Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045510 Amaranthus hybridus HOM05D003325 ORTHO05D003852 1.4e-101 372.9 174 100.0
AUR62029583 Chenopodium quinoa HOM05D003325 ORTHO05D003852 1.8e-64 249.6 171 66.7
AUR62038854 Chenopodium quinoa HOM05D003325 ORTHO05D003852 2.0e-60 236.1 175 62.9
Hund10145 Selenicereus undatus HOM05D003325 ORTHO05D003852 6.1e-57 224.6 164 62.2
MD14G1155200 Malus domestica HOM05D003325 ORTHO05D003852 4.8e-46 188.3 177 53.7
COL.COLO4_07120 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.8e-45 186.4 190 48.9
Sc10g0010520 Simmondsia chinensis HOM05D003325 ORTHO05D003852 9.1e-45 184.1 160 53.1
Hma1.2p1_0014F.1_g009260 Hydrangea macrophylla HOM05D003325 ORTHO05D003852 5.9e-44 181.4 183 46.4
MD06G1139200 Malus domestica HOM05D003325 ORTHO05D003852 5.9e-44 181.4 183 50.3
QL10p002570 Quercus lobata HOM05D003325 ORTHO05D003852 5.9e-44 181.4 163 54.6
Ciclev10031319m.g Citrus clementina HOM05D003325 ORTHO05D003852 1.0e-43 180.6 180 47.2
Prupe.5G149200 Prunus persica HOM05D003325 ORTHO05D003852 5.0e-43 178.3 172 51.2
FAN04G0895 Fragaria x ananassa HOM05D003325 ORTHO05D003852 8.5e-43 177.6 162 53.7
Atru.chr6.1822 Acer truncatum HOM05D003325 ORTHO05D003852 1.5e-42 176.8 182 49.5
FAN18G4277 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.5e-42 176.8 162 53.1
vmacro19124 Vaccinium macrocarpon HOM05D003325 ORTHO05D003852 1.5e-42 176.8 192 47.9
CiPaw.11G005500 Carya illinoinensis HOM05D003325 ORTHO05D003852 4.2e-42 175.3 184 47.8
Gohir.D03G113900 Gossypium hirsutum HOM05D003325 ORTHO05D003852 5.5e-42 174.9 189 47.6
Nn4g22275 Nelumbo nucifera HOM05D003325 ORTHO05D003852 7.2e-42 174.5 182 50.5
CSS0012678 Camellia sinensis var. sinensis HOM05D003325 ORTHO05D003852 9.4e-42 174.1 171 52.0
Manes.06G120800 Manihot esculenta HOM05D003325 ORTHO05D003852 9.4e-42 174.1 182 51.6
FvH4_5g08560 Fragaria vesca HOM05D003325 ORTHO05D003852 1.2e-41 173.7 162 52.5
Rhsim08G0191500 Rhododendron simsii HOM05D003325 ORTHO05D003852 1.2e-41 173.7 187 49.7
TAR622G0641 Trochodendron aralioides HOM05D003325 ORTHO05D003852 2.1e-41 172.9 180 49.4
Actinidia25563 Actinidia chinensis HOM05D003325 ORTHO05D003852 2.7e-41 172.6 183 49.2
Gorai.003G120100 Gossypium raimondii HOM05D003325 ORTHO05D003852 2.7e-41 172.6 189 47.1
GSVIVG01008557001 Vitis vinifera HOM05D003325 ORTHO05D003852 2.7e-41 172.6 185 47.6
Aa31LG1G18420 Aethionema arabicum HOM05D003325 ORTHO05D003852 4.7e-41 171.8 173 52.0
FAN13G2783 Fragaria x ananassa HOM05D003325 ORTHO05D003852 4.7e-41 171.8 162 52.5
Gohir.A03G053200 Gossypium hirsutum HOM05D003325 ORTHO05D003852 4.7e-41 171.8 189 46.0
Duzib205G1086 Durio zibethinus HOM05D003325 ORTHO05D003852 8.0e-41 171.0 194 46.4
Sabra12G0073800 Salix brachista HOM05D003325 ORTHO05D003852 8.0e-41 171.0 191 45.5
