Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044700 Amaranthus hybridus HOM05D003538 ORTHO05D004376 1.3e-304 1048.9 524 100.0
AUR62009165 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.0e-195 687.2 526 68.6
AUR62022058 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.6e-193 679.9 514 69.1
AUR62043933 Chenopodium quinoa HOM05D003538 ORTHO05D004376 1.6e-193 679.9 514 69.1
Hund03347 Selenicereus undatus HOM05D003538 ORTHO05D004376 8.3e-150 534.6 513 56.5
EL10Ac2g03914 Beta vulgaris HOM05D003538 ORTHO05D004376 4.9e-142 508.8 408 65.9
Sc23g0005570 Simmondsia chinensis HOM05D003538 ORTHO05D004376 1.1e-117 427.9 499 48.3
TAR626G0286 Trochodendron aralioides HOM05D003538 ORTHO05D004376 1.5e-90 337.8 516 39.9
Actinidia30305 Actinidia chinensis HOM05D003538 ORTHO05D004376 6.7e-83 312.4 494 40.3
Hma1.2p1_0482F.1_g162640 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 9.6e-82 308.5 519 39.5
QL02p001408 Quercus lobata HOM05D003538 ORTHO05D004376 1.6e-81 307.8 505 39.0
CANSAT25G2654 Cannabis sativa HOM05D003538 ORTHO05D004376 1.8e-80 304.3 526 35.2
Gohir.A05G043100 Gossypium hirsutum HOM05D003538 ORTHO05D004376 6.9e-80 302.4 525 36.8
Potri.006G230900 Populus trichocarpa HOM05D003538 ORTHO05D004376 9.0e-80 302.0 516 37.6
CSS0001901 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 2.6e-79 300.4 494 37.7
Atru.chr7.1041 Acer truncatum HOM05D003538 ORTHO05D004376 1.7e-78 297.7 518 34.9
Gorai.009G045900 Gossypium raimondii HOM05D003538 ORTHO05D004376 2.9e-78 297.0 518 35.9
Duzib168G2161 Durio zibethinus HOM05D003538 ORTHO05D004376 4.9e-78 296.2 538 35.9
COL.COLO4_21041 Corchorus olitorius HOM05D003538 ORTHO05D004376 1.9e-77 294.3 520 37.1
Actinidia01196 Actinidia chinensis HOM05D003538 ORTHO05D004376 4.2e-77 293.1 504 38.9
Nn6g35422 Nelumbo nucifera HOM05D003538 ORTHO05D004376 7.9e-76 288.9 504 35.9
PGR044G1201 Punica granatum HOM05D003538 ORTHO05D004376 2.3e-75 287.3 502 36.3
Lj5g0027111 Lotus japonicus HOM05D003538 ORTHO05D004376 2.5e-74 283.9 512 35.2
Ciclev10007991m.g Citrus clementina HOM05D003538 ORTHO05D004376 3.1e-72 276.9 518 34.6
CiPaw.16G029300 Carya illinoinensis HOM05D003538 ORTHO05D004376 1.2e-71 275.0 529 34.4
Sabra06G0179100 Salix brachista HOM05D003538 ORTHO05D004376 2.0e-71 274.2 543 35.0
Aqoxy7G04069 Aquilegia oxysepala HOM05D003538 ORTHO05D004376 2.6e-71 273.9 510 34.7
Thecc.09G052400 Theobroma cacao HOM05D003538 ORTHO05D004376 4.5e-71 273.1 397 41.8
Gohir.D05G044800 Gossypium hirsutum HOM05D003538 ORTHO05D004376 7.6e-71 272.3 392 40.1
Eucgr.C03022 Eucalyptus grandis HOM05D003538 ORTHO05D004376 1.7e-70 271.2 518 34.6
Rhsim11G0045200 Rhododendron simsii HOM05D003538 ORTHO05D004376 1.7e-70 271.2 490 37.1
Sed0023083 Sechium edule HOM05D003538 ORTHO05D004376 1.7e-70 271.2 493 34.7
Lalb_Chr22g0356041 Lupinus albus HOM05D003538 ORTHO05D004376 7.2e-69 265.8 506 33.6
