Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045050 Amaranthus hybridus HOM05D005260 ORTHO05D006390 9.6e-206 719.9 363 100.0
EL10Ac8g18850 Beta vulgaris HOM05D005260 ORTHO05D006390 4.7e-128 461.8 380 66.3
Sc18g0000130 Simmondsia chinensis HOM05D005260 ORTHO05D006390 2.4e-116 422.9 384 62.0
AUR62031434 Chenopodium quinoa HOM05D005260 ORTHO05D006390 6.6e-114 414.8 312 70.8
TAR625G1225 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.1e-108 397.5 383 59.3
TAR383G0874 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.1e-105 387.5 385 56.6
Hma1.2p1_0028F.1_g017400 Hydrangea macrophylla HOM05D005260 ORTHO05D006390 1.2e-104 384.0 388 57.5
CSS0012073 Camellia sinensis var. sinensis HOM05D005260 ORTHO05D006390 8.1e-104 381.3 388 57.7
CiPaw.15G174600 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.4e-103 380.6 377 57.3
Peaxi162Scf00347g00088 Petunia axillaris HOM05D005260 ORTHO05D006390 2.0e-102 376.7 398 54.3
Sopen07g001450 Solanum pennellii HOM05D005260 ORTHO05D006390 3.4e-102 375.9 394 55.3
Lalb_Chr13g0300941 Lupinus albus HOM05D005260 ORTHO05D006390 4.4e-102 375.6 376 56.1
Nitab4.5_0008157g0020 Nicotiana tabacum HOM05D005260 ORTHO05D006390 4.4e-102 375.6 399 55.4
CAN.G1116.9 Capsicum annuum HOM05D005260 ORTHO05D006390 5.8e-102 375.2 390 54.6
Solyc07g005340.2 Solanum lycopersicum HOM05D005260 ORTHO05D006390 5.8e-102 375.2 394 55.3
ATR0739G050 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.2e-101 373.2 389 54.0
PGR102G1636 Punica granatum HOM05D005260 ORTHO05D006390 2.2e-101 373.2 371 55.8
Ca_21113_v3 Cicer arietinum L. HOM05D005260 ORTHO05D006390 2.9e-101 372.9 369 57.7
Lsat_1_v5_gn_6_38260 Lactuca sativa HOM05D005260 ORTHO05D006390 3.8e-101 372.5 373 58.2
PGSC0003DMG400003180 Solanum tuberosum HOM05D005260 ORTHO05D006390 3.8e-101 372.5 389 55.0
Cc06_g15200 Coffea canephora HOM05D005260 ORTHO05D006390 4.9e-101 372.1 380 56.8
Haze_19232 Corylus avellana HOM05D005260 ORTHO05D006390 4.9e-101 372.1 374 55.6
QL02p092738 Quercus lobata HOM05D005260 ORTHO05D006390 4.9e-101 372.1 384 56.2
Lj4g0015138 Lotus japonicus HOM05D005260 ORTHO05D006390 6.4e-101 371.7 366 57.4
TPR.G9269 Trifolium pratense HOM05D005260 ORTHO05D006390 6.4e-101 371.7 370 57.8
GSVIVG01023592001 Vitis vinifera HOM05D005260 ORTHO05D006390 1.4e-100 370.5 361 57.1
Cfa020845 Carpinus fangiana HOM05D005260 ORTHO05D006390 3.2e-100 369.4 375 55.5
Nitab4.5_0001201g0060 Nicotiana tabacum HOM05D005260 ORTHO05D006390 3.2e-100 369.4 388 55.9
Potri.018G109800 Populus trichocarpa HOM05D005260 ORTHO05D006390 3.2e-100 369.4 375 56.3
Rhsim01G0035700 Rhododendron simsii HOM05D005260 ORTHO05D006390 4.2e-100 369.0 388 56.4
SGA_v2.0_scaffold265G46122 Striga asiatica HOM05D005260 ORTHO05D006390 4.2e-100 369.0 369 56.9
Ciclev10008691m.g Citrus clementina HOM05D005260 ORTHO05D006390 5.4e-100 368.6 376 55.1
Psat4g008640 Pisum sativum HOM05D005260 ORTHO05D006390 7.1e-100 368.2 371 58.2
Rhsim01G0045600 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.2e-99 367.5 394 55.3