Potri.012G100500 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.4e-40 170.2 178 48.9
Potri.015G098700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.8e-40 169.9 185 45.9
Cfa018776 Carpinus fangiana HOM05D003325 ORTHO05D003852 3.0e-40 169.1 181 47.5
TWI14G0714 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 4.0e-40 168.7 180 47.2
Duzib068G1443 Durio zibethinus HOM05D003325 ORTHO05D003852 6.7e-40 167.9 183 48.1
RcHm_v2.0_Chr7g0189831 Rosa chinensis HOM05D003325 ORTHO05D003852 2.6e-39 166.0 172 50.0
Haze_07162 Corylus avellana HOM05D003325 ORTHO05D003852 4.4e-39 165.2 161 51.6
QL10p002524 Quercus lobata HOM05D003325 ORTHO05D003852 4.4e-39 165.2 183 46.4
Lj5A94T50 Lonicera japonica HOM05D003325 ORTHO05D003852 7.5e-39 164.5 176 47.2
PGR083G0510 Punica granatum HOM05D003325 ORTHO05D003852 9.7e-39 164.1 189 43.4
Sp2g26610 Schrenkiella parvula HOM05D003325 ORTHO05D003852 9.7e-39 164.1 172 49.4
Potri.004G005700 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.7e-38 163.3 177 48.0
Thecc.03G131500 Theobroma cacao HOM05D003325 ORTHO05D003852 2.2e-38 162.9 189 46.0
Eucgr.B00098 Eucalyptus grandis HOM05D003325 ORTHO05D003852 6.3e-38 161.4 186 45.7
Potri.011G010200 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.1e-37 159.1 181 45.3
CAN.G676.19 Capsicum annuum HOM05D003325 ORTHO05D003852 5.3e-37 158.3 183 44.3
Ca_16056_v3 Cicer arietinum L. HOM05D003325 ORTHO05D003852 1.2e-36 157.1 181 45.3
Eucgr.B00095 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.0e-36 156.4 186 45.2
Cpa.g.sc13.92 Carica papaya HOM05D003325 ORTHO05D003852 2.7e-36 156.0 183 45.4
Eucgr.L01506 Eucalyptus grandis HOM05D003325 ORTHO05D003852 2.7e-36 156.0 186 45.7
BcaB07g29692 Brassica carinata HOM05D003325 ORTHO05D003852 3.5e-36 155.6 173 49.1
HanXRQChr13g0407901 Helianthus annuus HOM05D003325 ORTHO05D003852 3.5e-36 155.6 174 46.0
Lalb_Chr08g0237261 Lupinus albus HOM05D003325 ORTHO05D003852 3.5e-36 155.6 175 46.9
ECA247G1358 Erigeron canadensis HOM05D003325 ORTHO05D003852 4.5e-36 155.2 168 47.6
Medtr3g099090 Medicago truncatula HOM05D003325 ORTHO05D003852 5.9e-36 154.8 177 47.5
TAR622G0196 Trochodendron aralioides HOM05D003325 ORTHO05D003852 5.9e-36 154.8 180 46.7
VMungo1309G3084 Vigna mungo HOM05D003325 ORTHO05D003852 1.3e-35 153.7 182 45.6
Solyc04g016130.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.7e-35 153.3 181 43.6
Sopen04g008200 Solanum pennellii HOM05D003325 ORTHO05D003852 1.7e-35 153.3 181 43.6
Lj1g0000526 Lotus japonicus HOM05D003325 ORTHO05D003852 3.8e-35 152.1 182 44.0
CARHR277380 Cardamine hirsuta HOM05D003325 ORTHO05D003852 5.0e-35 151.8 173 47.4
BcaC03g18211 Brassica carinata HOM05D003325 ORTHO05D003852 6.5e-35 151.4 173 46.8
