Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g045030 Amaranthus hybridus HOM05D005829 ORTHO05D007246 6.5e-103 377.5 202 100.0
EL10Ac5g11432 Beta vulgaris HOM05D005829 ORTHO05D007246 1.4e-57 226.9 208 61.1
Hund02393 Selenicereus undatus HOM05D005829 ORTHO05D007246 3.2e-57 225.7 206 61.7
Sc12g0006790 Simmondsia chinensis HOM05D005829 ORTHO05D007246 1.9e-46 189.9 182 59.3
QL10p025073 Quercus lobata HOM05D005829 ORTHO05D007246 1.5e-43 180.3 215 49.8
ECA234G2972 Erigeron canadensis HOM05D005829 ORTHO05D007246 7.6e-43 177.9 174 59.8
CSS0021100 Camellia sinensis var. sinensis HOM05D005829 ORTHO05D007246 9.9e-43 177.6 172 55.2
Cc04_g07210 Coffea canephora HOM05D005829 ORTHO05D007246 9.9e-43 177.6 167 56.9
GSVIVG01008273001 Vitis vinifera HOM05D005829 ORTHO05D007246 2.2e-42 176.4 218 52.8
arahy.Tifrunner.gnm1.ann1.K96EGP Arachis hypogaea HOM05D005829 ORTHO05D007246 4.9e-42 175.3 193 53.9
Oeu006380.1 Olea europaea HOM05D005829 ORTHO05D007246 4.9e-42 175.3 211 50.2
Lsat_1_v5_gn_8_146520 Lactuca sativa HOM05D005829 ORTHO05D007246 1.1e-41 174.1 161 60.9
TWI15G0782 Tripterygium wilfordii HOM05D005829 ORTHO05D007246 1.9e-41 173.3 162 59.3
Peaxi162Scf00013g00945 Petunia axillaris HOM05D005829 ORTHO05D007246 3.2e-41 172.6 159 58.5
Migut.I00369 Erythranthe guttata HOM05D005829 ORTHO05D007246 4.2e-41 172.2 168 58.9
HanXRQChr10g0314971 Helianthus annuus HOM05D005829 ORTHO05D007246 4.2e-41 172.2 170 57.6
Gorai.006G194900 Gossypium raimondii HOM05D005829 ORTHO05D007246 9.3e-41 171.0 162 59.3
Ciclev10022208m.g Citrus clementina HOM05D005829 ORTHO05D007246 1.2e-40 170.6 216 51.4
Cpa.g.sc13.3 Carica papaya HOM05D005829 ORTHO05D007246 1.6e-40 170.2 208 51.9
Cfa019789 Carpinus fangiana HOM05D005829 ORTHO05D007246 1.6e-40 170.2 210 48.1
Manes.05G145805 Manihot esculenta HOM05D005829 ORTHO05D007246 2.1e-40 169.9 109 73.4
Haze_18659 Corylus avellana HOM05D005829 ORTHO05D007246 3.5e-40 169.1 214 48.6
Dinv36156 Davidia involucrata HOM05D005829 ORTHO05D007246 3.5e-40 169.1 162 56.2
CiPaw.15G129500 Carya illinoinensis HOM05D005829 ORTHO05D007246 4.6e-40 168.7 210 51.0
Gohir.D09G173000 Gossypium hirsutum HOM05D005829 ORTHO05D007246 4.6e-40 168.7 162 58.6
Gohir.A09G177500 Gossypium hirsutum HOM05D005829 ORTHO05D007246 6.0e-40 168.3 162 58.6
Nitab4.5_0011561g0030 Nicotiana tabacum HOM05D005829 ORTHO05D007246 6.0e-40 168.3 200 52.5
Oeu046995.1 Olea europaea HOM05D005829 ORTHO05D007246 6.0e-40 168.3 193 51.8
Manes.01G012500 Manihot esculenta HOM05D005829 ORTHO05D007246 1.3e-39 167.2 166 55.4
Potri.015G053800 Populus trichocarpa HOM05D005829 ORTHO05D007246 1.3e-39 167.2 160 59.4
MSTRG.11323 Avicennia marina HOM05D005829 ORTHO05D007246 2.3e-39 166.4 174 55.7
Sabra15G0075500 Salix brachista HOM05D005829 ORTHO05D007246 3.9e-39 165.6 193 51.3
