Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045950 Amaranthus hybridus HOM05D006141 ORTHO05D007670 1.1e-105 386.7 206 100.0
AUR62004945 Chenopodium quinoa HOM05D006141 ORTHO05D007670 7.6e-75 284.3 224 72.8
AUR62001013 Chenopodium quinoa HOM05D006141 ORTHO05D007670 1.9e-73 279.6 224 71.9
EL10Ac6g14128 Beta vulgaris HOM05D006141 ORTHO05D007670 2.8e-61 239.2 225 64.0
Manes.01G234600 Manihot esculenta HOM05D006141 ORTHO05D007670 8.8e-55 217.6 216 59.7
Atru.chr5.866 Acer truncatum HOM05D006141 ORTHO05D007670 1.3e-53 213.8 226 58.0
Thecc.01G324800 Theobroma cacao HOM05D006141 ORTHO05D007670 1.7e-53 213.4 218 58.3
Cfa004908 Carpinus fangiana HOM05D006141 ORTHO05D007670 4.8e-53 211.8 223 59.6
Gohir.A08G036900 Gossypium hirsutum HOM05D006141 ORTHO05D007670 6.3e-53 211.5 217 58.1
QL12p034897 Quercus lobata HOM05D006141 ORTHO05D007670 1.4e-52 210.3 222 59.0
Duzib138G1179 Durio zibethinus HOM05D006141 ORTHO05D007670 1.8e-52 209.9 218 58.3
Gohir.D08G047500 Gossypium hirsutum HOM05D006141 ORTHO05D007670 4.1e-52 208.8 217 57.1
Sabra14G0083000 Salix brachista HOM05D006141 ORTHO05D007670 1.6e-51 206.8 217 57.1
Gorai.004G046700 Gossypium raimondii HOM05D006141 ORTHO05D007670 2.0e-51 206.5 217 56.7
CANSAT25G1526 Cannabis sativa HOM05D006141 ORTHO05D007670 2.6e-51 206.1 220 56.8
AL5G44810 Arabidopsis lyrata HOM05D006141 ORTHO05D007670 4.5e-51 205.3 220 56.4
Glyma.19G221200 Glycine max HOM05D006141 ORTHO05D007670 5.9e-51 204.9 223 57.0
Potri.014G112900 Populus trichocarpa HOM05D006141 ORTHO05D007670 5.9e-51 204.9 217 57.6
CiPaw.08G082900 Carya illinoinensis HOM05D006141 ORTHO05D007670 7.7e-51 204.5 221 57.9
Sp5g01230 Schrenkiella parvula HOM05D006141 ORTHO05D007670 2.2e-50 203.0 220 55.5
Sopen01g030090 Solanum pennellii HOM05D006141 ORTHO05D007670 2.2e-50 203.0 225 57.3
AT3G62140 Arabidopsis thaliana HOM05D006141 ORTHO05D007670 3.8e-50 202.2 220 55.0
Ciclev10022224m.g Citrus clementina HOM05D006141 ORTHO05D007670 3.8e-50 202.2 217 55.8
Carub.0005s2889 Capsella rubella HOM05D006141 ORTHO05D007670 5.0e-50 201.8 220 55.0
Psat3g016880 Pisum sativum HOM05D006141 ORTHO05D007670 8.5e-50 201.1 218 56.4
Prupe.3G003000 Prunus persica HOM05D006141 ORTHO05D007670 8.5e-50 201.1 224 57.6
Thhalv10006233m.g Eutrema salsugineum HOM05D006141 ORTHO05D007670 1.1e-49 200.7 220 55.0
Glyma.03G224200 Glycine max HOM05D006141 ORTHO05D007670 1.1e-49 200.7 223 56.5
TPR.G2465 Trifolium pratense HOM05D006141 ORTHO05D007670 1.1e-49 200.7 218 56.4
FvH4_1g26260 Fragaria vesca HOM05D006141 ORTHO05D007670 1.5e-49 200.3 216 58.3
