Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045780 Amaranthus hybridus HOM05D002705 ORTHO05D009765 1.7e-163 579.3 296 100.0
Ah.05g170870 Amaranthus hybridus HOM05D005614 ORTHO05D006759 2.2e-83 313.2 304 59.9
AUR62019050 Chenopodium quinoa HOM05D005614 ORTHO05D006759 3.3e-71 272.7 292 54.8
AUR62027890 Chenopodium quinoa HOM05D005614 ORTHO05D006759 6.9e-69 265.0 292 53.4
Sc21g0001660 Simmondsia chinensis HOM05D002705 ORTHO05D009765 3.3e-39 166.4 278 42.1
QL08p044244 Quercus lobata HOM05D002705 ORTHO05D009765 5.7e-39 165.6 287 36.9
PGSC0003DMG400021284 Solanum tuberosum HOM05D002705 ORTHO05D009765 1.2e-36 157.9 293 35.2
Solyc10g007750.1 Solanum lycopersicum HOM05D002705 ORTHO05D009765 1.6e-36 157.5 289 36.3
Nitab4.5_0002027g0160 Nicotiana tabacum HOM05D002705 ORTHO05D009765 1.3e-35 154.5 292 34.9
Peaxi162Scf00035g00292 Petunia axillaris HOM05D002705 ORTHO05D009765 8.5e-35 151.8 299 33.4
Nn3g20892 Nelumbo nucifera HOM05D002705 ORTHO05D009765 8.0e-33 145.2 234 37.2
Dinv00192 Davidia involucrata HOM05D002705 ORTHO05D009765 4.0e-32 142.9 235 37.0
Ciclev10033364m.g Citrus clementina HOM05D002705 ORTHO05D009765 2.6e-31 140.2 255 34.9
CsaV3_6G038120 Cucumis sativus L. HOM05D002705 ORTHO05D009765 1.3e-30 137.9 289 33.9
TAR627G0723 Trochodendron aralioides HOM05D002705 ORTHO05D009765 1.3e-30 137.9 247 34.4
CSS0039583 Camellia sinensis var. sinensis HOM05D002705 ORTHO05D009765 1.7e-30 137.5 280 33.2
Cpa.g.sc50.86 Carica papaya HOM05D002705 ORTHO05D009765 1.4e-29 134.4 256 33.6
MELO3C014476.2 Cucumis melo HOM05D002705 ORTHO05D009765 1.4e-29 134.4 286 32.5
GSVIVG01020876001 Vitis vinifera HOM05D002705 ORTHO05D009765 5.3e-29 132.5 242 34.7
Nn4g26472 Nelumbo nucifera HOM05D002705 ORTHO05D009765 1.2e-28 131.3 267 31.1
Potri.005G202300 Populus trichocarpa HOM05D002705 ORTHO05D009765 1.2e-28 131.3 258 32.9
Migut.M00492 Erythranthe guttata HOM05D002705 ORTHO05D009765 1.6e-28 131.0 303 34.0
Lalb_Chr03g0031241 Lupinus albus HOM05D002705 ORTHO05D009765 2.0e-28 130.6 284 31.0
ClCG09G022450 Citrullus lanatus HOM05D002705 ORTHO05D009765 4.5e-28 129.4 246 32.9
Ca_12230_v3 Cicer arietinum L. HOM05D002705 ORTHO05D009765 7.7e-28 128.6 282 34.0
THA.LOC104802278 Tarenaya hassleriana HOM05D002705 ORTHO05D009765 7.7e-28 128.6 274 32.1
Duzib264G0970 Durio zibethinus HOM05D002705 ORTHO05D009765 1.0e-27 128.3 258 32.9
Sed0010957 Sechium edule HOM05D002705 ORTHO05D009765 1.7e-27 127.5 255 30.6
TPR.G16998 Trifolium pratense HOM05D002705 ORTHO05D009765 1.7e-27 127.5 293 32.4
Aqoxy1G01839 Aquilegia oxysepala HOM05D002705 ORTHO05D009765 2.2e-27 127.1 294 30.3
