Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044870 Amaranthus hybridus HOM05D001386 ORTHO05D019544 2.3e-45 185.3 97 100.0
Ah.02g115290 Amaranthus hybridus HOM05D001386 ORTHO05D004014 3.3e-28 128.3 72 87.5
AUR62021844 Chenopodium quinoa HOM05D001386 ORTHO05D004014 5.3e-26 120.9 72 80.6
AUR62012809 Chenopodium quinoa HOM05D001386 ORTHO05D004014 6.9e-26 120.6 68 85.3
AUR62025915 Chenopodium quinoa HOM05D001386 ORTHO05D004014 9.0e-26 120.2 72 80.6
Hund02424 Selenicereus undatus HOM05D001386 ORTHO05D004014 1.7e-24 115.9 72 79.2
Hund10178 Selenicereus undatus HOM05D001386 ORTHO05D004014 2.9e-24 115.2 72 80.6
HanXRQChr05g0153931 Helianthus annuus HOM05D001386 ORTHO05D004014 6.4e-24 114.0 72 77.8
Lj9C476G21 Lonicera japonica HOM05D001386 ORTHO05D004014 1.1e-23 113.2 72 76.4
PGSC0003DMG400002765 Solanum tuberosum HOM05D001386 ORTHO05D004014 1.1e-23 113.2 73 76.7
Lsat_1_v5_gn_4_76561 Lactuca sativa HOM05D001386 ORTHO05D004014 2.4e-23 112.1 72 76.4
Lsat_1_v5_gn_1_29280 Lactuca sativa HOM05D001386 ORTHO05D004014 5.5e-23 110.9 73 72.6
CAN.G1076.18 Capsicum annuum HOM05D001386 ORTHO05D004014 7.1e-23 110.5 73 74.0
Nitab4.5_0013308g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 7.1e-23 110.5 72 76.4
Sc22g0004190 Simmondsia chinensis HOM05D001386 ORTHO05D004014 7.1e-23 110.5 72 73.6
Nitab4.5_0001338g0160 Nicotiana tabacum HOM05D001386 ORTHO05D004014 9.3e-23 110.2 73 74.0
Nitab4.5_0013216g0010 Nicotiana tabacum HOM05D001386 ORTHO05D004014 9.3e-23 110.2 73 74.0
Solyc01g100570.4 Solanum lycopersicum HOM05D001386 ORTHO05D004014 9.3e-23 110.2 73 74.0
Sopen01g044070 Solanum pennellii HOM05D001386 ORTHO05D004014 9.3e-23 110.2 73 74.0
Aa31LG10G140 Aethionema arabicum HOM05D001386 ORTHO05D004014 1.2e-22 109.8 72 73.6
MELO3C026228.2 Cucumis melo HOM05D001386 ORTHO05D004014 1.2e-22 109.8 70 75.7
CsaV3_1G000680 Cucumis sativus L. HOM05D001386 ORTHO05D004014 1.2e-22 109.8 70 75.7
ECA232G5020 Erigeron canadensis HOM05D001386 ORTHO05D004014 1.6e-22 109.4 72 76.4
HanXRQChr09g0273011 Helianthus annuus HOM05D001386 ORTHO05D004014 1.6e-22 109.4 72 76.4
Nitab4.5_0000155g0130 Nicotiana tabacum HOM05D001386 ORTHO05D004014 1.6e-22 109.4 72 75.0
Peaxi162Scf00673g00440 Petunia axillaris HOM05D001386 ORTHO05D004014 1.6e-22 109.4 73 71.2
CSS0012516 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 2.1e-22 109.0 72 73.6
Duzib068G0731 Durio zibethinus HOM05D001386 ORTHO05D004014 2.1e-22 109.0 72 73.6
Cpa.g.sc2085.2 Carica papaya HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 72.2
Cfa018857 Carpinus fangiana HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 73.6
ClCG06G017770 Citrullus lanatus HOM05D001386 ORTHO05D004014 2.7e-22 108.6 70 75.7
Haze_07241 Corylus avellana HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 73.6
Gohir.A11G035800 Gossypium hirsutum HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 72.2
Gohir.D11G039400 Gossypium hirsutum HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 72.2
Gorai.007G042300 Gossypium raimondii HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 72.2
