Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044820 Amaranthus hybridus HOM05D004726 ORTHO05D005986 0.0e+00 1768.8 826 100.0
EL10Ac2g03214 Beta vulgaris HOM05D004726 ORTHO05D005986 0.0e+00 1464.1 826 81.7
AUR62018238 Chenopodium quinoa HOM05D004726 ORTHO05D005986 0.0e+00 1454.5 804 82.1
AUR62037765 Chenopodium quinoa HOM05D004726 ORTHO05D005986 0.0e+00 1441.4 811 80.9
Hund13042 Selenicereus undatus HOM05D004726 ORTHO05D005986 0.0e+00 1389.4 876 74.1
Sc07g0004390 Simmondsia chinensis HOM05D004726 ORTHO05D005986 0.0e+00 1354.3 836 75.4
Dinv33391 Davidia involucrata HOM05D004726 ORTHO05D005986 0.0e+00 1300.4 824 72.1
Ah.12g055330 Amaranthus hybridus HOM05D004726 ORTHO05D005986 0.0e+00 1295.4 743 80.5
Manes.17G107900 Manihot esculenta HOM05D004726 ORTHO05D005986 0.0e+00 1278.1 793 73.3
QL02p073257 Quercus lobata HOM05D004726 ORTHO05D005986 0.0e+00 1273.8 819 70.6
CSS0005841 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 0.0e+00 1268.1 830 70.6
Lju41A46T85 Lonicera japonica HOM05D004726 ORTHO05D005986 0.0e+00 1265.8 828 70.4
Prupe.3G298800 Prunus persica HOM05D004726 ORTHO05D005986 0.0e+00 1265.8 800 71.8
CSS0026983 Camellia sinensis var. sinensis HOM05D004726 ORTHO05D005986 0.0e+00 1265.4 830 70.6
Cfa007289 Carpinus fangiana HOM05D004726 ORTHO05D005986 0.0e+00 1261.1 788 72.2
Ciclev10014283m.g Citrus clementina HOM05D004726 ORTHO05D005986 0.0e+00 1260.7 794 71.3
RcHm_v2.0_Chr2g0174041 Rosa chinensis HOM05D004726 ORTHO05D005986 0.0e+00 1259.2 787 72.7
COL.COLO4_29260 Corchorus olitorius HOM05D004726 ORTHO05D005986 0.0e+00 1258.8 794 72.5
Sabra16G0217200 Salix brachista HOM05D004726 ORTHO05D005986 0.0e+00 1258.0 772 73.4
Cpa.g.sc130.48 Carica papaya HOM05D004726 ORTHO05D005986 0.0e+00 1257.7 806 72.0
MD09G1018400 Malus domestica HOM05D004726 ORTHO05D005986 0.0e+00 1254.6 827 70.3
MD17G1018800 Malus domestica HOM05D004726 ORTHO05D005986 0.0e+00 1252.7 826 69.6
Nn4g22464 Nelumbo nucifera HOM05D004726 ORTHO05D005986 0.0e+00 1252.7 794 70.8
GSVIVG01003968001 Vitis vinifera HOM05D004726 ORTHO05D005986 0.0e+00 1252.7 801 71.4
Potri.001G336400 Populus trichocarpa HOM05D004726 ORTHO05D005986 0.0e+00 1251.9 779 72.3
FAN05G3820 Fragaria x ananassa HOM05D004726 ORTHO05D005986 0.0e+00 1248.8 789 71.5
THA.LOC104821108 Tarenaya hassleriana HOM05D004726 ORTHO05D005986 0.0e+00 1248.8 782 72.5
Gohir.D09G032300 Gossypium hirsutum HOM05D004726 ORTHO05D005986 0.0e+00 1248.0 802 71.3
FvH4_6g52410 Fragaria vesca HOM05D004726 ORTHO05D005986 0.0e+00 1246.9 794 71.3