RhsimUnG0040000 Rhododendron simsii HOM05D005260 ORTHO05D006390 1.6e-99 367.1 372 57.3
Oeu051690.1 Olea europaea HOM05D005260 ORTHO05D006390 2.1e-99 366.7 375 57.3
TWI34G1822 Tripterygium wilfordii HOM05D005260 ORTHO05D006390 2.7e-99 366.3 382 55.5
Manes.14G111500 Manihot esculenta HOM05D005260 ORTHO05D006390 3.5e-99 365.9 378 55.6
Oeu050475.1 Olea europaea HOM05D005260 ORTHO05D006390 3.5e-99 365.9 376 55.9
Sabra06G0142800 Salix brachista HOM05D005260 ORTHO05D006390 4.6e-99 365.5 367 56.9
Prupe.7G260500 Prunus persica HOM05D005260 ORTHO05D006390 6.0e-99 365.2 388 55.2
Rhsim01G0036000 Rhododendron simsii HOM05D005260 ORTHO05D006390 7.8e-99 364.8 394 55.3
Eucgr.C02595 Eucalyptus grandis HOM05D005260 ORTHO05D006390 1.3e-98 364.0 379 53.8
Potri.006G186900 Populus trichocarpa HOM05D005260 ORTHO05D006390 1.7e-98 363.6 376 56.1
Phvul.003G157300 Phaseolus vulgaris HOM05D005260 ORTHO05D006390 8.7e-98 361.3 371 54.7
Sabra06G0141800 Salix brachista HOM05D005260 ORTHO05D006390 1.9e-97 360.1 368 56.5
Glyma.02G202400 Glycine max HOM05D005260 ORTHO05D006390 2.5e-97 359.8 373 53.9
HanXRQChr13g0397631 Helianthus annuus HOM05D005260 ORTHO05D006390 2.5e-97 359.8 379 53.8
MSTRG.6120 Avicennia marina HOM05D005260 ORTHO05D006390 4.3e-97 359.0 373 55.2
Glyma.17G075400 Glycine max HOM05D005260 ORTHO05D006390 9.6e-97 357.8 374 54.3
RcHm_v2.0_Chr2g0085941 Rosa chinensis HOM05D005260 ORTHO05D006390 1.3e-96 357.5 383 56.1
Sabra18G0092700 Salix brachista HOM05D005260 ORTHO05D006390 2.8e-96 356.3 370 55.4
MELO3C010238.2 Cucumis melo HOM05D005260 ORTHO05D006390 3.6e-96 355.9 384 55.2
CsaV3_1G028770 Cucumis sativus L. HOM05D005260 ORTHO05D006390 3.6e-96 355.9 384 54.4
MD15G1155100 Malus domestica HOM05D005260 ORTHO05D006390 3.6e-96 355.9 384 54.9
PSO170G6608 Papaver somniferum HOM05D005260 ORTHO05D006390 3.6e-96 355.9 396 53.3
ClCG06G015480 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.1e-95 354.4 381 54.6
PSO017G5909 Papaver somniferum HOM05D005260 ORTHO05D006390 1.1e-95 354.4 397 53.4
Thecc.09G033300 Theobroma cacao HOM05D005260 ORTHO05D006390 2.4e-95 353.2 369 56.1
Gohir.A13G184700 Gossypium hirsutum HOM05D005260 ORTHO05D006390 3.1e-95 352.8 370 55.9
Gorai.013G217000 Gossypium raimondii HOM05D005260 ORTHO05D006390 5.3e-95 352.1 371 54.4
Medtr4g131190 Medicago truncatula HOM05D005260 ORTHO05D006390 5.3e-95 352.1 362 56.4
AT5G58020 Arabidopsis thaliana HOM05D005260 ORTHO05D006390 9.0e-95 351.3 373 53.9
ECA233G0390 Erigeron canadensis HOM05D005260 ORTHO05D006390 9.0e-95 351.3 343 58.0
CARHR271830 Cardamine hirsuta HOM05D005260 ORTHO05D006390 2.0e-94 350.1 373 54.2
Gohir.D13G191100 Gossypium hirsutum HOM05D005260 ORTHO05D006390 2.0e-94 350.1 369 54.5
AL8G34120 Arabidopsis lyrata HOM05D005260 ORTHO05D006390 2.6e-94 349.7 372 55.1
FAN19G1826 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.5e-94 349.0 379 54.9
FAN23G1120 Fragaria x ananassa HOM05D005260 ORTHO05D006390 4.5e-94 349.0 379 55.7
Thhalv10013961m.g Eutrema salsugineum HOM05D005260 ORTHO05D006390 5.8e-94 348.6 326 58.9
Duzib168G1964 Durio zibethinus HOM05D005260 ORTHO05D006390 7.6e-94 348.2 369 56.4