MBI11_g06762_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 75.0
MBI15_g10562_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 2.7e-22 108.6 72 75.0
Nn4g22384 Nelumbo nucifera HOM05D001386 ORTHO05D004014 2.7e-22 108.6 73 74.0
CDE04G1039 Ceratophyllum demersum HOM05D001386 ORTHO05D004014 3.5e-22 108.2 73 72.6
HanXRQChr16g0497801 Helianthus annuus HOM05D001386 ORTHO05D004014 3.5e-22 108.2 72 75.0
SalBow1G2492 Salvia bowleyana HOM05D001386 ORTHO05D004014 3.5e-22 108.2 72 69.4
SGA_v2.0_scaffold37G14621 Striga asiatica HOM05D001386 ORTHO05D004014 3.5e-22 108.2 69 72.5
Migut.I00515 Erythranthe guttata HOM05D001386 ORTHO05D004014 4.6e-22 107.8 72 72.2
Gohir.A07G052200 Gossypium hirsutum HOM05D001386 ORTHO05D004014 4.6e-22 107.8 72 70.8
Nn3g16517 Nelumbo nucifera HOM05D001386 ORTHO05D004014 4.6e-22 107.8 72 72.2
SGA_v2.0_scaffold5G02873 Striga asiatica HOM05D001386 ORTHO05D004014 4.6e-22 107.8 72 69.4
CiPaw.11G009700 Carya illinoinensis HOM05D001386 ORTHO05D004014 6.0e-22 107.5 72 72.2
COL.COLO4_28077 Corchorus olitorius HOM05D001386 ORTHO05D004014 6.0e-22 107.5 72 70.8
PSO063G7389 Papaver somniferum HOM05D001386 ORTHO05D004014 6.0e-22 107.5 72 72.2
EL10As4g23419 Beta vulgaris HOM05D001386 ORTHO05D004014 7.9e-22 107.1 84 65.5
Oeu056005.1 Olea europaea HOM05D001386 ORTHO05D004014 7.9e-22 107.1 72 72.2
Dinv11152 Davidia involucrata HOM05D001386 ORTHO05D004014 1.0e-21 106.7 72 70.8
FAN04G2840 Fragaria x ananassa HOM05D001386 ORTHO05D004014 1.0e-21 106.7 70 71.4
FAN08G1531 Fragaria x ananassa HOM05D001386 ORTHO05D004014 1.0e-21 106.7 70 71.4
Glyma.05G046400 Glycine max HOM05D001386 ORTHO05D004014 1.0e-21 106.7 72 72.2
Oeu023478.1 Olea europaea HOM05D001386 ORTHO05D004014 1.0e-21 106.7 72 72.2
Phvul.003G209500 Phaseolus vulgaris HOM05D001386 ORTHO05D004014 1.0e-21 106.7 72 70.8
VMungo1080G0898 Vigna mungo HOM05D001386 ORTHO05D004014 1.0e-21 106.7 72 70.8
arahy.Tifrunner.gnm1.ann1.45I9WG Arachis hypogaea HOM05D001386 ORTHO05D004014 1.3e-21 106.3 72 69.4
CiPaw.12G037600 Carya illinoinensis HOM05D001386 ORTHO05D004014 1.3e-21 106.3 72 72.2
Gohir.D07G056700 Gossypium hirsutum HOM05D001386 ORTHO05D004014 1.3e-21 106.3 72 69.4
Gorai.001G060200 Gossypium raimondii HOM05D001386 ORTHO05D004014 1.3e-21 106.3 72 69.4
Sed0000726 Sechium edule HOM05D001386 ORTHO05D004014 1.3e-21 106.3 70 72.9
GSVIVG01008506001 Vitis vinifera HOM05D001386 ORTHO05D004014 1.3e-21 106.3 72 72.2
Actinidia25592 Actinidia chinensis HOM05D001386 ORTHO05D004014 1.8e-21 105.9 72 72.2
arahy.Tifrunner.gnm1.ann1.96UIHW Arachis hypogaea HOM05D001386 ORTHO05D004014 1.8e-21 105.9 68 72.1
TAR622G1164 Trochodendron aralioides HOM05D001386 ORTHO05D004014 1.8e-21 105.9 72 72.2
BcaC08g43679 Brassica carinata HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
C06p10990 Brassica napus HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
BolC3t21638H Brassica oleracea HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
BraA08t32066Z Brassica rapa HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
BraSC56t46383Z Brassica rapa HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
