G99 Lonicera japonica HOM05D006272 ORTHO05D007989 7.7e-65 251.1 206 62.1
Lj1g0014498 Lotus japonicus HOM05D006272 ORTHO05D007989 7.7e-65 251.1 172 69.8
AL8G24090 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.3e-64 250.4 217 63.1
Carub.0008s1010 Capsella rubella HOM05D006272 ORTHO05D007989 1.3e-64 250.4 199 64.8
TAR622G0996 Trochodendron aralioides HOM05D006272 ORTHO05D007989 1.3e-64 250.4 215 62.3
Os04g0668800 Oryza sativa ssp. japonica HOM05D006272 ORTHO05D007989 1.7e-64 250.0 143 79.7
ClCG06G016760 Citrullus lanatus HOM05D006272 ORTHO05D007989 3.8e-64 248.8 183 64.5
Zm00001eb433220 Zea mays HOM05D006272 ORTHO05D007989 3.8e-64 248.8 154 75.3
Aa31LG3G6090 Aethionema arabicum HOM05D006272 ORTHO05D007989 5.0e-64 248.4 193 65.8
AT5G50100 Arabidopsis thaliana HOM05D006272 ORTHO05D007989 8.5e-64 247.7 219 61.2
CsaV3_1G001760 Cucumis sativus L. HOM05D006272 ORTHO05D007989 2.5e-63 246.1 170 67.6
Sp6g11960 Schrenkiella parvula HOM05D006272 ORTHO05D007989 3.2e-63 245.7 197 63.5
CDE04G2481 Ceratophyllum demersum HOM05D006272 ORTHO05D006222 5.5e-63 245.0 150 76.7
BcaC04g20846 Brassica carinata HOM05D006272 ORTHO05D007989 9.5e-63 244.2 195 63.6
BolC9t56708H Brassica oleracea HOM05D006272 ORTHO05D007989 9.5e-63 244.2 195 63.6
Peaxi162Scf00017g02427 Petunia axillaris HOM05D006272 ORTHO05D007989 1.2e-62 243.8 227 57.3
BraSC37t46149Z Brassica rapa HOM05D006272 ORTHO05D007989 1.6e-62 243.4 195 63.1
arahy.Tifrunner.gnm1.ann1.I0QXBL Arachis hypogaea HOM05D006272 ORTHO05D007989 3.6e-62 242.3 181 67.4
Nn4g22890 Nelumbo nucifera HOM05D006272 ORTHO05D007524 6.1e-62 241.5 215 59.5
Sed0009129 Sechium edule HOM05D006272 ORTHO05D007989 1.4e-61 240.4 215 56.7
PSO832G1007 Papaver somniferum HOM05D006272 ORTHO05D007989 6.8e-61 238.0 243 53.5
BcaB08g35362 Brassica carinata HOM05D006272 ORTHO05D007989 2.0e-60 236.5 182 65.4
Cfa019077 Carpinus fangiana HOM05D006272 ORTHO05D007989 2.6e-60 236.1 165 69.1
MELO3C017116.2 Cucumis melo HOM05D006272 ORTHO05D007989 4.4e-60 235.3 177 63.3
Aqoxy3G03085 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 6.3e-59 231.5 204 57.8
C09p38510 Brassica napus HOM05D006272 ORTHO05D007989 6.3e-59 231.5 182 64.3
A10p08550 Brassica napus HOM05D006272 ORTHO05D007989 3.1e-58 229.2 182 63.7
Nitab4.5_0001422g0120 Nicotiana tabacum HOM05D006272 ORTHO05D007989 5.4e-58 228.4 200 62.0
DCAR_021559 Daucus carota HOM05D006272 ORTHO05D007989 9.2e-58 227.6 154 70.1
PSO063G7353 Papaver somniferum HOM05D006272 ORTHO05D007989 9.2e-58 227.6 227 54.6
unitig_46.g18473 Utricularia gibba HOM05D004430 ORTHO05D007989 1.6e-57 226.9 182 61.5
FAN08G1485 Fragaria x ananassa HOM05D006272 ORTHO05D007989 4.5e-57 225.3 241 54.4
