Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 2.7e-112 408.7 204 100.0
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 2.3e-100 369.0 203 86.7
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 9.2e-97 357.1 203 83.7
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.2e-93 346.7 206 82.0
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 4.9e-82 308.1 198 72.2
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 6.4e-82 307.8 198 72.2
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 3.2e-81 305.4 198 67.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 3.2e-81 305.4 198 71.2
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 1.6e-80 303.1 198 70.7
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 2.1e-80 302.8 256 60.2
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 6.0e-80 301.2 198 71.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 6.0e-80 301.2 198 71.7
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 69.7
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 69.7
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 69.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.3e-79 300.1 198 71.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 3.0e-79 298.9 198 68.2
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 5.1e-79 298.1 200 68.5
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 6.6e-79 297.7 198 67.7
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.1e-78 297.0 198 68.2
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.5e-78 296.6 198 69.2
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 68.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 70.7
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 2.5e-78 295.8 198 68.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 3.3e-78 295.4 198 68.2
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 3.3e-78 295.4 198 68.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 5.6e-78 294.7 200 71.0
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 7.3e-78 294.3 198 68.2
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 9.6e-78 293.9 198 68.2
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 9.6e-78 293.9 198 69.2
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 68.2
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 67.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.7e-77 291.6 198 68.2
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 4.7e-77 291.6 198 68.2
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.2e-77 291.2 198 68.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 6.2e-77 291.2 198 68.2
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 6.2e-77 291.2 198 68.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 8.1e-77 290.8 198 67.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 1.1e-76 290.4 198 68.7
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.4e-76 289.3 198 67.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 2.4e-76 289.3 199 67.8
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 2.4e-76 289.3 198 67.7
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 4.0e-76 288.5 198 67.2
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 8.9e-76 287.3 198 67.2
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.2e-75 287.0 198 66.7
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.5e-75 286.6 207 66.7
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 68.7
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 2.0e-75 286.2 198 63.6
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 2.0e-75 286.2 198 63.6
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 3.4e-75 285.4 199 63.8
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.4e-75 285.4 198 67.7
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 3.4e-75 285.4 198 64.1
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 4.4e-75 285.0 198 65.2
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 5.8e-75 284.6 198 65.7
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 5.8e-75 284.6 198 65.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 5.8e-75 284.6 198 68.2
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 7.6e-75 284.3 198 66.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 9.9e-75 283.9 198 64.6
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 1.7e-74 283.1 206 65.0
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.2e-74 282.7 198 64.1
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 3.8e-74 282.0 198 64.1
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 4.9e-74 281.6 198 63.6
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 4.9e-74 281.6 198 64.1
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 4.9e-74 281.6 198 65.2
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 8.4e-74 280.8 199 66.3
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 1.1e-73 280.4 198 62.6
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 1.4e-73 280.0 203 63.1
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.9e-73 279.6 198 65.2
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-73 279.6 198 63.1
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.9e-73 279.6 198 64.6
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 4.2e-73 278.5 198 63.1
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 4.2e-73 278.5 199 65.3
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 5.4e-73 278.1 234 57.7
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 7.1e-73 277.7 198 63.1
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 7.1e-73 277.7 234 57.3
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 7.1e-73 277.7 198 62.6
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 2.7e-72 275.8 198 62.6
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 3.5e-72 275.4 202 62.9
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 3.5e-72 275.4 233 57.1
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 4.6e-72 275.0 198 63.6
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 4.6e-72 275.0 198 61.6
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 4.6e-72 275.0 198 62.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 4.6e-72 275.0 241 55.6
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 6.0e-72 274.6 198 62.6
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 1.7e-71 273.1 198 61.1
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 2.3e-71 272.7 236 56.4
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 6.6e-71 271.2 198 61.6
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 8.7e-71 270.8 216 59.3
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.1e-70 270.4 219 57.1
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.5e-70 269.2 216 57.4
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 4.3e-70 268.5 173 70.5
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 1.3e-69 266.9 198 60.6
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 6.2e-69 264.6 170 70.0
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 2.4e-68 262.7 198 60.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.0e-68 261.9 198 60.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 6.9e-68 261.2 176 69.3
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 1.2e-67 260.4 199 60.8
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.7e-66 256.5 188 63.8
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 6.0e-64 248.1 171 64.9
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.1e-62 243.8 191 58.6
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-62 243.4 180 60.0
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 5.6e-62 241.5 170 63.5
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 6.2e-61 238.0 198 56.6
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 4.5e-59 231.9 198 56.1
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 7.6e-59 231.1 161 65.2
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 2.9e-58 229.2 198 54.0
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 7.1e-57 224.6 154 65.6
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 9.3e-57 224.2 198 55.6
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 6.7e-55 218.0 198 49.5
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 1.1e-54 217.2 198 50.5
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 3.3e-54 215.7 201 50.2
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 3.3e-54 215.7 167 61.7
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 3.8e-50 202.2 145 60.7
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 3.8e-50 202.2 195 48.7
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 4.2e-49 198.7 135 68.1
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.5e-43 180.3 132 57.6
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 3.4e-43 179.1 143 60.8
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 2.9e-42 176.0 118 61.0
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 3.8e-42 175.6 160 49.4
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.1e-41 174.1 130 64.6
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 2.7e-40 169.5 130 56.9
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 2.7e-40 169.5 186 48.4
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 1.3e-39 167.2 120 58.3
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 4.3e-38 162.2 115 65.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 4.8e-37 158.7 146 50.7
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 3.8e-34 149.1 143 49.0
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.9e-33 146.7 110 63.6
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.6e-32 142.5 115 51.3
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 4.6e-32 142.1 115 51.3
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 2.4e-28 129.8 124 51.6
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 5.9e-27 125.2 81 74.1
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 5.9e-27 125.2 92 53.3
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 5.5e-25 118.6 77 74.0
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 4.7e-24 115.5 143 38.5
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 6.1e-24 115.2 77 75.3
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 8.8e-23 111.3 77 71.4
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 2.2e-21 106.7 77 67.5
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 2.2e-21 106.7 77 67.5
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 3.7e-21 105.9 83 63.9
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 4.8e-21 105.5 77 67.5
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 1.4e-20 104.0 94 55.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.8e-20 103.6 77 66.2
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 7.0e-20 101.7 77 63.6
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 4.5e-19 99.0 73 58.9
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 7.7e-19 98.2 57 70.2
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 1.0e-18 97.8 74 63.5
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 5.0e-18 95.5 69 66.7
MCO15G520 Micromonas commoda HOM05D004322 ORTHO05D005033 8.5e-18 94.7 186 30.1
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.5e-17 94.0 99 43.4
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 4.2e-17 92.4 72 63.9
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 9.4e-17 91.3 55 67.3
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 3.6e-16 89.4 145 40.0
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 1.0e-15 87.8 191 25.7
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-14 84.0 65 61.5
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 3.7e-13 79.3 64 59.4
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 1.1e-12 77.8 56 50.0
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 7.0e-12 75.1 119 35.3
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 3.5e-11 72.8 63 42.9
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 1.5e-09 67.4 46 69.6
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.9e-09 67.0 53 60.4
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 2.5e-09 66.6 56 48.2
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 2.5e-09 66.6 60 50.0
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 1.2e-08 64.3 56 46.4
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 6.8e-07 58.5 51 49.0
VMungo0540G1689 Vigna mungo HOM05D004322 ORTHO05D005033 7.5e-06 55.1 196 29.6


User provided reference genes

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