FAN19G0972 Fragaria x ananassa HOM05D006141 ORTHO05D007670 1.9e-49 199.9 218 57.8
MD17G1284800 Malus domestica HOM05D006141 ORTHO05D007670 2.5e-49 199.5 222 57.2
Lalb_Chr18g0046401 Lupinus albus HOM05D006141 ORTHO05D007670 3.2e-49 199.1 218 55.0
THA.LOC104817433 Tarenaya hassleriana HOM05D006141 ORTHO05D007670 4.2e-49 198.7 220 56.8
Rhsim01G0000200 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.5e-49 198.4 228 55.3
VMungo1383G2247 Vigna mungo HOM05D006141 ORTHO05D007670 5.5e-49 198.4 223 55.6
FAN23G3136 Fragaria x ananassa HOM05D006141 ORTHO05D007670 9.4e-49 197.6 209 58.4
FAN28G2755 Fragaria x ananassa HOM05D006141 ORTHO05D007670 9.4e-49 197.6 218 57.3
TWI59G0338 Tripterygium wilfordii HOM05D006141 ORTHO05D007670 9.4e-49 197.6 218 56.0
GSVIVG01028253001 Vitis vinifera HOM05D006141 ORTHO05D007670 1.6e-48 196.8 209 56.5
ClCG01G007160 Citrullus lanatus HOM05D006141 ORTHO05D007670 2.1e-48 196.4 219 55.3
Nn4g25355 Nelumbo nucifera HOM05D006141 ORTHO05D007670 3.6e-48 195.7 218 57.3
Phvul.001G218100 Phaseolus vulgaris HOM05D006141 ORTHO05D007670 3.6e-48 195.7 223 55.6
DCAR_012301 Daucus carota HOM05D006141 ORTHO05D007670 6.1e-48 194.9 220 58.2
TAR362G0148 Trochodendron aralioides HOM05D006141 ORTHO05D007670 8.0e-48 194.5 218 56.0
CsaV3_5G018600 Cucumis sativus L. HOM05D006141 ORTHO05D007670 1.4e-47 193.7 219 55.3
Medtr7g110620 Medicago truncatula HOM05D006141 ORTHO05D007670 1.4e-47 193.7 218 54.6
MELO3C005194.2 Cucumis melo HOM05D006141 ORTHO05D007670 2.3e-47 193.0 219 54.8
Migut.D00015 Erythranthe guttata HOM05D006141 ORTHO05D007670 2.3e-47 193.0 217 54.8
Aqoxy2G02498 Aquilegia oxysepala HOM05D006141 ORTHO05D007670 3.0e-47 192.6 218 56.4
COL.COLO4_23134 Corchorus olitorius HOM05D006141 ORTHO05D007670 5.2e-47 191.8 221 56.1
RcHm_v2.0_Chr3g0485921 Rosa chinensis HOM05D006141 ORTHO05D007670 5.2e-47 191.8 224 55.4
Actinidia20966 Actinidia chinensis HOM05D006141 ORTHO05D007670 8.8e-47 191.0 221 57.0
CARHR172480 Cardamine hirsuta HOM05D006141 ORTHO05D007670 8.8e-47 191.0 213 56.3
arahy.Tifrunner.gnm1.ann1.3ZI6V8 Arachis hypogaea HOM05D006141 ORTHO05D007670 1.5e-46 190.3 229 54.6
PGR042G1406 Punica granatum HOM05D006141 ORTHO05D007670 1.5e-46 190.3 208 55.8
arahy.Tifrunner.gnm1.ann1.YFT3VK Arachis hypogaea HOM05D006141 ORTHO05D007670 2.6e-46 189.5 228 54.4
Ca_09244_v3 Cicer arietinum L. HOM05D006141 ORTHO05D007670 2.6e-46 189.5 218 54.6
MBI18_g10378_MAGBIO Magnolia biondii HOM05D006141 ORTHO05D007670 4.4e-46 188.7 219 57.5
C08p37090 Brassica napus HOM05D006141 ORTHO05D007670 5.7e-46 188.3 214 55.6
BolC8t51287H Brassica oleracea HOM05D006141 ORTHO05D007670 5.7e-46 188.3 214 55.6