Gorai.006G037200 Gossypium raimondii HOM05D004726 ORTHO05D005986 0.0e+00 1245.0 802 71.1
arahy.Tifrunner.gnm1.ann1.2353RE Arachis hypogaea HOM05D004726 ORTHO05D005986 0.0e+00 1244.6 822 70.0
Duzib187G0212 Durio zibethinus HOM05D004726 ORTHO05D005986 0.0e+00 1244.6 799 71.6
Lalb_Chr21g0317631 Lupinus albus HOM05D004726 ORTHO05D005986 0.0e+00 1242.6 824 69.8
Sp3g00330 Schrenkiella parvula HOM05D004726 ORTHO05D005986 0.0e+00 1242.6 802 70.2
arahy.Tifrunner.gnm1.ann1.Q8ZL0R Arachis hypogaea HOM05D004726 ORTHO05D005986 0.0e+00 1242.3 826 69.6
TWI56G1181 Tripterygium wilfordii HOM05D004726 ORTHO05D005986 0.0e+00 1241.5 808 71.0
PSO017G0372 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1240.7 825 69.7
Thecc.04G026000 Theobroma cacao HOM05D004726 ORTHO05D005986 0.0e+00 1240.3 798 71.6
Carub.0003s0033 Capsella rubella HOM05D004726 ORTHO05D005986 0.0e+00 1238.4 787 71.0
Gohir.A09G032200 Gossypium hirsutum HOM05D004726 ORTHO05D005986 0.0e+00 1238.0 813 69.6
CiPaw.03G049600 Carya illinoinensis HOM05D004726 ORTHO05D005986 0.0e+00 1237.2 808 70.4
DCAR_002964 Daucus carota HOM05D004726 ORTHO05D005986 0.0e+00 1237.2 814 69.9
Thhalv10020079m.g Eutrema salsugineum HOM05D004726 ORTHO05D005986 0.0e+00 1235.7 815 69.4
PSO478G3762 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1235.3 830 68.8
AL3G10420 Arabidopsis lyrata HOM05D004726 ORTHO05D005986 0.0e+00 1234.9 804 69.2
Aa31LG5G10860 Aethionema arabicum HOM05D004726 ORTHO05D005986 0.0e+00 1234.2 793 70.9
FAN02G2743 Fragaria x ananassa HOM05D004726 ORTHO05D005986 0.0e+00 1234.2 759 73.3
FAN14G5799 Fragaria x ananassa HOM05D004726 ORTHO05D005986 0.0e+00 1233.4 770 73.0
BraA03t12409Z Brassica rapa HOM05D004726 ORTHO05D005986 0.0e+00 1232.2 805 69.4
AT3G01720 Arabidopsis thaliana HOM05D004726 ORTHO05D005986 0.0e+00 1231.1 787 70.4
A03p32390 Brassica napus HOM05D004726 ORTHO05D005986 0.0e+00 1231.1 805 69.4
Oeu048592.1 Olea europaea HOM05D004726 ORTHO05D005986 0.0e+00 1231.1 808 69.3
BolC3t16213H Brassica oleracea HOM05D004726 ORTHO05D005986 0.0e+00 1229.5 781 71.1
C03p39450 Brassica napus HOM05D004726 ORTHO05D005986 0.0e+00 1226.5 782 71.0
PGR083G2241 Punica granatum HOM05D004726 ORTHO05D005986 0.0e+00 1221.8 791 71.2
Oeu033801.1 Olea europaea HOM05D004726 ORTHO05D005986 0.0e+00 1221.5 826 68.6
CsaV3_3G027570 Cucumis sativus L. HOM05D004726 ORTHO05D005986 0.0e+00 1221.1 840 67.1
ECA238G2031 Erigeron canadensis HOM05D004726 ORTHO05D005986 0.0e+00 1219.9 805 68.9
Aqoxy5G03586 Aquilegia oxysepala HOM05D004726 ORTHO05D005986 0.0e+00 1218.4 810 69.8