arahy.Tifrunner.gnm1.ann1.Y3CUXW Arachis hypogaea HOM05D002705 ORTHO05D009765 5.0e-27 125.9 262 31.3
COL.COLO4_08449 Corchorus olitorius HOM05D000244 ORTHO05D009765 6.5e-27 125.6 249 34.1
Hma1.2p1_0529F.1_g173240 Hydrangea macrophylla HOM05D002705 ORTHO05D009765 3.2e-26 123.2 264 33.3
Rhsim06G0115800 Rhododendron simsii HOM05D002705 ORTHO05D009765 3.2e-26 123.2 306 34.6
arahy.Tifrunner.gnm1.ann1.4LV4GA Arachis hypogaea HOM05D002705 ORTHO05D009765 4.2e-26 122.9 266 30.8
SalBow8G3518 Salvia bowleyana HOM05D002705 ORTHO05D009765 4.2e-26 122.9 269 32.3
Sopen10g003660 Solanum pennellii HOM05D002705 ORTHO05D009765 3.6e-25 119.8 201 34.8
Manes.02G084700 Manihot esculenta HOM05D002705 ORTHO05D009765 1.0e-24 118.2 297 33.7
Atru.chr6.2088 Acer truncatum HOM05D002705 ORTHO05D009765 3.0e-24 116.7 228 32.9
FAN05G3181 Fragaria x ananassa HOM05D002705 ORTHO05D004955 5.2e-24 115.9 290 32.4
Gohir.A05G379200 Gossypium hirsutum HOM05D002705 ORTHO05D009765 5.2e-24 115.9 263 33.5
Lj6g0006663 Lotus japonicus HOM05D002705 ORTHO05D009765 6.8e-24 115.5 291 30.2
Medtr3g048300 Medicago truncatula HOM05D002705 ORTHO05D009765 6.8e-24 115.5 289 30.4
FAN14G4218 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.0e-23 114.0 285 31.9
FvH4_6g38280 Fragaria vesca HOM05D002705 ORTHO05D009765 2.6e-23 113.6 285 31.9
Actinidia06118 Actinidia chinensis HOM05D002705 ORTHO05D009765 4.4e-23 112.8 246 30.9
Prupe.3G173400 Prunus persica HOM05D002705 ORTHO05D009765 4.4e-23 112.8 284 29.9
Gorai.012G041100 Gossypium raimondii HOM05D002705 ORTHO05D009765 5.7e-23 112.5 305 32.5
HanXRQChr01g0007061 Helianthus annuus HOM05D002705 ORTHO05D009765 5.7e-23 112.5 291 30.6
Gohir.D04G036300 Gossypium hirsutum HOM05D002705 ORTHO05D009765 7.5e-23 112.1 305 32.1
Thecc.01G162500 Theobroma cacao HOM05D002705 ORTHO05D009765 1.3e-22 111.3 284 30.6
PSO675G7613 Papaver somniferum HOM05D002705 ORTHO05D009765 1.1e-21 108.2 288 30.2
Sed0024385 Sechium edule HOM05D002705 ORTHO05D009765 1.1e-21 108.2 243 30.9
Aa31LG1G24660 Aethionema arabicum HOM05D000512 ORTHO05D000861 1.8e-21 107.5 272 29.0
FAN09G3459 Fragaria x ananassa HOM05D002705 ORTHO05D009765 2.4e-21 107.1 277 31.0
VMungo0540G0513 Vigna mungo HOM05D002705 ORTHO05D009765 3.1e-21 106.7 288 30.6
Eucgr.K01214 Eucalyptus grandis HOM05D002705 ORTHO05D009765 5.4e-21 105.9 197 35.5
SGA_v2.0_scaffold70G23654 Striga asiatica HOM05D002705 ORTHO05D009765 5.4e-21 105.9 287 28.9
MSTRG.6743 Avicennia marina HOM05D002705 ORTHO05D009765 7.0e-21 105.5 260 28.8