C02p62780 Brassica napus HOM05D003325 ORTHO05D003852 6.5e-35 151.4 173 46.8
BolC2t12350H Brassica oleracea HOM05D003325 ORTHO05D003852 6.5e-35 151.4 173 46.8
Cc01_g02380 Coffea canephora HOM05D003325 ORTHO05D003852 8.5e-35 151.0 178 42.7
Glyma.06G168700 Glycine max HOM05D003325 ORTHO05D003852 8.5e-35 151.0 181 45.3
MSTRG.11269 Avicennia marina HOM05D003325 ORTHO05D003852 1.1e-34 150.6 180 43.3
BraA02t09207Z Brassica rapa HOM05D003325 ORTHO05D003852 1.5e-34 150.2 173 46.8
Nitab4.5_0000636g0090 Nicotiana tabacum HOM05D003325 ORTHO05D003852 1.5e-34 150.2 185 42.7
Phvul.009G165200 Phaseolus vulgaris HOM05D003325 ORTHO05D003852 1.9e-34 149.8 181 43.6
A02p42850 Brassica napus HOM05D003325 ORTHO05D003852 5.5e-34 148.3 173 46.2
Migut.I00547 Erythranthe guttata HOM05D003325 ORTHO05D003852 7.2e-34 147.9 180 41.7
Glyma.04G196900 Glycine max HOM05D003325 ORTHO05D003852 7.2e-34 147.9 181 44.2
Nitab4.5_0012330g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 7.2e-34 147.9 184 42.4
MBI11_g22691_MAGBIO Magnolia biondii HOM05D003325 ORTHO05D003852 9.4e-34 147.5 167 46.7
Thhalv10004048m.g Eutrema salsugineum HOM05D003325 ORTHO05D003852 1.2e-33 147.1 170 47.1
Psat5g052120 Pisum sativum HOM05D003325 ORTHO05D003852 1.2e-33 147.1 176 43.2
AT5G63520 Arabidopsis thaliana HOM05D003325 ORTHO05D003852 2.7e-33 146.0 166 46.4
CANSAT80G2651 Cannabis sativa HOM05D003325 ORTHO05D003852 2.7e-33 146.0 178 42.7
CANSAT80G0326 Cannabis sativa HOM05D003325 ORTHO05D003852 3.6e-33 145.6 178 42.7
Potri.011G010100 Populus trichocarpa HOM05D003325 ORTHO05D003852 3.6e-33 145.6 182 42.3
Eucgr.F00440 Eucalyptus grandis HOM05D003325 ORTHO05D003852 4.7e-33 145.2 187 44.4
MD06G1139800 Malus domestica HOM05D003325 ORTHO05D003852 4.7e-33 145.2 143 50.3
THA.LOC104798940 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 4.7e-33 145.2 172 46.5
Lsat_1_v5_gn_1_33020 Lactuca sativa HOM05D003325 ORTHO05D003852 6.1e-33 144.8 146 50.7
Oeu061142.1 Olea europaea HOM05D003325 ORTHO05D003852 6.1e-33 144.8 177 40.7
Oeu061143.2 Olea europaea HOM05D003325 ORTHO05D003852 1.0e-32 144.1 181 40.9
SGA_v2.0_scaffold383G50423 Striga asiatica HOM05D003325 ORTHO05D003852 1.4e-32 143.7 164 44.5
Carub.0008s2425 Capsella rubella HOM05D003325 ORTHO05D003852 3.0e-32 142.5 166 45.2
AL8G40600 Arabidopsis lyrata HOM05D003325 ORTHO05D003852 5.2e-32 141.7 166 45.8
Lj1g0016208 Lotus japonicus HOM05D003325 ORTHO05D003852 8.8e-32 141.0 179 43.0
HanXRQChr10g0317761 Helianthus annuus HOM05D003325 ORTHO05D003852 5.7e-31 138.3 180 40.6
QL10p002543 Quercus lobata HOM05D003325 ORTHO05D003852 5.7e-31 138.3 174 40.8
HanXRQChr13g0407891 Helianthus annuus HOM05D003325 ORTHO05D003852 7.5e-31 137.9 180 40.6
Sopen10g030630 Solanum pennellii HOM05D003325 ORTHO05D003852 3.7e-30 135.6 175 41.7