Lj2g0016129 Lotus japonicus HOM05D004726 ORTHO05D005986 0.0e+00 1218.4 828 69.1
Ca_04399_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 0.0e+00 1216.1 827 69.6
HanXRQChr14g0451431 Helianthus annuus HOM05D004726 ORTHO05D005986 0.0e+00 1215.7 786 70.5
PSO017G1160 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1215.3 823 67.8
MELO3C014786.2 Cucumis melo HOM05D004726 ORTHO05D005986 0.0e+00 1213.0 844 66.6
Sed0019499 Sechium edule HOM05D004726 ORTHO05D005986 0.0e+00 1211.1 834 66.7
Glyma.05G072300 Glycine max HOM05D004726 ORTHO05D005986 0.0e+00 1209.5 804 69.9
Cc07_g00350 Coffea canephora HOM05D004726 ORTHO05D005986 0.0e+00 1209.1 801 69.2
Sed0012188 Sechium edule HOM05D004726 ORTHO05D005986 0.0e+00 1205.3 846 65.7
CANSAT64G1163 Cannabis sativa HOM05D004726 ORTHO05D005986 0.0e+00 1203.7 816 67.6
SGA_v2.0_scaffold135G34934 Striga asiatica HOM05D004726 ORTHO05D005986 0.0e+00 1203.7 821 67.2
Nitab4.5_0004776g0030 Nicotiana tabacum HOM05D004726 ORTHO05D005986 0.0e+00 1203.0 891 63.3
Solyc05g008260.3 Solanum lycopersicum HOM05D004726 ORTHO05D005986 0.0e+00 1199.5 899 63.0
PGSC0003DMG400030549 Solanum tuberosum HOM05D004726 ORTHO05D005986 0.0e+00 1199.1 892 63.0
Lsat_1_v5_gn_2_93500 Lactuca sativa HOM05D004726 ORTHO05D005986 0.0e+00 1195.3 802 69.2
Sopen05g004100 Solanum pennellii HOM05D004726 ORTHO05D005986 0.0e+00 1194.9 904 62.6
VMungo0464G1053 Vigna mungo HOM05D004726 ORTHO05D005986 0.0e+00 1194.9 791 69.5
Phvul.004G058000 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 0.0e+00 1193.3 792 70.1
Psat1g083400 Pisum sativum HOM05D004726 ORTHO05D005986 0.0e+00 1191.0 816 67.2
SalBow2G0243 Salvia bowleyana HOM05D004726 ORTHO05D005986 0.0e+00 1189.5 827 66.7
Phvul.008G146800 Phaseolus vulgaris HOM05D004726 ORTHO05D005986 0.0e+00 1184.1 808 68.3
PSO386G0103 Papaver somniferum HOM05D004726 ORTHO05D005986 0.0e+00 1182.9 809 68.2
Lj1g0014024 Lotus japonicus HOM05D004726 ORTHO05D005986 0.0e+00 1182.2 779 69.6
ATR0824G115 Amborella trichopoda HOM05D004726 ORTHO05D005986 0.0e+00 1178.7 712 73.9
Glyma.16G063900 Glycine max HOM05D004726 ORTHO05D005986 0.0e+00 1177.9 783 69.3
TPR.G7511 Trifolium pratense HOM05D004726 ORTHO05D005986 0.0e+00 1177.5 836 65.3
Lalb_Chr22g0360561 Lupinus albus HOM05D004726 ORTHO05D005986 0.0e+00 1177.2 811 66.8
HPP92_015461 Vanilla planifolia HOM05D004726 ORTHO05D005986 0.0e+00 1169.5 775 68.4
Migut.G00516 Erythranthe guttata HOM05D004726 ORTHO05D005986 0.0e+00 1168.3 878 62.5
Medtr0044s0180 Medicago truncatula HOM05D004726 ORTHO05D005986 0.0e+00 1168.3 781 68.6