Nitab4.5_0001584g0040 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.2e-68 265.0 519 35.8
MELO3C016862.2 Cucumis melo HOM05D003538 ORTHO05D004376 2.1e-68 264.2 498 34.1
CsaV3_4G035550 Cucumis sativus L. HOM05D003538 ORTHO05D004376 3.6e-68 263.5 498 33.7
TWI32G0386 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 4.6e-68 263.1 501 32.3
Peaxi162Scf00136g00059 Petunia axillaris HOM05D003538 ORTHO05D004376 6.1e-68 262.7 507 35.5
Lj7C279G1 Lonicera japonica HOM05D003538 ORTHO05D004376 3.9e-67 260.0 495 36.8
PSO210G5813 Papaver somniferum HOM05D003538 ORTHO05D004376 5.1e-67 259.6 519 34.9
PSO210G6318 Papaver somniferum HOM05D003538 ORTHO05D004376 6.7e-67 259.2 527 35.1
ClCG05G017780 Citrullus lanatus HOM05D003538 ORTHO05D004376 8.8e-67 258.8 516 33.1
Nitab4.5_0001179g0130 Nicotiana tabacum HOM05D003538 ORTHO05D004376 1.1e-66 258.5 514 35.8
MSTRG.11666 Avicennia marina HOM05D003538 ORTHO05D004376 2.8e-65 253.8 517 34.2
arahy.Tifrunner.gnm1.ann1.IE7M3R Arachis hypogaea HOM05D003538 ORTHO05D004376 4.8e-65 253.1 540 32.2
Glyma.14G093500 Glycine max HOM05D003538 ORTHO05D004376 2.0e-63 247.7 498 32.9
Cc08_g10420 Coffea canephora HOM05D003538 ORTHO05D004376 2.6e-63 247.3 453 35.5
MBI03_g13775_MAGBIO Magnolia biondii HOM05D003538 ORTHO05D004376 4.5e-63 246.5 497 33.8
Sopen08g019050 Solanum pennellii HOM05D003538 ORTHO05D004376 4.5e-63 246.5 505 34.7
TPR.G13110 Trifolium pratense HOM05D003538 ORTHO05D004376 1.3e-62 245.0 504 32.5
Phvul.001G034000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 2.2e-62 244.2 507 32.5
AL6G22530 Arabidopsis lyrata HOM05D003538 ORTHO05D004376 5.0e-62 243.0 508 35.0
Glyma.17G230200 Glycine max HOM05D003538 ORTHO05D004376 6.5e-62 242.7 499 32.9
Solyc08g065440.4 Solanum lycopersicum HOM05D003538 ORTHO05D004376 1.1e-61 241.9 517 34.6
Manes.03G047000 Manihot esculenta HOM05D003538 ORTHO05D004376 1.9e-61 241.1 395 34.7
VMungo0647G0716 Vigna mungo HOM05D003538 ORTHO05D004376 2.5e-61 240.7 522 32.6
ClCG03G015790 Citrullus lanatus HOM05D003538 ORTHO05D004376 4.2e-61 240.0 513 32.7
Thhalv10013348m.g Eutrema salsugineum HOM05D003538 ORTHO05D004376 5.5e-61 239.6 509 36.7
Dinv36743 Davidia involucrata HOM05D003538 ORTHO05D004376 9.4e-61 238.8 504 31.5
Migut.A00144 Erythranthe guttata HOM05D003538 ORTHO05D004376 2.1e-60 237.7 515 33.2
Ca_13176_v3 Cicer arietinum L. HOM05D003538 ORTHO05D004376 6.7e-59 232.6 542 30.8
Cfa003115 Carpinus fangiana HOM05D003538 ORTHO05D004376 1.5e-58 231.5 504 32.1
Medtr1g016740 Medicago truncatula HOM05D003538 ORTHO05D004376 2.0e-58 231.1 518 31.7
MELO3C015449.2 Cucumis melo HOM05D003538 ORTHO05D004376 3.3e-58 230.3 465 33.1
Aa31LG3G15420 Aethionema arabicum HOM05D003538 ORTHO05D004376 4.4e-58 229.9 490 34.7
QL02p063126 Quercus lobata HOM05D003538 ORTHO05D004376 5.7e-58 229.6 509 32.8
Haze_25885 Corylus avellana HOM05D003538 ORTHO05D004376 7.4e-58 229.2 413 35.4
