Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045860 Amaranthus hybridus HOM05D027676 ORTHO05D026460 1.3e-130 469.9 266 100.0
EL10As5g23614 Beta vulgaris HOM05D027676 ORTHO05D026460 9.6e-54 214.5 180 65.6
AUR62024557 Chenopodium quinoa HOM05D027676 ORTHO05D026460 2.1e-53 213.4 162 66.7
AUR62011698 Chenopodium quinoa HOM05D027676 ORTHO05D026460 2.5e-38 163.3 123 67.5
EL10As5g23615 Beta vulgaris HOM05D000036 ORTHO05D000441 2.0e-27 127.1 168 45.2
AUR62011697 Chenopodium quinoa HOM05D000036 ORTHO05D000441 2.6e-27 126.7 168 45.2
AUR62011695 Chenopodium quinoa HOM05D000036 ORTHO05D000441 1.0e-26 124.8 168 42.9
AUR62024554 Chenopodium quinoa HOM05D000036 ORTHO05D000441 1.3e-26 124.4 168 42.9
Ah.11g045890 Amaranthus hybridus HOM05D000036 ORTHO05D000441 2.2e-26 123.6 168 41.7
EL10As5g23617 Beta vulgaris HOM05D000036 ORTHO05D000441 5.0e-26 122.5 168 42.9
AUR62024556 Chenopodium quinoa HOM05D000036 ORTHO05D000441 6.5e-26 122.1 168 44.0
Ah.02g112680 Amaranthus hybridus HOM05D000036 ORTHO05D000441 2.7e-24 116.7 168 41.7
Ah.11g045870 Amaranthus hybridus HOM05D000036 ORTHO05D000441 5.1e-23 112.5 168 42.3
Sc05g0000090 Simmondsia chinensis HOM05D000036 ORTHO05D000441 2.8e-21 106.7 168 38.1
Sc17g0000110 Simmondsia chinensis HOM05D000036 ORTHO05D000441 3.2e-17 93.2 166 35.5
Sc26g0000720 Simmondsia chinensis HOM05D000036 ORTHO05D000441 8.0e-16 88.6 165 35.2
PSO170G1014 Papaver somniferum HOM05D000036 ORTHO05D000441 2.0e-11 73.9 161 34.8
PSO407G0270 Papaver somniferum HOM05D000036 ORTHO05D000441 2.0e-11 73.9 161 34.8
Os04g0458900 Oryza sativa ssp. japonica HOM05D000036 ORTHO05D000441 7.7e-11 72.0 163 35.0
Zm00001eb080860 Zea mays HOM05D000036 ORTHO05D000441 7.7e-11 72.0 163 34.4
TAR624G0531 Trochodendron aralioides HOM05D000036 ORTHO05D002265 1.7e-10 70.9 184 29.9
Atru.chr5.883 Acer truncatum HOM05D000036 ORTHO05D000441 2.2e-10 70.5 164 32.9
Nitab4.5_0000570g0310 Nicotiana tabacum HOM05D000036 ORTHO05D000441 2.2e-10 70.5 181 32.0
Duzib052G0597 Durio zibethinus HOM05D000036 ORTHO05D000441 6.5e-10 68.9 165 33.3
Sp3g09030 Schrenkiella parvula HOM05D000036 ORTHO05D002265 1.9e-09 67.4 173 30.1
Oeu006543.1 Olea europaea HOM05D000036 ORTHO05D000441 2.5e-09 67.0 175 28.6
vmacro18768 Vaccinium macrocarpon HOM05D000036 ORTHO05D002265 5.5e-09 65.9 161 26.7
Potri.003G021600 Populus trichocarpa HOM05D000036 ORTHO05D000441 7.2e-09 65.5 162 31.5
Sabra03G0013500 Salix brachista HOM05D000036 ORTHO05D000441 7.2e-09 65.5 162 30.9
MBI19_g32736_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D000441 9.4e-09 65.1 161 29.8
Thecc.04G288900 Theobroma cacao HOM05D000036 ORTHO05D000441 1.2e-08 64.7 165 32.1
MBI19_g32737_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D000441 1.6e-08 64.3 161 29.8
SHI16571 Sapria himalayana HOM05D000036 ORTHO05D000441 2.1e-08 63.9 163 28.8
QL06p010361 Quercus lobata HOM05D000036 ORTHO05D000441 2.7e-08 63.5 161 29.8
Sabra01G0161400 Salix brachista HOM05D000036 ORTHO05D000441 2.7e-08 63.5 161 31.1
CDE05G3442 Ceratophyllum demersum HOM05D000036 ORTHO05D009440 6.1e-08 62.4 197 25.4
TWI59G0821 Tripterygium wilfordii HOM05D000036 ORTHO05D000441 6.1e-08 62.4 165 28.5
Migut.O00401 Erythranthe guttata HOM05D000036 ORTHO05D000441 8.0e-08 62.0 161 27.3
Nn3g21916 Nelumbo nucifera HOM05D000036 ORTHO05D000441 8.0e-08 62.0 159 27.7