Rhsim05G0094900 Rhododendron simsii HOM05D004726 ORTHO05D005986 0.0e+00 1166.8 875 63.7
TPR.G9063 Trifolium pratense HOM05D004726 ORTHO05D005986 0.0e+00 1163.3 809 67.5
Ca_03877_v3 Cicer arietinum L. HOM05D004726 ORTHO05D005986 0.0e+00 1157.9 722 72.2
Psat0s1369g0120 Pisum sativum HOM05D004726 ORTHO05D005986 0.0e+00 1153.3 803 66.7
ClCG05G012910 Citrullus lanatus HOM05D004726 ORTHO05D005986 0.0e+00 1144.4 823 65.7
BcaC01g04537 Brassica carinata HOM05D004726 ORTHO05D005986 0.0e+00 1140.2 781 67.0
Medtr6g022320 Medicago truncatula HOM05D004726 ORTHO05D005986 0.0e+00 1137.5 957 58.5
Nn3g16582 Nelumbo nucifera HOM05D004726 ORTHO05D005986 0.0e+00 1123.2 808 66.3
SHI03847 Sapria himalayana HOM05D004726 ORTHO05D005986 0.0e+00 1122.1 799 66.0
Os01g0904500 Oryza sativa ssp. japonica HOM05D004726 ORTHO05D005986 0.0e+00 1121.7 789 65.1
Haze_14803 Corylus avellana HOM05D004726 ORTHO05D005986 0.0e+00 1117.1 788 66.0
vmacro05911 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 0.0e+00 1112.1 780 66.3
Duzib147G0777 Durio zibethinus HOM05D004726 ORTHO05D005986 0.0e+00 1106.7 798 65.7
Actinidia36156 Actinidia chinensis HOM05D004726 ORTHO05D005986 0.0e+00 1094.0 742 69.1
vmacro05915 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 0.0e+00 1091.3 650 74.6
Glyma.19G055500 Glycine max HOM05D004726 ORTHO05D005986 0.0e+00 1088.9 721 69.9
SMO117G0207 Selaginella moellendorffii HOM05D004726 ORTHO05D005986 4.9e-298 1027.7 776 62.2
Eucgr.J02276 Eucalyptus grandis HOM05D004726 ORTHO05D005986 1.7e-295 1019.2 789 61.5
AagrBONN_evm.TU.Sc2ySwM_344.876 Anthoceros agrestis HOM05D004726 ORTHO05D005986 5.2e-292 1007.7 725 63.9
Peaxi162Scf00205g00121 Petunia axillaris HOM05D004726 ORTHO05D005986 7.6e-291 1003.8 859 56.9
Mapoly0014s0026 Marchantia polymorpha HOM05D004726 ORTHO05D005986 1.6e-288 996.1 864 55.6
Pp3c10_20040 Physcomitrium patens HOM05D004726 ORTHO05D005986 1.4e-281 973.0 790 58.1
Oeu054664.1 Olea europaea HOM05D004726 ORTHO05D005986 1.4e-252 876.7 707 58.8
Oeu050441.1 Olea europaea HOM05D004726 ORTHO05D005986 3.7e-245 852.0 618 64.2
TAR374G1052 Trochodendron aralioides HOM05D004726 ORTHO05D005986 8.0e-240 834.3 595 66.1
VMungo1383G2700 Vigna mungo HOM05D004726 ORTHO05D005986 1.1e-209 734.2 467 70.9
Pp3c3_33250 Physcomitrium patens HOM05D004726 ORTHO05D005986 1.3e-205 720.7 625 56.0
Atru.BG.103.p Acer truncatum HOM05D004726 ORTHO05D005986 9.5e-185 651.4 398 74.4
Atru.chr3.2443 Acer truncatum HOM05D004726 ORTHO05D005986 8.1e-176 621.7 437 66.1
CARHR075200 Cardamine hirsuta HOM05D004726 ORTHO05D005986 4.6e-163 579.3 429 63.9