Cpa.g.sc46.130 Carica papaya HOM05D005260 ORTHO05D006390 2.2e-93 346.7 375 55.2
Carub.0008s1857 Capsella rubella HOM05D005260 ORTHO05D006390 3.8e-93 345.9 373 53.9
Atru.chr6.1391 Acer truncatum HOM05D005260 ORTHO05D006390 4.9e-93 345.5 350 56.9
BcaB05g22395 Brassica carinata HOM05D005260 ORTHO05D006390 4.9e-93 345.5 368 55.4
Migut.J01331 Erythranthe guttata HOM05D005260 ORTHO05D006390 4.9e-93 345.5 372 54.8
Atru.chr7.58 Acer truncatum HOM05D005260 ORTHO05D006390 6.4e-93 345.1 350 56.9
BcaC04g19916 Brassica carinata HOM05D005260 ORTHO05D006390 6.4e-93 345.1 373 54.4
A02p08050 Brassica napus HOM05D005260 ORTHO05D006390 6.4e-93 345.1 370 53.8
A10p16150 Brassica napus HOM05D005260 ORTHO05D006390 1.4e-92 344.0 373 54.2
C09p49880 Brassica napus HOM05D005260 ORTHO05D006390 1.4e-92 344.0 373 54.2
BraA02t05877Z Brassica rapa HOM05D005260 ORTHO05D006390 1.4e-92 344.0 370 54.3
BraA10t43614Z Brassica rapa HOM05D005260 ORTHO05D006390 1.9e-92 343.6 373 53.9
Sp6g19700 Schrenkiella parvula HOM05D005260 ORTHO05D006390 1.9e-92 343.6 373 53.9
BolC9t57839H Brassica oleracea HOM05D005260 ORTHO05D006390 3.2e-92 342.8 373 54.2
Duzib150G0891 Durio zibethinus HOM05D005260 ORTHO05D006390 3.2e-92 342.8 377 53.3
Sed0012515 Sechium edule HOM05D005260 ORTHO05D006390 3.2e-92 342.8 380 53.9
SalBow1G8640 Salvia bowleyana HOM05D005260 ORTHO05D006390 4.2e-92 342.4 370 52.7
Aa31LG3G13860 Aethionema arabicum HOM05D005260 ORTHO05D006390 7.1e-92 341.7 372 53.2
FvH4_1g01150 Fragaria vesca HOM05D005260 ORTHO05D006390 7.1e-92 341.7 380 54.5
THA.LOC104817828 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 7.1e-92 341.7 376 53.2
VMungo1215G1942 Vigna mungo HOM05D005260 ORTHO05D006390 7.1e-92 341.7 371 53.1
FAN26G1108 Fragaria x ananassa HOM05D005260 ORTHO05D006390 9.3e-92 341.3 375 54.7
Aqoxy3G00834 Aquilegia oxysepala HOM05D005260 ORTHO05D006390 1.2e-91 340.9 373 53.4
BolC2t07483H Brassica oleracea HOM05D005260 ORTHO05D006390 1.6e-91 340.5 370 54.9
FAN28G1391 Fragaria x ananassa HOM05D005260 ORTHO05D006390 2.7e-91 339.7 375 54.9
Os06g0183900 Oryza sativa ssp. japonica HOM05D005260 ORTHO05D006390 1.9e-89 333.6 367 54.8
Gorai.006G273400 Gossypium raimondii HOM05D005260 ORTHO05D006390 4.3e-89 332.4 350 55.7
SHI04751 Sapria himalayana HOM05D005260 ORTHO05D006390 4.3e-89 332.4 375 51.7
THA.LOC104817826 Tarenaya hassleriana HOM05D005260 ORTHO05D006390 7.4e-89 331.6 371 52.8
C02p13690 Brassica napus HOM05D005260 ORTHO05D006390 9.6e-89 331.3 370 53.8
Actinidia04287 Actinidia chinensis HOM05D005260 ORTHO05D006390 4.8e-88 328.9 376 51.6
Lj7P455T24 Lonicera japonica HOM05D005260 ORTHO05D006390 8.1e-88 328.2 332 56.0
SEGI_13576 Sequoiadendron giganteum HOM05D005260 ORTHO05D006390 2.4e-87 326.6 380 49.5
AUR62021106 Chenopodium quinoa HOM05D005260 ORTHO05D006390 6.9e-87 325.1 260 66.2
MBI14_g37102_MAGBIO Magnolia biondii HOM05D005260 ORTHO05D006390 2.6e-86 323.2 394 51.3
Pp3c14_10930 Physcomitrium patens HOM05D005260 ORTHO05D006390 1.3e-85 320.9 365 50.4