Aqoxy3G03086 Aquilegia oxysepala HOM05D006272 ORTHO05D007989 3.8e-56 222.2 202 55.9
arahy.Tifrunner.gnm1.ann1.LZB4LR Arachis hypogaea HOM05D006272 ORTHO05D007989 1.9e-55 219.9 206 57.3
Cpa.g.c38966 Carica papaya HOM05D006272 ORTHO05D007989 3.3e-55 219.2 125 80.0
HPP92_028587 Vanilla planifolia HOM05D006272 ORTHO05D007989 9.5e-55 217.6 141 72.3
ATR1149G021 Amborella trichopoda HOM05D006272 ORTHO05D007989 6.8e-53 211.5 142 68.3
TWI15G0925 Tripterygium wilfordii HOM05D006272 ORTHO05D007989 1.8e-50 203.4 176 65.3
CSS0030983 Camellia sinensis var. sinensis HOM05D006272 ORTHO05D007989 5.4e-50 201.8 139 72.7
Mapoly0071s0065 Marchantia polymorpha HOM05D006272 ORTHO05D007989 1.6e-49 200.3 142 63.4
MBI15_g12943_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 1.7e-48 196.8 150 66.0
CBR_g17090 Chara braunii HOM05D006272 ORTHO05D007989 3.3e-47 192.6 148 56.8
Pp3c1_15150 Physcomitrium patens HOM05D006272 ORTHO05D007989 8.0e-46 188.0 130 66.9
CARHR258530 Cardamine hirsuta HOM05D006272 ORTHO05D007989 5.4e-42 175.3 210 49.5
SMO134G0173 Selaginella moellendorffii HOM05D006272 ORTHO05D007989 1.6e-41 173.7 111 70.3
Sed0028033 Sechium edule HOM05D006272 ORTHO05D007989 2.3e-40 169.9 123 65.9
Hma1.2p1_1643F.1_g295250 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.8e-38 162.9 161 57.8
Hma1.2p1_2351F.1_g320495 Hydrangea macrophylla HOM05D006272 ORTHO05D007989 2.8e-38 162.9 161 57.8
SalBow3G0460 Salvia bowleyana HOM05D006272 ORTHO05D007989 8.1e-38 161.4 93 81.7
PRCOL_00006774 Prasinoderma coloniale HOM05D006272 ORTHO05D007989 5.4e-34 148.7 136 50.7
AL8G10070 Arabidopsis lyrata HOM05D006272 ORTHO05D007989 1.0e-32 144.4 93 76.3
Cre03.g145587 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 5.1e-32 142.1 128 50.8
MCO16G260 Micromonas commoda HOM05D006272 ORTHO05D007989 4.3e-31 139.0 128 46.9
Dinv09172 Davidia involucrata HOM05D006272 ORTHO05D007989 1.6e-30 137.1 140 52.9
QL12p034838 Quercus lobata HOM05D006272 ORTHO05D007989 6.4e-27 125.2 74 79.7
Gohir.A03G017120 Gossypium hirsutum HOM05D006272 ORTHO05D007989 1.1e-26 124.4 146 52.1
SalBow3G4540 Salvia bowleyana HOM05D006272 ORTHO05D007989 5.4e-26 122.1 143 50.3
Cpa.g.c35589.1 Carica papaya HOM05D006272 ORTHO05D007989 3.9e-24 115.9 144 48.6
MBI15_g10564_MAGBIO Magnolia biondii HOM05D006272 ORTHO05D007989 5.2e-21 105.5 76 68.4
Cre02.g095077 Chlamydomonas reinhardtii HOM05D006272 ORTHO05D007989 4.6e-17 92.4 139 33.8
PRCOL_00004884 Prasinoderma coloniale HOM05D006272 ORTHO05D030206 4.6e-09 65.9 161 29.8
TPR.G22672 Trifolium pratense HOM05D006272 ORTHO05D007989 6.0e-09 65.5 38 73.7


User provided reference genes

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