Lj2g0001549 Lotus japonicus HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
PSO017G5462 Papaver somniferum HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
QL10p004371 Quercus lobata HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 72.2
Sp1g41760 Schrenkiella parvula HOM05D001386 ORTHO05D004014 2.3e-21 105.5 72 70.8
CSS0000356 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 3.0e-21 105.1 72 70.8
Thhalv10011387m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 3.0e-21 105.1 72 70.8
Hma1.2p1_0014F.1_g009690 Hydrangea macrophylla HOM05D001386 ORTHO05D004014 3.0e-21 105.1 72 68.1
PSO782G3915 Papaver somniferum HOM05D001386 ORTHO05D004014 3.0e-21 105.1 72 70.8
Sed0002077 Sechium edule HOM05D001386 ORTHO05D004014 3.0e-21 105.1 70 72.9
arahy.Tifrunner.gnm1.ann1.T2LSLY Arachis hypogaea HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
arahy.Tifrunner.gnm1.ann1.W1WWEB Arachis hypogaea HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
MSTRG.9320 Avicennia marina HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
Eucgr.K02739 Eucalyptus grandis HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
Glyma.17G128400 Glycine max HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 70.8
Lalb_Chr13g0297371 Lupinus albus HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 68.1
PSO478G0383 Papaver somniferum HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
Rhsim08G0188100 Rhododendron simsii HOM05D001386 ORTHO05D004014 3.9e-21 104.8 68 73.5
Thecc.03G126200 Theobroma cacao HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
Zm00001eb016970 Zea mays HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
Zm00001eb394640 Zea mays HOM05D001386 ORTHO05D004014 3.9e-21 104.8 72 69.4
MD14G1159900 Malus domestica HOM05D001386 ORTHO05D004014 5.1e-21 104.4 72 69.4
Lalb_Chr06g0172261 Lupinus albus HOM05D001386 ORTHO05D004014 6.7e-21 104.0 72 68.1
Lalb_Chr07g0183301 Lupinus albus HOM05D001386 ORTHO05D004014 6.7e-21 104.0 72 68.1
Lalb_Chr12g0202131 Lupinus albus HOM05D001386 ORTHO05D004014 6.7e-21 104.0 72 68.1
MD06G1145200 Malus domestica HOM05D001386 ORTHO05D004014 6.7e-21 104.0 72 69.4
Os03g0352300 Oryza sativa ssp. japonica HOM05D001386 ORTHO05D004014 6.7e-21 104.0 72 69.4
Potri.012G095400 Populus trichocarpa HOM05D001386 ORTHO05D004014 6.7e-21 104.0 72 69.4
BcaC06g34700 Brassica carinata HOM05D001386 ORTHO05D019544 8.7e-21 103.6 68 73.5
Dinv04863 Davidia involucrata HOM05D001386 ORTHO05D004014 8.7e-21 103.6 72 69.4
Duzib205G1332 Durio zibethinus HOM05D001386 ORTHO05D004014 8.7e-21 103.6 72 66.7
Potri.015G092900 Populus trichocarpa HOM05D001386 ORTHO05D004014 8.7e-21 103.6 72 69.4
CSS0038009 Camellia sinensis var. sinensis HOM05D001386 ORTHO05D004014 1.1e-20 103.2 72 69.4
Migut.D01257 Erythranthe guttata HOM05D001386 ORTHO05D004014 1.1e-20 103.2 72 69.4
THA.LOC104810267 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 1.1e-20 103.2 72 69.4
FvH4_5g07871 Fragaria vesca HOM05D001386 ORTHO05D004014 1.5e-20 102.8 72 68.1
TWI39G0283 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 1.5e-20 102.8 72 68.1