Solyc10g080020.3 Solanum lycopersicum HOM05D003325 ORTHO05D003852 6.3e-30 134.8 176 42.0
arahy.Tifrunner.gnm1.ann1.C4UAPE Arachis hypogaea HOM05D003325 ORTHO05D003852 3.1e-29 132.5 145 47.6
Nitab4.5_0007721g0020 Nicotiana tabacum HOM05D003325 ORTHO05D003852 3.1e-29 132.5 157 42.0
Peaxi162Scf00130g00520 Petunia axillaris HOM05D003325 ORTHO05D003852 3.1e-29 132.5 150 42.7
PGSC0003DMG400023730 Solanum tuberosum HOM05D003325 ORTHO05D003852 3.1e-29 132.5 183 41.5
arahy.Tifrunner.gnm1.ann1.XMC2I2 Arachis hypogaea HOM05D003325 ORTHO05D003852 4.1e-29 132.1 134 50.0
Manes.06G120900 Manihot esculenta HOM05D003325 ORTHO05D003852 4.1e-29 132.1 176 40.3
PGSC0003DMG400038085 Solanum tuberosum HOM05D003325 ORTHO05D003852 5.4e-29 131.7 188 37.8
Potri.012G100600 Populus trichocarpa HOM05D003325 ORTHO05D003852 7.0e-29 131.3 182 41.2
Potri.015G098800 Populus trichocarpa HOM05D003325 ORTHO05D003852 1.2e-28 130.6 185 41.1
TPR.G27817 Trifolium pratense HOM05D003325 ORTHO05D003852 3.5e-28 129.0 168 41.1
Prupe.5G149100 Prunus persica HOM05D003325 ORTHO05D003852 4.5e-28 128.6 170 41.2
HanXRQChr13g0408791 Helianthus annuus HOM05D003325 ORTHO05D003852 5.9e-28 128.3 168 39.9
Solyc04g016160.4 Solanum lycopersicum HOM05D003325 ORTHO05D003852 1.0e-27 127.5 187 38.5
Sopen04g008210 Solanum pennellii HOM05D003325 ORTHO05D003852 1.0e-27 127.5 187 38.5
PGSC0003DMG400027287 Solanum tuberosum HOM05D003325 ORTHO05D003852 1.3e-27 127.1 187 37.4
ATR0561G074 Amborella trichopoda HOM05D003325 ORTHO05D003852 2.9e-27 125.9 179 40.8
DCAR_016380 Daucus carota HOM05D003325 ORTHO05D003852 1.1e-26 124.0 179 38.0
SalBow5G0035 Salvia bowleyana HOM05D003325 ORTHO05D003852 7.2e-26 121.3 147 42.2
HanXRQChr13g0407851 Helianthus annuus HOM05D003325 ORTHO05D003852 1.6e-25 120.2 170 42.4
HanXRQChr13g0408751 Helianthus annuus HOM05D003325 ORTHO05D003852 2.8e-25 119.4 165 38.2
Gohir.D03G113600 Gossypium hirsutum HOM05D003325 ORTHO05D003852 8.0e-25 117.9 179 39.7
Gorai.003G119900 Gossypium raimondii HOM05D003325 ORTHO05D003852 8.0e-25 117.9 179 39.7
TWI39G0380 Tripterygium wilfordii HOM05D003325 ORTHO05D003852 1.4e-24 117.1 165 38.8
Gohir.A03G053300 Gossypium hirsutum HOM05D003325 ORTHO05D003852 1.8e-24 116.7 178 39.9
DCAR_021633 Daucus carota HOM05D003325 ORTHO05D003852 2.3e-24 116.3 186 38.2
Sabra12G0073900 Salix brachista HOM05D003325 ORTHO05D003852 3.0e-24 115.9 182 37.9
HanXRQChr02g0034341 Helianthus annuus HOM05D003325 ORTHO05D003852 5.2e-24 115.2 172 40.7
MD14G1155100 Malus domestica HOM05D003325 ORTHO05D003852 5.2e-24 115.2 175 36.0
Thecc.03G131600 Theobroma cacao HOM05D003325 ORTHO05D003852 5.2e-24 115.2 190 37.4
THA.LOC104798939 Tarenaya hassleriana HOM05D003325 ORTHO05D003852 6.8e-24 114.8 178 37.6
Sed0021268 Sechium edule HOM05D003325 ORTHO05D003852 1.2e-23 114.0 174 37.9