CARHR201410 Cardamine hirsuta HOM05D003538 ORTHO05D004376 4.8e-57 226.5 483 34.4
Haze_18202 Corylus avellana HOM05D003538 ORTHO05D004376 6.3e-57 226.1 554 31.4
CsaV3_1G040220 Cucumis sativus L. HOM05D003538 ORTHO05D004376 8.2e-57 225.7 415 34.5
AT5G11780 Arabidopsis thaliana HOM05D003538 ORTHO05D004376 6.9e-56 222.6 486 34.2
Hma1.2p1_0798F.1_g219590 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.9e-56 222.6 515 33.4
Hma1.2p1_1074F.1_g254274 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 6.9e-56 222.6 515 33.4
arahy.Tifrunner.gnm1.ann1.QX44E6 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.6e-55 220.7 585 29.4
Sed0013907 Sechium edule HOM05D003538 ORTHO05D004376 2.6e-55 220.7 510 31.0
Dinv27976 Davidia involucrata HOM05D003538 ORTHO05D004376 3.4e-55 220.3 263 45.2
GSVIVG01015234001 Vitis vinifera HOM05D003538 ORTHO05D004376 2.9e-54 217.2 412 34.5
Rhsim03G0234300 Rhododendron simsii HOM05D003538 ORTHO05D004376 6.5e-54 216.1 510 31.4
Carub.0006s1031 Capsella rubella HOM05D003538 ORTHO05D004376 8.5e-54 215.7 484 33.9
Lj7A672T62 Lonicera japonica HOM05D003538 ORTHO05D004376 1.4e-53 214.9 470 34.5
Thecc.09G092900 Theobroma cacao HOM05D003538 ORTHO05D004376 1.4e-53 214.9 496 31.7
Prupe.7G213400 Prunus persica HOM05D003538 ORTHO05D004376 1.9e-53 214.5 496 30.2
CsaV3_UNG062480 Cucumis sativus L. HOM05D003538 ORTHO05D004376 1.6e-52 211.5 441 32.4
Sed0020375 Sechium edule HOM05D003538 ORTHO05D004376 6.1e-52 209.5 410 33.4
HPP92_009156 Vanilla planifolia HOM05D003538 ORTHO05D004376 6.1e-52 209.5 496 30.2
Duzib168G1022 Durio zibethinus HOM05D003538 ORTHO05D004376 1.0e-51 208.8 396 33.6
Actinidia29888 Actinidia chinensis HOM05D003538 ORTHO05D004376 3.9e-51 206.8 412 33.7
vmacro00153 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 3.9e-51 206.8 452 33.0
Atru.chr7.1545 Acer truncatum HOM05D003538 ORTHO05D004376 6.7e-51 206.1 404 32.4
Manes.03G031601 Manihot esculenta HOM05D003538 ORTHO05D004376 2.0e-50 204.5 399 31.8
CiPaw.04G152000 Carya illinoinensis HOM05D003538 ORTHO05D004376 4.4e-50 203.4 504 31.5
Lsat_1_v5_gn_3_24260 Lactuca sativa HOM05D003538 ORTHO05D004376 8.2e-49 199.1 414 34.8
TWI34G1305 Tripterygium wilfordii HOM05D003538 ORTHO05D004376 2.4e-48 197.6 512 30.5
Lsat_1_v5_gn_8_87540 Lactuca sativa HOM05D003538 ORTHO05D004376 5.3e-48 196.4 496 30.0
HanXRQChr02g0044571 Helianthus annuus HOM05D003538 ORTHO05D004376 9.1e-48 195.7 513 30.2
Ciclev10007935m.g Citrus clementina HOM05D003538 ORTHO05D004376 1.6e-47 194.9 492 27.4
PGSC0003DMG400002203 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.5e-47 193.7 430 32.6
CSS0008213 Camellia sinensis var. sinensis HOM05D003538 ORTHO05D004376 1.0e-46 192.2 529 29.5
Gohir.D07G010500 Gossypium hirsutum HOM05D003538 ORTHO05D004376 1.3e-46 191.8 444 30.9
Gorai.001G010900 Gossypium raimondii HOM05D003538 ORTHO05D004376 1.3e-46 191.8 444 30.9
CANSAT56G3152 Cannabis sativa HOM05D003538 ORTHO05D004376 1.7e-46 191.4 421 32.5