unitig_749.g13417 Utricularia gibba HOM05D005829 ORTHO05D007246 3.9e-39 165.6 99 76.8
Lalb_Chr14g0371231 Lupinus albus HOM05D005829 ORTHO05D007246 5.1e-39 165.2 195 51.3
Aqoxy3G00323 Aquilegia oxysepala HOM05D005829 ORTHO05D007246 1.1e-38 164.1 176 50.6
PGR083G1885 Punica granatum HOM05D005829 ORTHO05D007246 1.5e-38 163.7 166 56.6
Duzib084G1006 Durio zibethinus HOM05D005829 ORTHO05D007246 1.9e-38 163.3 197 50.3
Nitab4.5_0010801g0020 Nicotiana tabacum HOM05D005829 ORTHO05D007246 1.9e-38 163.3 210 51.0
PGSC0003DMG400004051 Solanum tuberosum HOM05D005829 ORTHO05D007246 3.3e-38 162.5 176 54.0
PSO017G1947 Papaver somniferum HOM05D005829 ORTHO05D007246 5.6e-38 161.8 211 50.7
CAN.G423.7 Capsicum annuum HOM05D005829 ORTHO05D007246 7.3e-38 161.4 99 75.8
Duzib068G0473 Durio zibethinus HOM05D005829 ORTHO05D007246 7.3e-38 161.4 161 55.3
FAN04G2288 Fragaria x ananassa HOM05D005829 ORTHO05D007246 1.6e-37 160.2 154 55.8
TAR629G3023 Trochodendron aralioides HOM05D005829 ORTHO05D007246 1.6e-37 160.2 181 51.4
CANSAT21G0600 Cannabis sativa HOM05D005829 ORTHO05D007246 2.1e-37 159.8 208 47.1
Sopen06g026440 Solanum pennellii HOM05D005829 ORTHO05D007246 2.1e-37 159.8 164 54.9
Solyc06g069170.4 Solanum lycopersicum HOM05D005829 ORTHO05D007246 2.8e-37 159.5 175 53.1
MD06G1215200 Malus domestica HOM05D005829 ORTHO05D007246 3.6e-37 159.1 158 55.7
Potri.015G054100 Populus trichocarpa HOM05D005829 ORTHO05D007246 6.2e-37 158.3 146 57.5
FAN08G3097 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.1e-37 157.9 154 55.2
FAN13G0492 Fragaria x ananassa HOM05D005829 ORTHO05D007246 8.1e-37 157.9 207 46.4
PSO478G3740 Papaver somniferum HOM05D005829 ORTHO05D007246 8.1e-37 157.9 214 47.7
arahy.Tifrunner.gnm1.ann1.SID7TX Arachis hypogaea HOM05D005829 ORTHO05D007246 1.1e-36 157.5 205 48.8
MELO3C017300.2 Cucumis melo HOM05D005829 ORTHO05D007246 2.4e-36 156.4 212 48.6
Eucgr.K02215 Eucalyptus grandis HOM05D005829 ORTHO05D007246 2.4e-36 156.4 98 75.5
Prupe.5G220500 Prunus persica HOM05D005829 ORTHO05D007246 2.4e-36 156.4 209 47.8
Atru.chr9.821 Acer truncatum HOM05D005829 ORTHO05D007246 4.0e-36 155.6 211 46.4
ATR0665G268 Amborella trichopoda HOM05D005829 ORTHO05D007246 5.3e-36 155.2 99 72.7
FAN18G3094 Fragaria x ananassa HOM05D005829 ORTHO05D007246 5.3e-36 155.2 207 45.9
Thecc.03G033800 Theobroma cacao HOM05D005829 ORTHO05D007246 5.3e-36 155.2 163 53.4
DCAR_023199 Daucus carota HOM05D005829 ORTHO05D007246 9.0e-36 154.5 177 51.4
Actinidia06971 Actinidia chinensis HOM05D005829 ORTHO05D007246 1.5e-35 153.7 213 48.8
Sed0000228 Sechium edule HOM05D005829 ORTHO05D007246 2.0e-35 153.3 93 75.3
CsaV3_1G003750 Cucumis sativus L. HOM05D005829 ORTHO05D007246 5.8e-35 151.8 212 47.2