Cpa.g.sc4.169 Carica papaya HOM05D003325 ORTHO05D003852 1.5e-23 113.6 197 34.0
Duzib084G0716 Durio zibethinus HOM05D003325 ORTHO05D003852 2.6e-23 112.8 178 37.1
HanXRQChr01g0000031 Helianthus annuus HOM05D003325 ORTHO05D003852 7.5e-23 111.3 172 39.0
HanXRQChr02g0034321 Helianthus annuus HOM05D003325 ORTHO05D003852 1.3e-22 110.5 168 36.3
DCAR_021629 Daucus carota HOM05D003325 ORTHO05D003852 3.7e-22 109.0 186 37.1
HanXRQChr13g0408771 Helianthus annuus HOM05D003325 ORTHO05D003852 8.3e-22 107.8 163 38.0
DCAR_021631 Daucus carota HOM05D003325 ORTHO05D003852 1.1e-21 107.5 186 36.6
HanXRQChr13g0408781 Helianthus annuus HOM05D003325 ORTHO05D003852 3.1e-21 105.9 165 37.6
HanXRQChr13g0408811 Helianthus annuus HOM05D003325 ORTHO05D003852 1.2e-20 104.0 164 38.4
COL.COLO4_07119 Corchorus olitorius HOM05D003325 ORTHO05D003852 1.5e-18 97.1 192 30.7
SEGI_07717 Sequoiadendron giganteum HOM05D003325 ORTHO05D003852 1.5e-18 97.1 153 37.9
Sabra15G0119600 Salix brachista HOM05D003325 ORTHO05D003852 9.5e-18 94.4 117 40.2
Aqoxy5G03311 Aquilegia oxysepala HOM05D003325 ORTHO05D003852 2.1e-17 93.2 108 44.4
Ciclev10033680m.g Citrus clementina HOM05D003325 ORTHO05D003852 4.7e-17 92.0 188 34.0
HanXRQChr00c0029g0571191 Helianthus annuus HOM05D003325 ORTHO05D003852 4.7e-17 92.0 181 32.6
BcaB02g09754 Brassica carinata HOM05D003325 ORTHO05D003852 5.2e-16 88.6 179 31.8
HanXRQChr02g0034311 Helianthus annuus HOM05D003325 ORTHO05D003852 5.2e-16 88.6 132 34.8
A06p30150 Brassica napus HOM05D003325 ORTHO05D003852 8.9e-16 87.8 183 31.1
BraA06t25966Z Brassica rapa HOM05D003325 ORTHO05D003852 8.9e-16 87.8 183 31.1
BolC3t18546H Brassica oleracea HOM05D003325 ORTHO05D003852 3.4e-15 85.9 179 30.7
HanXRQChr04g0099661 Helianthus annuus HOM05D003325 ORTHO05D003852 3.4e-15 85.9 104 40.4
MD06G1139000 Malus domestica HOM05D003325 ORTHO05D003852 5.8e-15 85.1 139 34.5
FAN04G2439 Fragaria x ananassa HOM05D003325 ORTHO05D003852 1.7e-14 83.6 167 32.9
HanXRQChr04g0099631 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-14 83.2 131 37.4
HanXRQChr04g0099641 Helianthus annuus HOM05D003325 ORTHO05D003852 2.2e-14 83.2 139 37.4
Solyc04g016150.2 Solanum lycopersicum HOM05D003325 ORTHO05D003852 4.1e-13 79.0 111 36.0
FvH4_5g08570 Fragaria vesca HOM05D003325 ORTHO05D003852 1.2e-12 77.4 167 31.1
FAN18G2108 Fragaria x ananassa HOM05D003325 ORTHO05D003852 2.7e-12 76.3 167 30.5
ATR0561G214 Amborella trichopoda HOM05D003325 ORTHO05D003852 7.8e-12 74.7 108 40.7
CDE06G2031 Ceratophyllum demersum HOM05D003325 ORTHO05D003852 1.0e-11 74.3 99 41.4
Migut.N02143 Erythranthe guttata HOM05D003325 ORTHO05D003852 1.2e-07 60.8 107 36.4
A02p42810 Brassica napus HOM05D003325 ORTHO05D003852 9.8e-07 57.8 70 45.7


User provided reference genes

Program Settings