Solyc01g068150.3 Solanum lycopersicum HOM05D006141 ORTHO05D007670 5.7e-46 188.3 215 55.8
BcaC07g40706 Brassica carinata HOM05D006141 ORTHO05D007670 7.5e-46 188.0 214 55.6
Nitab4.5_0000222g0340 Nicotiana tabacum HOM05D006141 ORTHO05D007670 7.5e-46 188.0 224 54.9
HanXRQChr06g0167971 Helianthus annuus HOM05D006141 ORTHO05D007670 9.7e-46 187.6 219 56.2
arahy.Tifrunner.gnm1.ann1.XETR8R Arachis hypogaea HOM05D006141 ORTHO05D007670 1.7e-45 186.8 235 52.3
Hma1.2p1_0408F.1_g146310 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 1.7e-45 186.8 216 57.4
ECA236G4451 Erigeron canadensis HOM05D006141 ORTHO05D007670 2.2e-45 186.4 214 53.3
C06p28110 Brassica napus HOM05D006141 ORTHO05D007670 2.8e-45 186.0 221 52.9
BolC6t37977H Brassica oleracea HOM05D006141 ORTHO05D007670 2.8e-45 186.0 221 52.9
FAN26G1012 Fragaria x ananassa HOM05D006141 ORTHO05D007670 4.8e-45 185.3 239 52.3
A09p54230 Brassica napus HOM05D006141 ORTHO05D007670 1.8e-44 183.3 214 54.2
BraA09t40835Z Brassica rapa HOM05D006141 ORTHO05D007670 1.8e-44 183.3 214 54.2
MSTRG.21729 Avicennia marina HOM05D006141 ORTHO05D007670 4.1e-44 182.2 218 53.2
CSS0000718 Camellia sinensis var. sinensis HOM05D006141 ORTHO05D007670 4.1e-44 182.2 187 58.8
PSO761G0605 Papaver somniferum HOM05D006141 ORTHO05D007670 7.0e-44 181.4 221 53.4
Aa31LG10G16170 Aethionema arabicum HOM05D006141 ORTHO05D007670 9.1e-44 181.0 216 53.7
Dinv33165 Davidia involucrata HOM05D006141 ORTHO05D007670 9.1e-44 181.0 140 69.3
CDE09G0801 Ceratophyllum demersum HOM05D006141 ORTHO05D007670 1.6e-43 180.3 214 53.3
SalBow6G5482 Salvia bowleyana HOM05D006141 ORTHO05D007670 2.0e-43 179.9 166 62.7
Sed0006054 Sechium edule HOM05D006141 ORTHO05D007670 2.0e-43 179.9 222 51.4
A07p25870 Brassica napus HOM05D006141 ORTHO05D007670 2.7e-43 179.5 221 51.6
PSO210G0852 Papaver somniferum HOM05D006141 ORTHO05D007670 3.5e-43 179.1 221 52.9
SGA_v2.0_scaffold417G51257 Striga asiatica HOM05D006141 ORTHO05D007670 1.0e-42 177.6 220 53.6
ATR0796G189 Amborella trichopoda HOM05D006141 ORTHO05D007670 8.5e-42 174.5 212 53.8
Cpa.g.sc57.10 Carica papaya HOM05D006141 ORTHO05D007670 8.5e-42 174.5 127 74.0
Os01g0321800 Oryza sativa ssp. japonica HOM05D006141 ORTHO05D007670 3.2e-41 172.6 211 53.1
Cc01_g21800 Coffea canephora HOM05D006141 ORTHO05D007670 4.2e-41 172.2 221 52.9
Rhsim01G0080900 Rhododendron simsii HOM05D006141 ORTHO05D007670 7.2e-41 171.4 167 61.1
Hma1.2p1_0408F.1_g146320 Hydrangea macrophylla HOM05D006141 ORTHO05D007670 2.1e-40 169.9 117 76.1
HPP92_018284 Vanilla planifolia HOM05D006141 ORTHO05D007670 4.7e-40 168.7 217 52.1
