Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045620 Amaranthus hybridus HOM05D005273 ORTHO05D006195 2.0e-200 702.2 346 100.0
EL10Ac3g07435 Beta vulgaris HOM05D005273 ORTHO05D006195 4.3e-179 631.3 360 87.2
AUR62012902 Chenopodium quinoa HOM05D005273 ORTHO05D006195 9.5e-179 630.2 344 87.8
AUR62011776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.1e-178 629.0 393 80.4
Hund09652 Selenicereus undatus HOM05D005273 ORTHO05D006195 3.5e-173 611.7 344 85.2
Gohir.A11G060000 Gossypium hirsutum HOM05D005273 ORTHO05D006195 6.2e-170 600.9 343 82.2
GSVIVG01020564001 Vitis vinifera HOM05D005273 ORTHO05D006195 1.1e-169 600.1 344 82.8
Hma1.2p1_0002F.1_g002020 Hydrangea macrophylla HOM05D005273 ORTHO05D006195 1.8e-169 599.4 344 82.0
Sc21g0002980 Simmondsia chinensis HOM05D005273 ORTHO05D006195 4.0e-169 598.2 346 81.8
Gorai.007G069300 Gossypium raimondii HOM05D005273 ORTHO05D006195 1.5e-168 596.3 343 81.3
CANSAT64G2205 Cannabis sativa HOM05D005273 ORTHO05D006195 2.0e-168 595.9 344 81.7
Nn1g06518 Nelumbo nucifera HOM05D005273 ORTHO05D006195 2.6e-168 595.5 344 81.4
Prupe.3G131200 Prunus persica HOM05D005273 ORTHO05D006195 2.6e-168 595.5 345 81.2
Sabra07G0113000 Salix brachista HOM05D005273 ORTHO05D006195 2.6e-168 595.5 344 80.8
Gohir.D11G064100 Gossypium hirsutum HOM05D005273 ORTHO05D006195 4.4e-168 594.7 343 81.0
Potri.007G139700 Populus trichocarpa HOM05D005273 ORTHO05D006195 9.9e-168 593.6 344 80.5
PGSC0003DMG400028417 Solanum tuberosum HOM05D005273 ORTHO05D006195 9.9e-168 593.6 344 80.2
MD09G1233100 Malus domestica HOM05D005273 ORTHO05D006195 1.7e-167 592.8 344 80.8
FvH4_6g26410 Fragaria vesca HOM05D005273 ORTHO05D006195 2.9e-167 592.0 344 80.2
Solyc02g072105.1 Solanum lycopersicum HOM05D005273 ORTHO05D006195 2.9e-167 592.0 344 80.5
FAN05G3218 Fragaria x ananassa HOM05D005273 ORTHO05D006195 3.8e-167 591.7 344 80.2
Manes.02G045100 Manihot esculenta HOM05D005273 ORTHO05D006195 1.1e-166 590.1 344 81.7
Sopen02g021070 Solanum pennellii HOM05D005273 ORTHO05D006195 1.1e-166 590.1 344 80.2
PGR142G4354 Punica granatum HOM05D005273 ORTHO05D006195 1.4e-166 589.7 343 80.8
CSS0011944 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.2e-166 588.6 344 81.1
CSS0048709 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 3.2e-166 588.6 344 81.1
Duzib264G0403 Durio zibethinus HOM05D005273 ORTHO05D006195 5.4e-166 587.8 345 81.4
CAN.G411.45 Capsicum annuum HOM05D005273 ORTHO05D006195 7.1e-166 587.4 344 80.2
Atru.chr6.2972 Acer truncatum HOM05D005273 ORTHO05D006195 9.3e-166 587.0 344 79.9
ClCG10G015250 Citrullus lanatus HOM05D005273 ORTHO05D006195 9.3e-166 587.0 345 79.4
CANSAT64G2383 Cannabis sativa HOM05D005273 ORTHO05D006195 1.6e-165 586.3 344 79.9
Migut.D02068 Erythranthe guttata HOM05D005273 ORTHO05D006195 1.6e-165 586.3 343 80.5
Ciclev10015816m.g Citrus clementina HOM05D005273 ORTHO05D006195 2.1e-165 585.9 344 80.2
MSTRG.21306 Avicennia marina HOM05D005273 ORTHO05D006195 3.5e-165 585.1 344 79.4
A03p53890 Brassica napus HOM05D005273 ORTHO05D006195 4.6e-165 584.7 345 80.0
BraA03t14458Z Brassica rapa HOM05D005273 ORTHO05D006195 4.6e-165 584.7 345 80.0