Rhsim08G0244700 Rhododendron simsii HOM05D000036 ORTHO05D002265 8.0e-08 62.0 158 26.6
MELO3C006683.2 Cucumis melo HOM05D000036 ORTHO05D000441 1.0e-07 61.6 164 31.7
MBI19_g26311_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D000441 1.0e-07 61.6 184 29.3
TAR626G1978 Trochodendron aralioides HOM05D000036 ORTHO05D002265 1.0e-07 61.6 174 24.1
CDE05G2652 Ceratophyllum demersum HOM05D000036 ORTHO05D000441 1.4e-07 61.2 161 29.2
Oeu002569.1 Olea europaea HOM05D000036 ORTHO05D000441 1.8e-07 60.8 162 26.5
Oeu006540.1 Olea europaea HOM05D000036 ORTHO05D000441 1.8e-07 60.8 162 27.2
CDE11G0111 Ceratophyllum demersum HOM05D000036 ORTHO05D000441 2.3e-07 60.5 161 29.2
Cc01_g21820 Coffea canephora HOM05D000036 ORTHO05D000441 2.3e-07 60.5 165 28.5
Gohir.D09G237700 Gossypium hirsutum HOM05D000036 ORTHO05D000441 2.3e-07 60.5 161 30.4
Gorai.006G260600 Gossypium raimondii HOM05D000036 ORTHO05D000441 2.3e-07 60.5 161 30.4
Lj5C29T4 Lonicera japonica HOM05D000036 ORTHO05D002265 2.3e-07 60.5 172 27.3
Os03g0300500 Oryza sativa ssp. japonica HOM05D000036 ORTHO05D000441 2.3e-07 60.5 164 28.7
PGSC0003DMG400004627 Solanum tuberosum HOM05D000036 ORTHO05D000441 2.3e-07 60.5 163 28.2
TAR365G1205 Trochodendron aralioides HOM05D000036 ORTHO05D000441 2.3e-07 60.5 161 28.6
CsaV3_3G014870 Cucumis sativus L. HOM05D000036 ORTHO05D000441 3.0e-07 60.1 161 29.2
Prupe.1G123700 Prunus persica HOM05D000036 ORTHO05D000441 3.0e-07 60.1 161 31.7
Aqoxy1G03693 Aquilegia oxysepala HOM05D000036 ORTHO05D000441 4.0e-07 59.7 160 26.9
Cfa015426 Carpinus fangiana HOM05D005204 ORTHO05D006037 4.0e-07 59.7 161 30.4
ClCG05G006250 Citrullus lanatus HOM05D000036 ORTHO05D000441 4.0e-07 59.7 184 27.7
Gohir.A09G236900 Gossypium hirsutum HOM05D000036 ORTHO05D000441 4.0e-07 59.7 161 29.8
Sed0007418 Sechium edule HOM05D000036 ORTHO05D000441 4.0e-07 59.7 161 28.6
Aqoxy6G01933 Aquilegia oxysepala HOM05D000036 ORTHO05D000441 5.2e-07 59.3 159 28.9
Manes.07G013500 Manihot esculenta HOM05D000036 ORTHO05D000441 5.2e-07 59.3 163 28.8
Prupe.1G123500 Prunus persica HOM05D000036 ORTHO05D000441 5.2e-07 59.3 161 31.1
Prupe.1G132300 Prunus persica HOM05D000036 ORTHO05D000441 5.2e-07 59.3 161 31.1
Sed0017524 Sechium edule HOM05D000036 ORTHO05D000441 5.2e-07 59.3 156 26.9
ATR0099G099 Amborella trichopoda HOM05D000036 ORTHO05D002265 6.7e-07 58.9 171 28.1
TWI14G1212 Tripterygium wilfordii HOM05D000036 ORTHO05D000441 8.8e-07 58.5 165 25.5
EL10Ac3g06660 Beta vulgaris HOM05D000036 ORTHO05D000441 1.2e-06 58.2 161 29.8
Peaxi162Scf00065g01216 Petunia axillaris HOM05D000036 ORTHO05D000441 1.2e-06 58.2 163 27.0
Potri.001G209000 Populus trichocarpa HOM05D000036 ORTHO05D000441 1.2e-06 58.2 160 29.4
RcHm_v2.0_Chr4g0423371 Rosa chinensis HOM05D000036 ORTHO05D000441 1.2e-06 58.2 162 29.0
Ciclev10000415m.g Citrus clementina HOM05D000036 ORTHO05D000441 1.5e-06 57.8 161 27.3
COL.COLO4_30869 Corchorus olitorius HOM05D000036 ORTHO05D002265 1.5e-06 57.8 187 26.7
Haze_01166 Corylus avellana HOM05D000036 ORTHO05D000441 1.5e-06 57.8 161 29.8
Gorai.008G137200 Gossypium raimondii HOM05D000036 ORTHO05D000441 1.5e-06 57.8 160 28.1
PSO761G0155 Papaver somniferum HOM05D000036 ORTHO05D000441 1.5e-06 57.8 166 30.1
CSS0004958 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000441 2.0e-06 57.4 130 30.0
