Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 1.2e-59 233.4 163 100.0
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 1.5e-49 199.9 175 74.9
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 3.2e-44 182.2 169 69.2
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 8.0e-43 177.6 101 88.1
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 3.0e-42 175.6 102 85.3
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 5.9e-30 134.8 113 67.3
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 1.0e-29 134.0 118 61.0
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 2.3e-29 132.9 125 58.4
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 1.1e-28 130.6 111 67.6
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 1.5e-28 130.2 126 57.9
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 3.3e-28 129.0 109 67.0
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 7.2e-28 127.9 114 63.2
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 7.2e-28 127.9 111 65.8
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-27 127.1 116 62.1
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 1.2e-27 127.1 113 63.7
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.2e-27 127.1 116 62.1
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 1.2e-27 127.1 113 63.7
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 1.2e-27 127.1 114 63.2
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 2.8e-27 125.9 114 64.9
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 4.7e-27 125.2 113 62.8
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 6.1e-27 124.8 114 62.3
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 6.1e-27 124.8 114 62.3
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 6.1e-27 124.8 114 62.3
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 1.4e-26 123.6 116 60.3
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 4.0e-26 122.1 96 68.8
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.2e-25 120.6 116 57.8
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.2e-25 120.6 116 57.8
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.4e-25 118.6 116 56.9
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.7e-24 116.7 112 60.7
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.7e-24 116.7 124 54.8
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 2.2e-24 116.3 116 56.0
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.8e-24 115.9 124 54.8
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 2.7e-22 109.4 102 59.8
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 4.5e-22 108.6 111 57.7
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 7.8e-22 107.8 101 61.4
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 7.8e-22 107.8 125 54.4
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 1.0e-21 107.5 109 55.0
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 8.6e-21 104.4 124 50.0
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.5e-20 103.6 109 55.0
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 1.9e-20 103.2 127 53.5
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.9e-20 103.2 120 51.7
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.9e-20 103.2 116 51.7
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 2.5e-20 102.8 113 54.9
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 3.3e-20 102.4 110 54.5
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 3.6e-19 99.0 105 59.0
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 4.7e-19 98.6 123 49.6
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 4.7e-19 98.6 110 53.6
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 1.0e-18 97.4 126 50.0
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 4.0e-18 95.5 139 47.5
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 1.5e-17 93.6 109 51.4
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 2.0e-17 93.2 88 59.1
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.6e-17 92.8 133 45.9
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 3.7e-16 89.0 126 46.8
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 4.9e-16 88.6 122 47.5
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.4e-16 88.2 110 50.9
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 6.4e-16 88.2 110 50.9
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.4e-16 88.2 110 50.9
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 1.1e-15 87.4 68 70.6
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 1.1e-15 87.4 126 46.8
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 2.4e-15 86.3 127 44.9
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 3.2e-15 85.9 93 54.8
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 4.1e-15 85.5 111 49.5
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 7.0e-15 84.7 130 45.4
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 9.2e-15 84.3 126 43.7
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 1.2e-14 84.0 113 51.3
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 1.6e-14 83.6 116 48.3
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 2.7e-14 82.8 182 37.4
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 2.7e-14 82.8 148 42.6
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 3.5e-14 82.4 126 45.2
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 3.5e-14 82.4 125 44.8
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 3.5e-14 82.4 127 42.5
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 3.5e-14 82.4 126 42.1
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 4.6e-14 82.0 109 47.7
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.0e-13 80.9 113 47.8
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 1.0e-13 80.9 110 49.1
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 1.0e-13 80.9 120 45.0
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 1.3e-13 80.5 128 43.8
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 1.3e-13 80.5 111 48.6
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 1.3e-13 80.5 127 42.5
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 2.3e-13 79.7 126 42.1
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 3.0e-13 79.3 182 36.3
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 3.0e-13 79.3 134 44.0
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 3.9e-13 79.0 130 42.3
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 5.0e-13 78.6 70 68.6
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 6.6e-13 78.2 130 43.1
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 8.6e-13 77.8 135 43.7
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.5e-12 77.0 125 41.6
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 1.5e-12 77.0 130 43.8
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.9e-12 76.6 110 47.3
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 1.9e-12 76.6 124 46.0
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 2.5e-12 76.3 126 42.1
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 4.3e-12 75.5 125 42.4
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 5.6e-12 75.1 126 40.5
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 5.6e-12 75.1 126 40.5
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 5.6e-12 75.1 127 40.9
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 9.5e-12 74.3 130 42.3
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 9.5e-12 74.3 135 40.0
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 9.5e-12 74.3 126 39.7
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 1.6e-11 73.6 101 45.5
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 2.1e-11 73.2 134 39.6
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 2.1e-11 73.2 127 40.9
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.1e-11 73.2 102 47.1
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.1e-11 73.2 110 46.4
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 2.8e-11 72.8 89 51.7
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 3.6e-11 72.4 121 40.5
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 4.7e-11 72.0 89 51.7
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 8.0e-11 71.2 119 43.7
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 1.1e-10 70.9 194 32.0
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.1e-10 70.9 137 38.7
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 1.4e-10 70.5 129 38.0
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 1.4e-10 70.5 123 39.8
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 1.4e-10 70.5 135 39.3
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 1.4e-10 70.5 123 42.3
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 1.8e-10 70.1 67 61.2
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.8e-10 70.1 133 39.8
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 2.3e-10 69.7 94 45.7
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 2.3e-10 69.7 119 42.9
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 2.3e-10 69.7 89 50.6
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.1e-10 69.3 131 39.7
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 6.8e-10 68.2 125 40.0
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 6.8e-10 68.2 88 46.6
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 8.9e-10 67.8 116 42.2
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.2e-09 67.4 146 37.0
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 3.4e-09 65.9 104 43.3
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.8e-09 65.1 131 38.2
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 7.5e-09 64.7 125 38.4
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 9.8e-09 64.3 78 46.2
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 1.3e-08 63.9 133 37.6
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 1.7e-08 63.5 82 42.7
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 2.9e-08 62.8 73 46.6
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 3.7e-08 62.4 127 38.6
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 3.7e-08 62.4 127 38.6
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 6.4e-08 61.6 81 44.4
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 8.3e-08 61.2 95 37.9
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 1.1e-07 60.8 124 34.7
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 2.4e-07 59.7 112 35.7
SGA_v2.0_scaffold72G24100 Striga asiatica HOM05D000179 ORTHO05D000107 2.4e-07 59.7 110 39.1
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 3.2e-07 59.3 99 36.4
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 5.4e-07 58.5 78 42.3
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 5.4e-07 58.5 79 41.8
CiPaw.05G159500 Carya illinoinensis HOM05D000179 ORTHO05D000107 7.1e-07 58.2 84 42.9
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 9.2e-07 57.8 121 36.4
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 2.1e-06 56.6 115 37.4
unitig_8.g4035 Utricularia gibba HOM05D005335 ORTHO05D006472 2.1e-06 56.6 121 39.7
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 2.7e-06 56.2 82 41.5
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 3.5e-06 55.8 102 39.2


User provided reference genes

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