Thhalv10025474m.g Eutrema salsugineum HOM05D005273 ORTHO05D006195 4.6e-165 584.7 345 80.3
RcHm_v2.0_Chr2g0127911 Rosa chinensis HOM05D005273 ORTHO05D006195 4.6e-165 584.7 344 79.4
QL08p039365 Quercus lobata HOM05D005273 ORTHO05D006195 7.8e-165 583.9 345 79.1
Sed0018091 Sechium edule HOM05D005273 ORTHO05D006195 7.8e-165 583.9 345 79.4
BolC7t45723H Brassica oleracea HOM05D005273 ORTHO05D006195 1.3e-164 583.2 345 79.7
Sabra07G0117800 Salix brachista HOM05D005273 ORTHO05D006195 1.3e-164 583.2 361 76.7
SalBow1G1167 Salvia bowleyana HOM05D005273 ORTHO05D006195 1.7e-164 582.8 344 80.8
PSO782G4868 Papaver somniferum HOM05D005273 ORTHO05D006195 5.1e-164 581.3 345 80.0
CDE08G0645 Ceratophyllum demersum HOM05D005273 ORTHO05D006195 6.6e-164 580.9 344 78.8
CsaV3_3G041260 Cucumis sativus L. HOM05D005273 ORTHO05D006195 6.6e-164 580.9 345 79.4
Glyma.12G114500 Glycine max HOM05D005273 ORTHO05D006195 8.7e-164 580.5 342 79.2
CARHR229970 Cardamine hirsuta HOM05D005273 ORTHO05D006195 1.1e-163 580.1 344 79.4
Duzib147G0196 Durio zibethinus HOM05D005273 ORTHO05D006195 1.1e-163 580.1 345 80.0
PSO478G2492 Papaver somniferum HOM05D005273 ORTHO05D006195 1.5e-163 579.7 345 79.7
DCAR_013064 Daucus carota HOM05D005273 ORTHO05D006195 1.9e-163 579.3 343 77.3
AT4G22930 Arabidopsis thaliana HOM05D005273 ORTHO05D006195 2.5e-163 578.9 343 79.0
C07p52300 Brassica napus HOM05D005273 ORTHO05D006195 2.5e-163 578.9 345 79.1
Nn1g04120 Nelumbo nucifera HOM05D005273 ORTHO05D006195 2.5e-163 578.9 343 79.6
THA.LOC104823543 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.5e-163 578.9 342 79.5
BcaNung01659 Brassica carinata HOM05D005273 ORTHO05D006195 3.3e-163 578.6 343 79.6
VMungo1127G0137 Vigna mungo HOM05D005273 ORTHO05D006195 4.3e-163 578.2 342 78.7
TWI59G0041 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 5.6e-163 577.8 345 78.8
AL7G30590 Arabidopsis lyrata HOM05D005273 ORTHO05D006195 7.3e-163 577.4 343 79.3
arahy.Tifrunner.gnm1.ann1.EEV1KR Arachis hypogaea HOM05D005273 ORTHO05D006195 7.3e-163 577.4 344 78.2
Carub.0007s1834 Capsella rubella HOM05D005273 ORTHO05D006195 7.3e-163 577.4 344 79.1
Sp7g21020 Schrenkiella parvula HOM05D005273 ORTHO05D006195 7.3e-163 577.4 345 78.8
ATR0737G119 Amborella trichopoda HOM05D005273 ORTHO05D006195 9.6e-163 577.0 344 79.1
A01p14180 Brassica napus HOM05D005273 ORTHO05D006195 9.6e-163 577.0 345 78.6
Carub.0001s3611 Capsella rubella HOM05D005273 ORTHO05D006195 9.6e-163 577.0 343 79.0
arahy.Tifrunner.gnm1.ann1.RDE8QD Arachis hypogaea HOM05D005273 ORTHO05D006195 1.3e-162 576.6 344 77.9
COL.COLO4_33584 Corchorus olitorius HOM05D005273 ORTHO05D006195 1.3e-162 576.6 343 78.1
Phvul.011G119600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 1.6e-162 576.2 342 78.7
BraA01t01367Z Brassica rapa HOM05D005273 ORTHO05D006195 2.1e-162 575.9 345 78.3
MELO3C009854.2 Cucumis melo HOM05D005273 ORTHO05D006195 2.8e-162 575.5 354 77.1
Lsat_1_v5_gn_4_66761 Lactuca sativa HOM05D005273 ORTHO05D006195 3.6e-162 575.1 345 77.7
SalBow1G7481 Salvia bowleyana HOM05D005273 ORTHO05D006195 4.8e-162 574.7 344 80.2
arahy.Tifrunner.gnm1.ann1.891C6J Arachis hypogaea HOM05D005273 ORTHO05D006195 6.2e-162 574.3 344 77.6