CSS0047335 Camellia sinensis var. sinensis HOM05D000036 ORTHO05D000441 2.0e-06 57.4 130 30.0
Thhalv10020407m.g Eutrema salsugineum HOM05D000036 ORTHO05D002265 2.0e-06 57.4 166 26.5
FvH4_6g35820 Fragaria vesca HOM05D000036 ORTHO05D002265 2.0e-06 57.4 173 28.9
FAN09G4552 Fragaria x ananassa HOM05D000036 ORTHO05D002265 2.0e-06 57.4 173 28.9
FAN14G0632 Fragaria x ananassa HOM05D000036 ORTHO05D002265 2.0e-06 57.4 173 28.9
FAN14G2322 Fragaria x ananassa HOM05D000036 ORTHO05D002265 2.0e-06 57.4 173 28.9
Nn6g35732 Nelumbo nucifera HOM05D000036 ORTHO05D002265 2.0e-06 57.4 183 27.3
Nitab4.5_0010155g0010 Nicotiana tabacum HOM05D000036 ORTHO05D000441 2.0e-06 57.4 163 28.8
Duzib133G1532 Durio zibethinus HOM05D000036 ORTHO05D000441 2.6e-06 57.0 161 28.0
PSO210G6288 Papaver somniferum HOM05D000036 ORTHO05D000441 2.6e-06 57.0 161 29.8
Sc19g0005470 Simmondsia chinensis HOM05D000036 ORTHO05D000441 2.6e-06 57.0 166 29.5
Cfa006656 Carpinus fangiana HOM05D000036 ORTHO05D000095 3.3e-06 56.6 162 27.2
Dinv18019 Davidia involucrata HOM05D000036 ORTHO05D000441 3.3e-06 56.6 161 26.7
Gohir.D12G126200 Gossypium hirsutum HOM05D000036 ORTHO05D000441 3.3e-06 56.6 160 28.1
Thecc.01G323800 Theobroma cacao HOM05D000036 ORTHO05D000441 3.3e-06 56.6 160 28.8
GSVIVG01017687001 Vitis vinifera HOM05D000036 ORTHO05D000441 3.3e-06 56.6 185 26.5
ATR0099G059 Amborella trichopoda HOM05D000036 ORTHO05D002265 4.4e-06 56.2 157 25.5
Gohir.A12G122500 Gossypium hirsutum HOM05D000036 ORTHO05D000441 4.4e-06 56.2 160 28.1
BcaB01g05931 Brassica carinata HOM05D000036 ORTHO05D002265 5.7e-06 55.8 165 29.1
C03p02360 Brassica napus HOM05D000036 ORTHO05D002265 5.7e-06 55.8 165 29.1
BolC3t12787H Brassica oleracea HOM05D000036 ORTHO05D002265 5.7e-06 55.8 157 28.7
Nn8g38513 Nelumbo nucifera HOM05D000036 ORTHO05D009440 5.7e-06 55.8 163 27.0
Sed0011393 Sechium edule HOM05D000036 ORTHO05D000441 5.7e-06 55.8 159 26.4
Zm00001eb424030 Zea mays HOM05D000036 ORTHO05D000441 5.7e-06 55.8 163 30.7
Actinidia21349 Actinidia chinensis HOM05D000036 ORTHO05D000441 7.5e-06 55.5 164 25.6
ATR0693G321 Amborella trichopoda HOM05D000036 ORTHO05D000441 7.5e-06 55.5 162 28.4
Cc04_g17050 Coffea canephora HOM05D000281 ORTHO05D009440 7.5e-06 55.5 171 24.6
FAN02G2582 Fragaria x ananassa HOM05D000036 ORTHO05D000095 7.5e-06 55.5 173 28.3
FAN02G4144 Fragaria x ananassa HOM05D000036 ORTHO05D002265 7.5e-06 55.5 173 28.3
FAN05G2733 Fragaria x ananassa HOM05D000036 ORTHO05D002265 7.5e-06 55.5 173 28.3
Hma1.2p1_0090F.1_g045840 Hydrangea macrophylla HOM05D000036 ORTHO05D002265 7.5e-06 55.5 163 28.2
Nn4g26714 Nelumbo nucifera HOM05D000036 ORTHO05D000441 7.5e-06 55.5 187 27.3
QL06p014211 Quercus lobata HOM05D000036 ORTHO05D000441 7.5e-06 55.5 165 27.3
A03p02010 Brassica napus HOM05D000036 ORTHO05D002265 9.7e-06 55.1 157 28.7
BraA03t09570Z Brassica rapa HOM05D000036 ORTHO05D002265 9.7e-06 55.1 157 28.7
FAN07G2630 Fragaria x ananassa HOM05D000036 ORTHO05D000441 9.7e-06 55.1 157 28.0
Hma1.2p1_0229F.1_g097090 Hydrangea macrophylla HOM05D000036 ORTHO05D002265 9.7e-06 55.1 161 24.8
RcHm_v2.0_Chr3g0456331 Rosa chinensis HOM05D000036 ORTHO05D000441 9.7e-06 55.1 169 27.2
HPP92_013033 Vanilla planifolia HOM05D000036 ORTHO05D000441 9.7e-06 55.1 160 25.6


User provided reference genes

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