Mapoly0043s0023 Marchantia polymorpha HOM05D005260 ORTHO05D006390 2.9e-85 319.7 396 48.0
COL.COLO4_18779 Corchorus olitorius HOM05D005260 ORTHO05D006390 6.7e-82 308.5 370 51.9
SGA_v2.0_scaffold45G17044 Striga asiatica HOM05D005260 ORTHO05D006390 7.4e-81 305.1 356 50.8
AagrBONN_evm.TU.Sc2ySwM_228.4055 Anthoceros agrestis HOM05D005260 ORTHO05D006390 1.8e-79 300.4 327 49.8
SMO307G0072 Selaginella moellendorffii HOM05D005260 ORTHO05D006390 6.9e-79 298.5 320 51.9
DCAR_020883 Daucus carota HOM05D005260 ORTHO05D006390 4.2e-76 289.3 280 57.5
Gohir.D09G249000 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.1e-68 264.6 280 56.1
CiPaw.16G114800 Carya illinoinensis HOM05D005260 ORTHO05D006390 1.6e-67 260.8 273 53.5
CBR_g44540 Chara braunii HOM05D005260 ORTHO05D006390 6.1e-67 258.8 383 41.5
Dinv42879 Davidia involucrata HOM05D005260 ORTHO05D006390 1.1e-65 254.6 342 47.4
Dinv43221 Davidia involucrata HOM05D005260 ORTHO05D006390 1.1e-65 254.6 342 47.4
Gohir.D07G030400 Gossypium hirsutum HOM05D005260 ORTHO05D006390 1.5e-57 227.6 278 50.7
Gorai.001G031600 Gossypium raimondii HOM05D005260 ORTHO05D006390 3.3e-57 226.5 278 50.4
Actinidia38337 Actinidia chinensis HOM05D005260 ORTHO05D006390 1.0e-53 214.9 168 65.5
Lalb_Chr12g0198621 Lupinus albus HOM05D005260 ORTHO05D006390 1.2e-43 181.4 192 55.2
HPP92_018747 Vanilla planifolia HOM05D005260 ORTHO05D006390 2.0e-41 174.1 193 53.4
unitig_0.g2819 Utricularia gibba HOM05D005260 ORTHO05D006390 3.3e-41 173.3 213 47.9
Cre03.g150650 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 4.1e-39 166.4 388 33.0
CDE02G0414 Ceratophyllum demersum HOM05D005260 ORTHO05D006390 2.0e-33 147.5 347 36.0
PRCOL_00003864 Prasinoderma coloniale HOM05D005260 ORTHO05D006390 8.3e-32 142.1 192 42.2
HPP92_018748 Vanilla planifolia HOM05D005260 ORTHO05D006390 4.5e-30 136.3 132 53.8
AagrBONN_evm.TU.Sc2ySwM_344.4069 Anthoceros agrestis HOM05D005260 ORTHO05D006390 9.5e-28 128.6 172 45.3
Atru.chr13.1961 Acer truncatum HOM05D005260 ORTHO05D006390 4.1e-23 113.2 159 49.7
HanXRQChr09g0262911 Helianthus annuus HOM05D005260 ORTHO05D006390 4.1e-23 113.2 90 61.1
TAR625G0635 Trochodendron aralioides HOM05D005260 ORTHO05D006390 1.6e-22 111.3 145 52.4
ATR0579G027 Amborella trichopoda HOM05D005260 ORTHO05D006390 2.5e-20 104.0 119 47.9
MELO3C004727.2 Cucumis melo HOM05D005260 ORTHO05D006390 6.1e-19 99.4 84 59.5
Zm00001eb158280 Zea mays HOM05D005260 ORTHO05D006390 1.9e-15 87.8 65 60.0
Cfa026666 Carpinus fangiana HOM05D005260 ORTHO05D006390 1.8e-10 71.2 237 29.1
MCO05G557 Micromonas commoda HOM05D005260 ORTHO05D006390 2.3e-10 70.9 195 26.2
BolC3t13905H Brassica oleracea HOM05D005260 ORTHO05D006390 1.5e-09 68.2 50 70.0
CiPaw.12G098000 Carya illinoinensis HOM05D003547 ORTHO05D004236 2.2e-08 64.3 41 65.9
Cre17.g715950 Chlamydomonas reinhardtii HOM05D005260 ORTHO05D006390 6.4e-08 62.8 238 23.9
ClCG06G012260 Citrullus lanatus HOM05D005260 ORTHO05D006390 1.1e-07 62.0 53 58.5
CBR_g37538 Chara braunii HOM05D005260 ORTHO05D006390 3.2e-07 60.5 281 23.1


User provided reference genes

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