Glyma.06G291600 Glycine max HOM05D005273 ORTHO05D006195 1.4e-161 573.2 342 77.5
Aqoxy6G00048 Aquilegia oxysepala HOM05D005273 ORTHO05D006195 1.8e-161 572.8 344 79.1
Lalb_Chr03g0027211 Lupinus albus HOM05D005273 ORTHO05D006195 1.8e-161 572.8 344 77.0
THA.LOC104814179 Tarenaya hassleriana HOM05D005273 ORTHO05D006195 2.4e-161 572.4 342 79.2
Aa31LG2G13370 Aethionema arabicum HOM05D005273 ORTHO05D006195 3.1e-161 572.0 343 78.4
ECA246G2010 Erigeron canadensis HOM05D005273 ORTHO05D006195 2.6e-160 568.9 344 78.8
Cc06_g20460 Coffea canephora HOM05D005273 ORTHO05D006195 4.5e-160 568.2 344 78.2
Haze_12807 Corylus avellana HOM05D005273 ORTHO05D006195 4.5e-160 568.2 357 76.2
Phvul.010G107600 Phaseolus vulgaris HOM05D005273 ORTHO05D006195 5.8e-160 567.8 342 78.1
arahy.Tifrunner.gnm1.ann1.YR7R6W Arachis hypogaea HOM05D005273 ORTHO05D006195 7.6e-160 567.4 340 77.6
Os01g0747500 Oryza sativa ssp. japonica HOM05D005273 ORTHO05D006195 1.3e-159 566.6 343 78.1
Ca_18943_v3 Cicer arietinum L. HOM05D005273 ORTHO05D006195 1.7e-159 566.2 342 76.6
Eucgr.K01040 Eucalyptus grandis HOM05D005273 ORTHO05D006195 2.2e-159 565.8 343 77.6
Medtr4g078370 Medicago truncatula HOM05D005273 ORTHO05D006195 2.9e-159 565.5 342 76.0
Psat7g169200 Pisum sativum HOM05D005273 ORTHO05D006195 6.4e-159 564.3 342 75.7
HanXRQChr15g0466031 Helianthus annuus HOM05D005273 ORTHO05D006195 8.4e-159 563.9 343 75.8
Lj3g0011026 Lotus japonicus HOM05D005273 ORTHO05D006195 5.4e-158 561.2 342 77.2
HPP92_004898 Vanilla planifolia HOM05D005273 ORTHO05D006195 3.5e-157 558.5 344 76.7
SGA_v2.0_scaffold25G10971 Striga asiatica HOM05D005273 ORTHO05D006195 2.3e-156 555.8 353 77.1
unitig_899.g15313 Utricularia gibba HOM05D005273 ORTHO05D006195 3.9e-156 555.1 346 76.3
CiPaw.04G127500 Carya illinoinensis HOM05D005273 ORTHO05D006195 1.1e-155 553.5 318 82.1
TAR627G0042 Trochodendron aralioides HOM05D005273 ORTHO05D006195 1.3e-154 550.1 361 74.8
TWI18G0085 Tripterygium wilfordii HOM05D005273 ORTHO05D006195 1.1e-153 547.0 345 75.9
vmacro12316 Vaccinium macrocarpon HOM05D005273 ORTHO05D006195 2.4e-153 545.8 433 63.7
Zm00001eb153030 Zea mays HOM05D005273 ORTHO05D006195 7.6e-152 540.8 343 74.9
Rhsim06G0140600 Rhododendron simsii HOM05D005273 ORTHO05D006195 4.6e-149 531.6 446 61.0
C01p17440 Brassica napus HOM05D000022 ORTHO05D006195 3.7e-146 521.9 351 72.6
BcaC09g51057 Brassica carinata HOM05D000022 ORTHO05D006195 8.2e-146 520.8 357 71.4
SHI10390 Sapria himalayana HOM05D005273 ORTHO05D006195 1.4e-145 520.0 341 72.1
Lj5g0005541 Lotus japonicus HOM05D005273 ORTHO05D006195 1.8e-140 503.1 305 77.4
SMO347G0496 Selaginella moellendorffii HOM05D005273 ORTHO05D006195 5.1e-140 501.5 341 69.8
Dinv04937 Davidia involucrata HOM05D005273 ORTHO05D006195 3.3e-139 498.8 344 71.5
Mapoly0001s0029 Marchantia polymorpha HOM05D005273 ORTHO05D006195 1.6e-138 496.5 339 69.0
Pp3c13_8930 Physcomitrium patens HOM05D005273 ORTHO05D006195 4.8e-138 495.0 339 69.6
Cpa.g.sc83.46 Carica papaya HOM05D005273 ORTHO05D006195 7.6e-136 487.6 342 69.3
AUR62024621 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.9e-134 483.0 257 90.7
AUR62011723 Chenopodium quinoa HOM05D005273 ORTHO05D006195 8.8e-132 474.2 258 88.4