ClCG06G014890 Citrullus lanatus HOM05D005829 ORTHO05D007246 7.6e-35 151.4 214 47.7
SGA_v2.0_scaffold25G10988 Striga asiatica HOM05D005829 ORTHO05D007246 1.7e-34 150.2 202 49.0
MD14G1226000 Malus domestica HOM05D005829 ORTHO05D007246 3.8e-34 149.1 158 51.9
RcHm_v2.0_Chr7g0185261 Rosa chinensis HOM05D005829 ORTHO05D007246 1.0e-31 141.0 207 43.0
vmacro04041 Vaccinium macrocarpon HOM05D005829 ORTHO05D007246 1.0e-31 141.0 223 41.3
HPP92_013214 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.0e-31 141.0 217 45.2
HPP92_013263 Vanilla planifolia HOM05D005829 ORTHO05D007246 1.7e-31 140.2 217 45.2
FvH4_5g12290 Fragaria vesca HOM05D005829 ORTHO05D007246 2.3e-31 139.8 207 43.0
FAN18G2130 Fragaria x ananassa HOM05D005829 ORTHO05D007246 2.3e-31 139.8 207 43.0
Rhsim13G0208500 Rhododendron simsii HOM05D005829 ORTHO05D007246 6.6e-31 138.3 238 40.3
CDE05G0659 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 1.1e-30 137.5 134 53.7
Os03g0710600 Oryza sativa ssp. japonica HOM05D005829 ORTHO05D007246 1.1e-30 137.5 94 72.3
Nn1g06955 Nelumbo nucifera HOM05D005829 ORTHO05D007246 2.5e-30 136.3 80 75.0
Aa31LG4G4200 Aethionema arabicum HOM05D005829 ORTHO05D007246 9.6e-30 134.4 222 42.3
AUR62025855 Chenopodium quinoa HOM05D005829 ORTHO05D007246 1.3e-29 134.0 202 47.0
Zm00001eb054790 Zea mays HOM05D005829 ORTHO05D007246 1.6e-29 133.7 94 71.3
CDE11G0392 Ceratophyllum demersum HOM05D005829 ORTHO05D007246 2.1e-29 133.3 168 45.8
Zm00001eb216440 Zea mays HOM05D005829 ORTHO05D007246 2.8e-29 132.9 94 70.2
THA.LOC104813901 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 3.6e-29 132.5 223 40.8
AUR62029856 Chenopodium quinoa HOM05D005829 ORTHO05D007246 6.2e-29 131.7 202 46.0
AL2G33720 Arabidopsis lyrata HOM05D005829 ORTHO05D007246 2.4e-28 129.8 177 46.9
CARHR067000 Cardamine hirsuta HOM05D005829 ORTHO05D007246 5.3e-28 128.6 174 46.6
Carub.0002s2066 Capsella rubella HOM05D005829 ORTHO05D007246 9.0e-28 127.9 180 43.3
SEGI_06072 Sequoiadendron giganteum HOM05D005829 ORTHO05D007246 1.2e-27 127.5 100 58.0
BcaC09g48855 Brassica carinata HOM05D005829 ORTHO05D007246 1.5e-27 127.1 98 64.3
C01p45190 Brassica napus HOM05D005829 ORTHO05D007246 1.5e-27 127.1 98 64.3
C06p33760 Brassica napus HOM05D005829 ORTHO05D007246 1.5e-27 127.1 96 65.6
BolC1t04492H Brassica oleracea HOM05D005829 ORTHO05D007246 1.5e-27 127.1 98 64.3
BolC6t38490H Brassica oleracea HOM05D005829 ORTHO05D007246 1.5e-27 127.1 96 65.6
AT1G73885 Arabidopsis thaliana HOM05D005829 ORTHO05D007246 2.6e-27 126.3 122 54.9
A07p29590 Brassica napus HOM05D005829 ORTHO05D007246 2.6e-27 126.3 96 65.6
BraA07t30600Z Brassica rapa HOM05D005829 ORTHO05D007246 2.6e-27 126.3 96 65.6
Sp5g29090 Schrenkiella parvula HOM05D005829 ORTHO05D007246 2.6e-27 126.3 160 48.1
