Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044760 Amaranthus hybridus HOM05D020966 ORTHO05D023391 0.0e+00 2087.0 1039 100.0
AUR62022070 Chenopodium quinoa HOM05D020966 ORTHO05D023391 0.0e+00 1385.2 1122 64.8
EL10Ac2g03892 Beta vulgaris HOM05D020966 ORTHO05D023391 0.0e+00 1377.5 1111 64.8
AUR62009156 Chenopodium quinoa HOM05D020966 ORTHO05D023391 0.0e+00 1375.1 1122 64.2
Sabra13G0012400 Salix brachista HOM05D020966 ORTHO05D010251 4.3e-33 147.9 1053 21.7
RcHm_v2.0_Chr5g0049171 Rosa chinensis HOM05D016656 ORTHO05D003639 2.0e-30 139.0 464 27.4
FvH4_3g26742 Fragaria vesca HOM05D016656 ORTHO05D003639 9.9e-30 136.7 450 27.3
QL01p013702 Quercus lobata HOM05D009149 ORTHO05D003639 1.4e-23 116.3 452 26.5
Nitab4.5_0001698g0060 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.3e-21 109.8 444 26.1
Sopen09g003880 Solanum pennellii HOM05D008778 ORTHO05D003639 2.2e-21 109.0 514 24.7
PGSC0003DMG400002681 Solanum tuberosum HOM05D008778 ORTHO05D003639 1.1e-20 106.7 509 25.9
Solyc05g010817.1 Solanum lycopersicum HOM05D008778 ORTHO05D003639 1.9e-20 105.9 510 25.1
Peaxi162Scf00820g00119 Petunia axillaris HOM05D008778 ORTHO05D003639 4.2e-20 104.8 513 23.8
CSS0041949 Camellia sinensis var. sinensis HOM05D012914 ORTHO05D003639 7.1e-20 104.0 553 25.5
Nitab4.5_0000663g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 7.1e-20 104.0 518 24.1
Sopen00g007290 Solanum pennellii HOM05D008778 ORTHO05D003639 6.0e-19 100.9 510 25.1
Sopen00g002430 Solanum pennellii HOM05D008778 ORTHO05D003639 7.9e-19 100.5 510 25.1
RcHm_v2.0_Chr2g0152981 Rosa chinensis HOM05D008702 ORTHO05D003639 1.0e-18 100.1 468 24.6
Nitab4.5_0001698g0030 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.3e-18 99.8 511 23.9
RcHm_v2.0_Chr2g0116581 Rosa chinensis HOM05D008702 ORTHO05D003639 1.8e-18 99.4 470 25.3
Peaxi162Scf00820g00117 Petunia axillaris HOM05D008778 ORTHO05D003639 8.7e-18 97.1 446 25.1
RcHm_v2.0_Chr2g0142701 Rosa chinensis HOM05D008702 ORTHO05D003639 8.7e-18 97.1 471 25.5
RcHm_v2.0_Chr2g0138191 Rosa chinensis HOM05D008702 ORTHO05D003639 1.9e-17 95.9 472 24.4
Cc00_g19240 Coffea canephora HOM05D009149 ORTHO05D003639 2.2e-16 92.4 459 22.9
Nitab4.5_0001698g0040 Nicotiana tabacum HOM05D008778 ORTHO05D003639 1.4e-15 89.7 562 24.2
Sc03g0005210 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.2e-14 86.7 304 27.3
Nitab4.5_0000663g0010 Nicotiana tabacum HOM05D008778 ORTHO05D003639 3.4e-14 85.1 559 23.6
RcHm_v2.0_Chr5g0004321 Rosa chinensis HOM05D008702 ORTHO05D003639 7.6e-14 84.0 304 25.7
EL10Ac9g22437 Beta vulgaris HOM05D020966 ORTHO05D023391 2.2e-13 82.4 165 32.7
Sc05g0003960 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.5e-13 80.9 251 29.9
Peaxi162Scf00820g00045 Petunia axillaris HOM05D008778 ORTHO05D003639 6.1e-11 74.3 373 23.1
RcHm_v2.0_Chr1g0321631 Rosa chinensis HOM05D008702 ORTHO05D003639 8.8e-10 70.5 283 26.1
Sc17g0003520 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.1e-09 70.1 84 45.2
FAN25G0588 Fragaria x ananassa HOM05D016656 ORTHO05D003639 3.3e-09 68.6 260 26.2
CSS0044889 Camellia sinensis var. sinensis HOM05D008778 ORTHO05D003639 4.3e-09 68.2 324 26.2
FvH4_1g29795 Fragaria vesca HOM05D009149 ORTHO05D003639 4.3e-09 68.2 252 23.0
Oeu057837.1 Olea europaea HOM05D007843 ORTHO05D003639 1.7e-08 66.2 310 24.2
Sc11g0004150 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.8e-08 64.7 84 41.7
Sed0015741 Sechium edule HOM05D001371 ORTHO05D001319 8.2e-08 63.9 247 26.3
Sc05g0005050 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.4e-07 63.2 89 40.4
Sc24g0001190 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.4e-07 63.2 94 38.3
Sc07g0004510 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.8e-07 62.8 84 40.5
Sc18g0005300 Simmondsia chinensis HOM05D007912 ORTHO05D010251 1.8e-07 62.8 216 29.2
Rhsim06G0215500 Rhododendron simsii HOM05D001371 ORTHO05D001319 2.4e-07 62.4 243 28.4
Sc02g0004970 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.4e-07 62.4 93 38.7
Sc08g0005440 Simmondsia chinensis HOM05D007912 ORTHO05D010251 6.9e-07 60.8 97 38.1
Duzib213G0305 Durio zibethinus HOM05D001371 ORTHO05D001319 2.0e-06 59.3 244 25.8
Sc06g0004250 Simmondsia chinensis HOM05D007912 ORTHO05D010251 2.6e-06 58.9 67 43.3
Sc14g0002490 Simmondsia chinensis HOM05D007912 ORTHO05D010251 3.4e-06 58.5 91 37.4
Sc08g0004760 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.5e-06 58.2 62 46.8
Sc22g0004320 Simmondsia chinensis HOM05D007912 ORTHO05D010251 4.5e-06 58.2 72 40.3
Rhsim06G0151600 Rhododendron simsii HOM05D001371 ORTHO05D001319 5.9e-06 57.8 240 27.5
Eucgr.F03451 Eucalyptus grandis HOM05D001371 ORTHO05D001319 7.7e-06 57.4 255 22.7


User provided reference genes

Program Settings