ATR0686G022 Amborella trichopoda HOM05D001386 ORTHO05D004014 1.9e-20 102.4 72 69.4
BcaB06g25506 Brassica carinata HOM05D001386 ORTHO05D004014 1.9e-20 102.4 68 72.1
Cc04_g10000 Coffea canephora HOM05D001386 ORTHO05D004014 1.9e-20 102.4 68 70.6
Lj9A707T56 Lonicera japonica HOM05D001386 ORTHO05D004014 1.9e-20 102.4 72 68.1
AT1G56110 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 2.5e-20 102.1 72 68.1
BcaB04g16920 Brassica carinata HOM05D001386 ORTHO05D004014 2.5e-20 102.1 72 69.4
BraA03t12939Z Brassica rapa HOM05D001386 ORTHO05D004014 2.5e-20 102.1 68 72.1
TWI14G0111 Tripterygium wilfordii HOM05D001386 ORTHO05D004014 2.5e-20 102.1 72 66.7
BcaB04g18733 Brassica carinata HOM05D001386 ORTHO05D004014 3.3e-20 101.7 68 72.1
BcaB04g21172 Brassica carinata HOM05D001386 ORTHO05D004014 3.3e-20 101.7 68 72.1
C03p45900 Brassica napus HOM05D001386 ORTHO05D004014 3.3e-20 101.7 68 72.1
BolC3t16867H Brassica oleracea HOM05D001386 ORTHO05D004014 3.3e-20 101.7 68 72.1
Manes.06G117900 Manihot esculenta HOM05D001386 ORTHO05D004014 3.3e-20 101.7 72 68.1
Manes.14G053300 Manihot esculenta HOM05D001386 ORTHO05D004014 3.3e-20 101.7 72 68.1
Prupe.5G153500 Prunus persica HOM05D001386 ORTHO05D004014 3.3e-20 101.7 72 65.3
Rhsim08G0188200 Rhododendron simsii HOM05D001386 ORTHO05D019544 3.3e-20 101.7 68 70.6
unitig_22.g5753 Utricularia gibba HOM05D001386 ORTHO05D004014 3.3e-20 101.7 82 65.9
Aqoxy5G03467 Aquilegia oxysepala HOM05D001386 ORTHO05D004014 4.3e-20 101.3 72 69.4
BcaC01g04038 Brassica carinata HOM05D001386 ORTHO05D004014 4.3e-20 101.3 68 70.6
Thhalv10020558m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 4.3e-20 101.3 68 72.1
RcHm_v2.0_Chr7g0190581 Rosa chinensis HOM05D001386 ORTHO05D004014 4.3e-20 101.3 72 66.7
Atru.chr9.1089 Acer truncatum HOM05D001386 ORTHO05D004014 5.6e-20 100.9 72 65.3
Ca_00918_v3 Cicer arietinum L. HOM05D001386 ORTHO05D004014 5.6e-20 100.9 68 69.1
PGR044G2092 Punica granatum HOM05D001386 ORTHO05D004014 5.6e-20 100.9 72 68.1
THA.LOC104816144 Tarenaya hassleriana HOM05D001386 ORTHO05D004014 5.6e-20 100.9 72 69.4
Ciclev10019526m.g Citrus clementina HOM05D001386 ORTHO05D004014 7.4e-20 100.5 72 66.7
DCAR_021613 Daucus carota HOM05D001386 ORTHO05D004014 7.4e-20 100.5 72 68.1
Lj4g0019980 Lotus japonicus HOM05D001386 ORTHO05D004014 7.4e-20 100.5 69 69.6
SHI26313 Sapria himalayana HOM05D001386 ORTHO05D004014 7.4e-20 100.5 72 66.7
A03p37840 Brassica napus HOM05D001386 ORTHO05D004014 9.6e-20 100.1 68 70.6
Glyma.07G102600 Glycine max HOM05D001386 ORTHO05D004014 9.6e-20 100.1 72 66.7
HPP92_024996 Vanilla planifolia HOM05D001386 ORTHO05D004014 9.6e-20 100.1 72 68.1
AT3G12860 Arabidopsis thaliana HOM05D001386 ORTHO05D004014 1.6e-19 99.4 68 70.6
unitig_66.g29100 Utricularia gibba HOM05D001386 ORTHO05D004014 2.1e-19 99.0 82 64.6
unitig_736.g23007 Utricularia gibba HOM05D001386 ORTHO05D004014 2.1e-19 99.0 82 64.6
Sp3g11000 Schrenkiella parvula HOM05D001386 ORTHO05D004014 3.7e-19 98.2 68 69.1
AL3G24530 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 4.8e-19 97.8 65 72.3
Carub.0001s4472 Capsella rubella HOM05D001386 ORTHO05D004014 4.8e-19 97.8 72 66.7