BcaB03g15734 Brassica carinata HOM05D005829 ORTHO05D007246 7.6e-27 124.8 222 43.2
BcaC08g45615 Brassica carinata HOM05D005829 ORTHO05D007246 7.6e-27 124.8 222 41.4
Thhalv10019131m.g Eutrema salsugineum HOM05D005829 ORTHO05D007246 9.9e-27 124.4 162 51.9
BcaB05g24816 Brassica carinata HOM05D005829 ORTHO05D007246 2.2e-26 123.2 92 66.3
BcaB05g24818 Brassica carinata HOM05D005829 ORTHO05D007246 2.2e-26 123.2 92 66.3
BcaC03g15467 Brassica carinata HOM05D005829 ORTHO05D007246 2.2e-26 123.2 173 46.8
C02p31470 Brassica napus HOM05D005829 ORTHO05D007246 2.2e-26 123.2 173 46.8
BolC2t09178H Brassica oleracea HOM05D005829 ORTHO05D007246 2.2e-26 123.2 173 46.8
BraA02t06935Z Brassica rapa HOM05D005829 ORTHO05D007246 1.4e-25 120.6 173 46.2
A02p18930 Brassica napus HOM05D005829 ORTHO05D007246 2.4e-25 119.8 182 44.5
Lj2g0004175 Lotus japonicus HOM05D005829 ORTHO05D007246 2.1e-24 116.7 161 47.2
AagrBONN_evm.TU.Sc2ySwM_228.2224 Anthoceros agrestis HOM05D005829 ORTHO05D007246 7.9e-24 114.8 100 58.0
Ca_25501_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 1.3e-23 114.0 164 43.3
AagrBONN_evm.TU.Sc2ySwM_228.1174 Anthoceros agrestis HOM05D005829 ORTHO05D007246 5.1e-23 112.1 100 57.0
TPR.G35237 Trifolium pratense HOM05D005829 ORTHO05D007246 2.5e-22 109.8 86 60.5
Ca_00264_v3 Cicer arietinum L. HOM05D005829 ORTHO05D007246 5.6e-22 108.6 162 42.0
FAN14G0369 Fragaria x ananassa HOM05D005829 ORTHO05D007246 6.2e-21 105.1 98 52.0
Mapoly0028s0124 Marchantia polymorpha HOM05D005829 ORTHO05D007246 8.1e-21 104.8 98 50.0
Gohir.A08G094610 Gossypium hirsutum HOM05D005829 ORTHO05D007246 1.1e-20 104.4 185 40.0
BcaC03g15466 Brassica carinata HOM05D005829 ORTHO05D007246 3.1e-20 102.8 159 45.3
Medtr6g084620 Medicago truncatula HOM05D005829 ORTHO05D007246 4.5e-19 99.0 158 42.4
Pp3c4_12650 Physcomitrium patens HOM05D005829 ORTHO05D007246 6.5e-18 95.1 86 54.7
Pp3c4_12780 Physcomitrium patens HOM05D005829 ORTHO05D007246 6.5e-18 95.1 86 54.7
Nn3g17806 Nelumbo nucifera HOM05D005829 ORTHO05D007246 9.6e-14 81.3 114 44.7
THA.LOC104813291 Tarenaya hassleriana HOM05D005829 ORTHO05D007246 1.6e-13 80.5 69 66.7
Actinidia24460 Actinidia chinensis HOM05D005829 ORTHO05D007246 2.2e-10 70.1 42 64.3
COL.COLO4_04672 Corchorus olitorius HOM05D005829 ORTHO05D007246 1.1e-09 67.8 102 40.2
SMO241G0040 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 5.5e-09 65.5 50 50.0
SMO232G0029 Selaginella moellendorffii HOM05D005829 ORTHO05D007246 7.1e-09 65.1 53 47.2
CBR_g29305 Chara braunii HOM05D005829 ORTHO05D007246 9.3e-09 64.7 39 66.7
Glyma.07G090700 Glycine max HOM05D005829 ORTHO05D007246 8.7e-07 58.2 145 33.8
Phvul.004G158500 Phaseolus vulgaris HOM05D005829 ORTHO05D007246 3.3e-06 56.2 106 33.0


User provided reference genes

Program Settings