Lsat_1_v5_gn_5_149781 Lactuca sativa HOM05D002705 ORTHO05D009765 7.0e-21 105.5 294 31.3
Phvul.006G032900 Phaseolus vulgaris HOM05D002705 ORTHO05D009765 7.7e-20 102.1 302 27.8
BraA05t19329Z Brassica rapa HOM05D002705 ORTHO05D009765 1.0e-19 101.7 234 28.2
Thhalv10017067m.g Eutrema salsugineum HOM05D002705 ORTHO05D009765 1.0e-19 101.7 234 29.5
A05p03430 Brassica napus HOM05D002705 ORTHO05D009765 3.8e-19 99.8 235 27.7
Glyma.18G107200 Glycine max HOM05D002705 ORTHO05D009765 3.8e-19 99.8 302 28.1
C04p04000 Brassica napus HOM05D002705 ORTHO05D009765 5.0e-19 99.4 239 28.5
DCAR_009797 Daucus carota HOM05D002705 ORTHO05D009765 1.1e-18 98.2 273 27.5
ATR0681G391 Amborella trichopoda HOM05D002705 ORTHO05D009765 1.5e-18 97.8 249 30.1
BcaC02g12424 Brassica carinata HOM05D002705 ORTHO05D009765 7.2e-18 95.5 228 28.9
BolC4t22036H Brassica oleracea HOM05D002705 ORTHO05D009765 7.2e-18 95.5 228 28.9
Sp4g25030 Schrenkiella parvula HOM05D002705 ORTHO05D009765 3.6e-17 93.2 261 28.4
AT2G42900 Arabidopsis thaliana HOM05D002705 ORTHO05D009765 1.4e-16 91.3 265 29.1
Psat5g181640 Pisum sativum HOM05D002705 ORTHO05D009765 1.8e-16 90.9 243 33.3
CARHR137970 Cardamine hirsuta HOM05D002705 ORTHO05D009765 4.0e-16 89.7 265 28.3
MBI10_g34778_MAGBIO Magnolia biondii HOM05D002705 ORTHO05D009765 4.0e-16 89.7 174 34.5
FAN02G0759 Fragaria x ananassa HOM05D002705 ORTHO05D009765 8.8e-16 88.6 206 33.5
Sabra05G0153700 Salix brachista HOM05D002705 ORTHO05D009765 2.0e-15 87.4 226 28.3
Carub.0004s2537 Capsella rubella HOM05D002705 ORTHO05D009765 2.8e-14 83.6 266 27.8
TWI59G0299 Tripterygium wilfordii HOM05D002705 ORTHO05D009765 1.8e-13 80.9 171 28.1
Os05g0582000 Oryza sativa ssp. japonica HOM05D002705 ORTHO05D009765 9.2e-13 78.6 250 26.0
PSO017G2465 Papaver somniferum HOM05D002705 ORTHO05D009765 1.7e-11 74.3 276 26.8
TAR627G0068 Trochodendron aralioides HOM05D002705 ORTHO05D009765 2.9e-11 73.6 122 34.4
CDE09G0375 Ceratophyllum demersum HOM05D002705 ORTHO05D009765 2.5e-10 70.5 235 23.8
SalBow5G4254 Salvia bowleyana HOM05D002705 ORTHO05D009765 4.3e-10 69.7 325 24.6
RcHm_v2.0_Chr2g0151591 Rosa chinensis HOM05D002705 ORTHO05D009765 3.0e-08 63.5 181 30.4
AL4G41540 Arabidopsis lyrata HOM05D002705 ORTHO05D009765 1.2e-07 61.6 174 27.6
ECA248G0079 Erigeron canadensis HOM05D002705 ORTHO05D009765 2.0e-07 60.8 120 32.5
CAN.G1546.3 Capsicum annuum HOM05D000541 ORTHO05D000137 9.8e-07 58.5 94 36.2
unitig_62.g23106 Utricularia gibba HOM05D002705 ORTHO05D009765 2.2e-06 57.4 179 29.6


User provided reference genes

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