MD02G1074500 Malus domestica HOM05D003538 ORTHO05D004376 1.7e-46 191.4 503 30.4
Eucgr.C03664 Eucalyptus grandis HOM05D003538 ORTHO05D004376 8.5e-46 189.1 426 31.5
FvH4_1g07060 Fragaria vesca HOM05D003538 ORTHO05D004376 8.5e-46 189.1 399 32.3
RcHm_v2.0_Chr2g0092961 Rosa chinensis HOM05D003538 ORTHO05D004376 8.5e-46 189.1 485 30.9
SalBow1G0256 Salvia bowleyana HOM05D003538 ORTHO05D004376 2.5e-45 187.6 512 27.9
Glyma.07G128300 Glycine max HOM05D003538 ORTHO05D004376 3.2e-45 187.2 496 27.6
FAN19G1852 Fragaria x ananassa HOM05D003538 ORTHO05D004376 5.5e-45 186.4 374 32.9
CDE02G0844 Ceratophyllum demersum HOM05D003538 ORTHO05D004376 9.4e-45 185.7 460 28.0
Manes.03G034901 Manihot esculenta HOM05D003538 ORTHO05D004376 1.6e-44 184.9 410 30.0
Cc06_g11090 Coffea canephora HOM05D003538 ORTHO05D004376 3.6e-44 183.7 401 30.4
BolC9t59332H Brassica oleracea HOM05D003538 ORTHO05D004376 2.3e-43 181.0 508 31.9
BraA10t44658Z Brassica rapa HOM05D003538 ORTHO05D004376 2.3e-43 181.0 508 32.7
Medtr6g091790 Medicago truncatula HOM05D003538 ORTHO05D004376 4.0e-43 180.3 526 28.3
SalBow4G1879 Salvia bowleyana HOM05D003538 ORTHO05D004376 4.0e-43 180.3 481 28.3
A10p25960 Brassica napus HOM05D003538 ORTHO05D004376 5.2e-43 179.9 508 32.9
Phvul.004G172000 Phaseolus vulgaris HOM05D003538 ORTHO05D004376 5.2e-43 179.9 496 29.0
Glyma.01G003600 Glycine max HOM05D003538 ORTHO05D004376 2.6e-42 177.6 496 28.0
Zm00001eb161340 Zea mays HOM05D003538 ORTHO05D004376 2.6e-42 177.6 517 29.0
PGSC0003DMG400008432 Solanum tuberosum HOM05D003538 ORTHO05D004376 3.3e-42 177.2 498 26.3
Sopen07g015920 Solanum pennellii HOM05D003538 ORTHO05D004376 5.7e-42 176.4 485 27.2
VMungo0464G1250 Vigna mungo HOM05D003538 ORTHO05D004376 7.5e-42 176.0 497 28.8
BcaC04g19195 Brassica carinata HOM05D003538 ORTHO05D004376 9.7e-42 175.6 498 31.3
HanXRQChr06g0173831 Helianthus annuus HOM05D003538 ORTHO05D004376 6.3e-41 172.9 418 31.3
C09p65040 Brassica napus HOM05D003538 ORTHO05D004376 1.1e-40 172.2 500 30.8
FAN26G3060 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.8e-40 171.4 472 29.2
Lalb_Chr24g0393871 Lupinus albus HOM05D003538 ORTHO05D004376 1.8e-40 171.4 404 30.7
arahy.Tifrunner.gnm1.ann1.X6QCD5 Arachis hypogaea HOM05D003538 ORTHO05D004376 2.4e-40 171.0 401 28.7
arahy.Tifrunner.gnm1.ann1.60DKDN Arachis hypogaea HOM05D003538 ORTHO05D004376 4.1e-40 170.2 503 27.2
Lj2g0016122 Lotus japonicus HOM05D003538 ORTHO05D004376 4.5e-39 166.8 501 28.7
vmacro06276 Vaccinium macrocarpon HOM05D003538 ORTHO05D004376 2.9e-38 164.1 557 27.6
THA.LOC104814609 Tarenaya hassleriana HOM05D003538 ORTHO05D004376 1.5e-37 161.8 377 31.3
Gohir.A07G010200 Gossypium hirsutum HOM05D003538 ORTHO05D004376 3.2e-37 160.6 395 29.9
MSTRG.26404 Avicennia marina HOM05D003538 ORTHO05D004376 4.2e-37 160.2 513 26.7
ECA236G1610 Erigeron canadensis HOM05D003538 ORTHO05D004376 1.6e-36 158.3 382 34.8