TAR622G0871 Trochodendron aralioides HOM05D004726 ORTHO05D005986 5.8e-158 562.4 389 68.4
Atru.chr3.1245 Acer truncatum HOM05D004726 ORTHO05D005986 1.6e-152 544.3 306 77.5
Gohir.D07G232450 Gossypium hirsutum HOM05D004726 ORTHO05D005986 2.0e-137 494.2 615 45.7
Gorai.001G267700 Gossypium raimondii HOM05D004726 ORTHO05D005986 4.1e-135 486.5 615 45.2
VMungo1383G3734 Vigna mungo HOM05D004726 ORTHO05D005986 5.9e-118 429.5 338 60.9
Zm00001eb144300 Zea mays HOM05D004726 ORTHO05D005986 2.6e-105 387.5 238 73.9
Cre12.g520450 Chlamydomonas reinhardtii HOM05D004726 ORTHO05D005986 1.7e-96 358.2 735 32.2
unitig_37.g12422 Utricularia gibba HOM05D004726 ORTHO05D005986 2.4e-87 327.8 338 47.9
Zm00001eb344270 Zea mays HOM05D004726 ORTHO05D005986 6.2e-83 313.2 180 73.9
Psat5g191640 Pisum sativum HOM05D004726 ORTHO05D005986 1.6e-78 298.5 172 76.7
MD04G1153000 Malus domestica HOM05D004726 ORTHO05D005986 2.0e-73 281.6 170 72.4
Zm00001eb350950 Zea mays HOM05D004726 ORTHO05D005986 1.2e-70 272.3 174 67.8
PRCOL_00002880 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 2.0e-65 255.0 327 41.9
CBR_g52139 Chara braunii HOM05D000019 ORTHO05D000002 7.8e-62 243.0 257 45.1
Zm00001eb128230 Zea mays HOM05D004726 ORTHO05D005986 2.4e-58 231.5 123 78.9
Zm00001eb128240 Zea mays HOM05D004726 ORTHO05D005986 2.6e-57 228.0 148 72.3
Zm00001eb389090 Zea mays HOM05D004726 ORTHO05D005986 2.6e-57 228.0 120 78.3
PRCOL_00003197 Prasinoderma coloniale HOM05D004726 ORTHO05D005986 8.4e-56 223.0 332 39.2
Zm00001eb311070 Zea mays HOM05D004726 ORTHO05D005986 1.6e-51 208.8 107 80.4
MCO03G447 Micromonas commoda HOM05D004726 ORTHO05D005986 1.6e-46 192.2 341 34.6
CAN.G1334.7 Capsicum annuum HOM05D004726 ORTHO05D005986 1.4e-31 142.5 87 70.1
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 2.5e-31 141.7 77 79.2
RcHm_v2.0_Chr2g0174051 Rosa chinensis HOM05D004726 ORTHO05D005986 5.5e-31 140.6 145 47.6
TAR622G0354 Trochodendron aralioides HOM05D004726 ORTHO05D005986 1.6e-27 129.0 66 83.3
Psat2g089280 Pisum sativum HOM05D004726 ORTHO05D005986 5.5e-23 114.0 104 53.8
Psat1g035560 Pisum sativum HOM05D000639 ORTHO05D003485 6.1e-22 110.5 84 60.7
HanXRQChr17g0562941 Helianthus annuus HOM05D004726 ORTHO05D005986 1.0e-21 109.8 114 46.5
HanXRQChr13g0417601 Helianthus annuus HOM05D004726 ORTHO05D005986 1.2e-17 96.3 51 82.4
MD04G1152900 Malus domestica HOM05D004726 ORTHO05D005986 4.2e-15 87.8 58 63.8
Psat4g145800 Pisum sativum HOM05D001570 ORTHO05D001566 6.3e-11 73.9 212 25.9