ECA246G0967 Erigeron canadensis HOM05D001386 ORTHO05D004014 4.8e-19 97.8 64 76.6
Pp3c25_6350 Physcomitrium patens HOM05D001386 ORTHO05D004014 4.8e-19 97.8 72 65.3
TAR374G0987 Trochodendron aralioides HOM05D001386 ORTHO05D004014 6.2e-19 97.4 72 68.1
DCAR_016408 Daucus carota HOM05D001386 ORTHO05D004014 8.2e-19 97.1 84 59.5
AL1G64380 Arabidopsis lyrata HOM05D001386 ORTHO05D004014 1.1e-18 96.7 72 66.7
MBI15_g03892_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 1.4e-18 96.3 69 66.7
TPR.G30017 Trifolium pratense HOM05D001386 ORTHO05D004014 1.4e-18 96.3 72 62.5
Medtr4g103790 Medicago truncatula HOM05D001386 ORTHO05D004014 1.8e-18 95.9 72 63.9
Os07g0661800 Oryza sativa ssp. japonica HOM05D001386 ORTHO05D004014 2.4e-18 95.5 72 63.9
Pp3c16_5220 Physcomitrium patens HOM05D001386 ORTHO05D004014 2.4e-18 95.5 72 63.9
Psat4g063120 Pisum sativum HOM05D001386 ORTHO05D004014 5.3e-18 94.4 72 62.5
Carub.0003s1222 Capsella rubella HOM05D001386 ORTHO05D004014 6.9e-18 94.0 72 65.3
MBI13_g04773_MAGBIO Magnolia biondii HOM05D001386 ORTHO05D004014 6.9e-18 94.0 65 69.2
CARHR045860 Cardamine hirsuta HOM05D001386 ORTHO05D004014 9.0e-18 93.6 72 63.9
PSO210G4297 Papaver somniferum HOM05D001386 ORTHO05D004014 2.0e-17 92.4 73 58.9
PSO386G0214 Papaver somniferum HOM05D001386 ORTHO05D004014 3.4e-17 91.7 73 58.9
Thhalv10004082m.g Eutrema salsugineum HOM05D001386 ORTHO05D004014 5.8e-17 90.9 72 65.3
Mapoly0069s0034 Marchantia polymorpha HOM05D001386 ORTHO05D004014 5.8e-17 90.9 70 61.4
A02p36500 Brassica napus HOM05D001386 ORTHO05D004014 2.2e-16 89.0 68 61.8
BraA02t08645Z Brassica rapa HOM05D001386 ORTHO05D004014 2.2e-16 89.0 68 61.8
CARHR087380 Cardamine hirsuta HOM05D001386 ORTHO05D004014 2.9e-16 88.6 68 64.7
Ca_23254_v3 Cicer arietinum L. HOM05D001386 ORTHO05D019544 4.9e-16 87.8 72 61.1
C02p55460 Brassica napus HOM05D001386 ORTHO05D004014 1.1e-15 86.7 68 60.3
BolC2t11602H Brassica oleracea HOM05D001386 ORTHO05D004014 1.1e-15 86.7 68 60.3
BcaB07g30088 Brassica carinata HOM05D001386 ORTHO05D004014 1.4e-15 86.3 68 60.3
SMO353G0194 Selaginella moellendorffii HOM05D001386 ORTHO05D004014 2.5e-15 85.5 74 55.4
Actinidia08862 Actinidia chinensis HOM05D001386 ORTHO05D004014 7.1e-15 84.0 67 65.7
CBR_g149 Chara braunii HOM05D001386 ORTHO05D004014 2.1e-14 82.4 74 51.4
Cre12.g525200 Chlamydomonas reinhardtii HOM05D001386 ORTHO05D004014 3.5e-14 81.6 72 52.8
C02p55380 Brassica napus HOM05D001386 ORTHO05D019544 3.0e-13 78.6 65 58.5
AUR62029640 Chenopodium quinoa HOM05D001386 ORTHO05D004014 5.1e-13 77.8 42 83.3
MCO16G544 Micromonas commoda HOM05D001386 ORTHO05D004014 1.1e-12 76.6 69 53.6
vmacro02034 Vaccinium macrocarpon HOM05D001386 ORTHO05D004014 2.8e-11 72.0 72 55.6
DCAR_020403 Daucus carota HOM05D001386 ORTHO05D000074 5.3e-10 67.8 69 50.7
SalBow2G2673 Salvia bowleyana HOM05D001386 ORTHO05D019544 6.5e-08 60.8 41 68.3
Cfa025876 Carpinus fangiana HOM05D001386 ORTHO05D004014 1.6e-06 56.2 71 40.8
DCAR_030968 Daucus carota HOM05D000547 ORTHO05D000756 7.9e-06 53.9 68 42.6


User provided reference genes

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