CBR_g21229 Chara braunii HOM05D005273 ORTHO05D006195 4.1e-129 465.3 326 67.5
Thecc.01G150900 Theobroma cacao HOM05D005273 ORTHO05D006195 2.9e-127 459.1 274 79.6
MBI07_g30188_MAGBIO Magnolia biondii HOM05D005273 ORTHO05D006195 6.5e-127 458.0 344 66.9
Cre11.g467550 Chlamydomonas reinhardtii HOM05D005273 ORTHO05D006195 5.5e-118 428.3 339 61.9
Nitab4.5_0000437g0040 Nicotiana tabacum HOM05D005273 ORTHO05D006195 7.2e-118 427.9 312 68.6
Nitab4.5_0006070g0020 Nicotiana tabacum HOM05D005273 ORTHO05D006195 1.2e-117 427.2 312 68.3
Cfa014627 Carpinus fangiana HOM05D005273 ORTHO05D006195 7.7e-112 407.9 384 56.5
MCO16G183 Micromonas commoda HOM05D005273 ORTHO05D006195 8.8e-108 394.4 340 55.9
BolC1t01684H Brassica oleracea HOM05D005273 ORTHO05D006195 7.5e-107 391.3 234 76.5
Thecc.K0007100 Theobroma cacao HOM05D005273 ORTHO05D006195 4.8e-106 388.7 228 81.6
CSS0013056 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 6.5e-103 378.3 312 62.2
AagrBONN_evm.TU.Sc2ySwM_117.50 Anthoceros agrestis HOM05D005273 ORTHO05D006195 1.5e-102 377.1 245 74.3
Haze_27262 Corylus avellana HOM05D005273 ORTHO05D006195 1.1e-97 360.9 339 53.1
CSS0022573 Camellia sinensis var. sinensis HOM05D005273 ORTHO05D006195 7.0e-97 358.2 346 55.8
PRCOL_00003989 Prasinoderma coloniale HOM05D005273 ORTHO05D006195 6.1e-93 345.1 344 52.0
Lj1C718T2 Lonicera japonica HOM05D005273 ORTHO05D006195 6.6e-87 325.1 190 81.1
QL08p039454 Quercus lobata HOM05D005273 ORTHO05D006195 8.6e-87 324.7 254 64.2
FAN02G4311 Fragaria x ananassa HOM05D005273 ORTHO05D006195 7.3e-86 321.6 189 80.4
Actinidia11084 Actinidia chinensis HOM05D005273 ORTHO05D006195 1.2e-75 287.7 173 76.9
Atru.chr6.2977 Acer truncatum HOM05D005273 ORTHO05D006195 5.4e-73 278.9 219 64.8
SEGI_10566 Sequoiadendron giganteum HOM05D005273 ORTHO05D006195 1.2e-61 241.1 157 72.0
Peaxi162Scf00112g00113 Petunia axillaris HOM05D005273 ORTHO05D006195 2.2e-58 230.3 134 82.1
Peaxi162Scf00112g00110 Petunia axillaris HOM05D005273 ORTHO05D006195 5.4e-49 199.1 115 76.5
Lj1A718G26 Lonicera japonica HOM05D005273 ORTHO05D006195 5.1e-47 192.6 114 76.3
Oeu007130.1 Olea europaea HOM05D005273 ORTHO05D006195 1.6e-45 187.6 344 35.8
EL10Ac9g21222 Beta vulgaris HOM05D005273 ORTHO05D006195 3.8e-42 176.4 257 45.9
TPR.G7356 Trifolium pratense HOM05D005273 ORTHO05D006195 6.7e-39 165.6 94 84.0
Atru.chr6.2976 Acer truncatum HOM05D005273 ORTHO05D006195 1.1e-38 164.9 99 76.8
Cfa022577 Carpinus fangiana HOM05D005273 ORTHO05D006195 4.5e-35 152.9 357 31.7
BcaNung01011 Brassica carinata HOM05D005273 ORTHO05D006195 6.0e-24 115.9 255 35.3
Lj3g0005703 Lotus japonicus HOM05D002777 ORTHO05D001516 3.9e-23 113.2 79 72.2
AUR62036776 Chenopodium quinoa HOM05D005273 ORTHO05D006195 1.1e-22 111.7 171 43.9
AUR62041872 Chenopodium quinoa HOM05D005273 ORTHO05D006195 2.5e-22 110.5 95 61.1
Lalb_Chr09g0333161 Lupinus albus HOM05D005273 ORTHO05D006195 4.2e-17 93.2 87 55.2
TPR.G31736 Trifolium pratense HOM05D005273 ORTHO05D006195 5.3e-12 76.3 45 77.8
Lj5A796T26 Lonicera japonica HOM05D005273 ORTHO05D006195 1.7e-10 71.2 37 83.8


User provided reference genes

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