CAN.G669.7 Capsicum annuum HOM05D001570 ORTHO05D001566 7.0e-10 70.5 281 20.6
Pp3c14_17200 Physcomitrium patens HOM05D001570 ORTHO05D001566 7.0e-10 70.5 287 24.4
Nitab4.5_0002992g0050 Nicotiana tabacum HOM05D001570 ORTHO05D001566 1.2e-09 69.7 280 22.1
PGSC0003DMG400015626 Solanum tuberosum HOM05D001570 ORTHO05D001566 1.6e-09 69.3 297 21.9
Nitab4.5_0005958g0010 Nicotiana tabacum HOM05D001570 ORTHO05D001566 2.0e-09 68.9 280 21.4
Solyc08g041770.3 Solanum lycopersicum HOM05D001570 ORTHO05D001566 2.0e-09 68.9 297 21.9
Sopen08g011920 Solanum pennellii HOM05D001570 ORTHO05D001566 2.6e-09 68.6 297 21.9
Ah.10g030270 Amaranthus hybridus HOM05D001570 ORTHO05D001566 3.5e-09 68.2 264 25.4
PRCOL_00006929 Prasinoderma coloniale HOM05D001570 ORTHO05D022356 5.9e-09 67.4 250 24.0
vmacro17548 Vaccinium macrocarpon HOM05D004726 ORTHO05D005986 5.9e-09 67.4 60 50.0
Peaxi162Scf00116g00093 Petunia axillaris HOM05D001570 ORTHO05D001566 7.7e-09 67.0 280 22.1
THA.LOC104816926 Tarenaya hassleriana HOM05D001570 ORTHO05D001566 7.7e-09 67.0 319 22.9
Os06g0180000 Oryza sativa ssp. japonica HOM05D001570 ORTHO05D001566 1.7e-08 65.9 275 21.1
SalBow4G0752 Salvia bowleyana HOM05D001570 ORTHO05D001566 1.7e-08 65.9 289 23.5
SGA_v2.0_scaffold20G09083 Striga asiatica HOM05D001570 ORTHO05D001566 1.7e-08 65.9 285 22.1
HanXRQChr15g0481461 Helianthus annuus HOM05D001570 ORTHO05D001566 2.2e-08 65.5 302 21.5
PRCOL_00001236 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 2.2e-08 65.5 281 23.8
MD03G1165800 Malus domestica HOM05D001570 ORTHO05D001566 3.8e-08 64.7 319 21.6
Phvul.006G014000 Phaseolus vulgaris HOM05D001570 ORTHO05D001566 3.8e-08 64.7 320 20.9
CDE12G0295 Ceratophyllum demersum HOM05D001570 ORTHO05D001566 5.0e-08 64.3 281 23.1
CAN.G1285.3 Capsicum annuum HOM05D004726 ORTHO05D005986 6.5e-08 63.9 46 58.7
Potri.001G275600 Populus trichocarpa HOM05D001570 ORTHO05D001566 6.5e-08 63.9 330 21.8
Migut.A00010 Erythranthe guttata HOM05D001570 ORTHO05D001566 8.5e-08 63.5 301 21.6
Glyma.20G040500 Glycine max HOM05D001570 ORTHO05D001566 8.5e-08 63.5 320 20.9
PRCOL_00000161 Prasinoderma coloniale HOM05D001570 ORTHO05D001566 1.9e-07 62.4 261 24.5
DCAR_006201 Daucus carota HOM05D001570 ORTHO05D001566 4.2e-07 61.2 276 21.4
SMO329G0033 Selaginella moellendorffii HOM05D001570 ORTHO05D001566 4.2e-07 61.2 209 24.9
Glyma.07G231500 Glycine max HOM05D001570 ORTHO05D001566 2.7e-06 58.5 244 21.7
MD08G1068600 Malus domestica HOM05D004726 ORTHO05D005986 8.0e-06 57.0 45 57.8


User provided reference genes

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