Cpa.g.sc7.247 Carica papaya HOM05D003538 ORTHO05D004376 3.6e-36 157.1 278 37.1
Zm00001eb357710 Zea mays HOM05D003538 ORTHO05D004376 3.6e-36 157.1 509 27.3
FAN23G1479 Fragaria x ananassa HOM05D003538 ORTHO05D004376 6.1e-36 156.4 487 28.5
Manes.03G031262 Manihot esculenta HOM05D003538 ORTHO05D004376 1.0e-35 155.6 348 31.6
Medtr6g091900 Medicago truncatula HOM05D003538 ORTHO05D004376 1.4e-35 155.2 400 30.8
Manes.03G030833 Manihot esculenta HOM05D003538 ORTHO05D004376 1.7e-33 148.3 277 34.3
GSVIVG01035358001 Vitis vinifera HOM05D003538 ORTHO05D004376 1.7e-33 148.3 249 41.4
SalBow4G0582 Salvia bowleyana HOM05D003538 ORTHO05D004376 3.7e-33 147.1 259 34.4
Manes.03G031366 Manihot esculenta HOM05D003538 ORTHO05D004376 6.3e-33 146.4 277 33.9
Aa31LG8G16630 Aethionema arabicum HOM05D003538 ORTHO05D004376 1.7e-30 138.3 517 25.5
SGA_v2.0_scaffold734G53534 Striga asiatica HOM05D003538 ORTHO05D004376 2.9e-30 137.5 264 34.1
Medtr6g092160 Medicago truncatula HOM05D003538 ORTHO05D004376 5.7e-26 123.2 282 29.1
unitig_699.g19305 Utricularia gibba HOM05D003538 ORTHO05D004376 2.8e-25 120.9 397 25.4
Sc18g0001860 Simmondsia chinensis HOM05D003538 ORTHO05D004376 2.4e-24 117.9 262 30.5
Psat6g019320 Pisum sativum HOM05D003538 ORTHO05D004376 4.1e-24 117.1 374 25.1
EL10Ac2g03913 Beta vulgaris HOM05D003538 ORTHO05D004376 1.0e-22 112.5 102 62.7
ECA246G1935 Erigeron canadensis HOM05D003538 ORTHO05D004376 2.9e-22 110.9 271 32.1
Oeu018651.1 Olea europaea HOM05D003538 ORTHO05D004376 1.5e-18 98.6 247 31.2
Os01g0600300 Oryza sativa ssp. japonica HOM05D003538 ORTHO05D004376 2.0e-18 98.2 269 29.0
ATR0789G162 Amborella trichopoda HOM05D003538 ORTHO05D004376 8.3e-17 92.8 291 25.8
FAN26G2436 Fragaria x ananassa HOM05D003538 ORTHO05D004376 1.1e-16 92.4 229 28.8
SEGI_33762 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 4.1e-16 90.5 305 28.9
DCAR_011998 Daucus carota HOM05D003538 ORTHO05D004376 1.2e-15 89.0 252 27.4
Solyc07g032260.3 Solanum lycopersicum HOM05D003538 ORTHO05D004376 5.0e-14 83.6 241 28.6
Eucgr.L03304 Eucalyptus grandis HOM05D003538 ORTHO05D004376 7.3e-13 79.7 183 31.7
Hma1.2p1_0798F.1_g219600 Hydrangea macrophylla HOM05D003538 ORTHO05D004376 4.0e-11 73.9 226 29.2
DCAR_004434 Daucus carota HOM05D003538 ORTHO05D004376 2.0e-10 71.6 148 33.1
Oeu039611.1 Olea europaea HOM05D003538 ORTHO05D004376 2.0e-10 71.6 222 25.7
SGA_v2.0_scaffold187G40255 Striga asiatica HOM05D003538 ORTHO05D004376 1.7e-09 68.6 132 28.0
ATR0789G133 Amborella trichopoda HOM05D003538 ORTHO05D004376 3.7e-09 67.4 142 32.4
Thecc.06G128700 Theobroma cacao HOM05D003538 ORTHO05D004376 4.6e-07 60.5 138 31.9
SEGI_10797 Sequoiadendron giganteum HOM05D003538 ORTHO05D004376 1.3e-06 58.9 107 36.4
Medtr6g092190 Medicago truncatula HOM05D003538 ORTHO05D004376 3.9e-06 57.4 259 24.7


User provided reference genes

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