BcaB02g07358 Brassica carinata HOM05D002572 ORTHO05D002800 1.0e-39 167.5 220 50.0
Peaxi162Scf00309g01021 Petunia axillaris HOM05D006141 ORTHO05D007670 1.4e-39 167.2 225 52.4
SEGI_07518 Sequoiadendron giganteum HOM05D006141 ORTHO05D007670 2.0e-38 163.3 213 48.4
BcaC08g45187 Brassica carinata HOM05D006141 ORTHO05D007670 5.7e-38 161.8 134 63.4
unitig_578.g16642 Utricularia gibba HOM05D006141 ORTHO05D007670 1.3e-37 160.6 176 54.5
Zm00001eb340460 Zea mays HOM05D006141 ORTHO05D007670 1.7e-37 160.2 115 70.4
Lsat_1_v5_gn_8_167241 Lactuca sativa HOM05D006141 ORTHO05D007670 1.4e-36 157.1 207 52.2
CAN.G100.55 Capsicum annuum HOM05D006141 ORTHO05D007670 1.6e-35 153.7 108 76.9
Rhsim01G0085900 Rhododendron simsii HOM05D006141 ORTHO05D007670 5.0e-34 148.7 211 47.4
BcaB02g07360 Brassica carinata HOM05D006141 ORTHO05D007670 5.2e-31 138.7 89 76.4
BraA07t30234Z Brassica rapa HOM05D006141 ORTHO05D007670 4.4e-30 135.6 88 75.0
Lj2A1216T56 Lonicera japonica HOM05D006141 ORTHO05D007670 3.7e-29 132.5 80 81.2
Ciclev10030079m.g Citrus clementina HOM05D006141 ORTHO05D007670 2.9e-26 122.9 161 50.3
Ciclev10030249m.g Citrus clementina HOM05D006141 ORTHO05D007670 3.8e-26 122.5 161 50.9
Rhsim01G0086800 Rhododendron simsii HOM05D006141 ORTHO05D007670 4.7e-24 115.5 228 42.1
Ciclev10030010m.g Citrus clementina HOM05D006141 ORTHO05D007670 6.1e-24 115.2 207 41.5
Pp3c2_35190 Physcomitrium patens HOM05D006141 ORTHO05D007670 5.8e-22 108.6 217 39.2
Lj1g0014608 Lotus japonicus HOM05D006141 ORTHO05D007670 2.0e-19 100.1 216 40.7
SHI33165 Sapria himalayana HOM05D006141 ORTHO05D007670 5.0e-18 95.5 133 45.1
Mapoly0026s0067 Marchantia polymorpha HOM05D006141 ORTHO05D007670 4.3e-17 92.4 214 36.0
Haze_05144 Corylus avellana HOM05D006141 ORTHO05D007670 1.8e-15 87.0 212 35.4
Rhsim01G0082900 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.2e-14 84.3 152 41.4
Rhsim01G0081900 Rhododendron simsii HOM05D006141 ORTHO05D007670 2.4e-12 76.6 46 80.4
FAN03G1225 Fragaria x ananassa HOM05D006141 ORTHO05D007670 4.1e-12 75.9 44 79.5
AagrBONN_evm.TU.Sc2ySwM_368.766 Anthoceros agrestis HOM05D006141 ORTHO05D007670 7.0e-12 75.1 153 39.2
BcaC09g48717 Brassica carinata HOM05D001214 ORTHO05D001029 1.0e-10 71.2 45 75.6
DCAR_012300 Daucus carota HOM05D006141 ORTHO05D007670 8.6e-10 68.2 46 67.4
CBR_g57079 Chara braunii HOM05D006141 ORTHO05D007670 1.2e-08 64.3 156 34.6
Rhsim12G0140700 Rhododendron simsii HOM05D006141 ORTHO05D007670 1.1e-07 61.2 161 41.0
MCO02G477 Micromonas commoda HOM05D006141 ORTHO05D007670 9.9e-06 54.7 97 35.1


User provided reference genes

Program Settings