Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044630 Amaranthus hybridus HOM05D004579 ORTHO05D005376 8.6e-129 463.8 251 100.0
EL10Ac2g03929 Beta vulgaris HOM05D004579 ORTHO05D005376 5.0e-68 261.9 243 63.8
AUR62022041 Chenopodium quinoa HOM05D004579 ORTHO05D005376 8.2e-55 218.0 172 64.5
Hund03357 Selenicereus undatus HOM05D004579 ORTHO05D005376 2.2e-52 209.9 286 49.7
MSTRG.11672 Avicennia marina HOM05D004579 ORTHO05D005376 1.4e-51 207.2 256 51.2
CSS0030937 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.5e-51 206.5 254 51.6
SGA_v2.0_scaffold88G27218 Striga asiatica HOM05D004579 ORTHO05D005376 2.6e-48 196.4 243 52.3
Migut.A00154 Erythranthe guttata HOM05D004579 ORTHO05D005376 7.4e-48 194.9 247 51.8
Prupe.1G414900 Prunus persica HOM05D004579 ORTHO05D005376 9.7e-48 194.5 261 51.0
Hma1.2p1_1266F.1_g271430 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 1.7e-47 193.7 247 52.2
Sc09g0009680 Simmondsia chinensis HOM05D004579 ORTHO05D005376 2.8e-47 193.0 256 52.7
GSVIVG01035344001 Vitis vinifera HOM05D004579 ORTHO05D005376 2.8e-47 193.0 178 60.1
Dinv23423 Davidia involucrata HOM05D004579 ORTHO05D005376 6.3e-47 191.8 259 52.1
Peaxi162Scf00436g00719 Petunia axillaris HOM05D004579 ORTHO05D005376 5.3e-46 188.7 241 51.5
Nitab4.5_0000359g0090 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.0e-46 188.3 239 54.0
Nitab4.5_0008290g0030 Nicotiana tabacum HOM05D004579 ORTHO05D005376 7.0e-46 188.3 244 54.9
Solyc04g080350.4 Solanum lycopersicum HOM05D004579 ORTHO05D005376 9.1e-46 188.0 244 52.9
Gorai.009G046700 Gossypium raimondii HOM05D004579 ORTHO05D005376 1.2e-45 187.6 244 51.6
Actinidia14703 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.0e-45 186.8 174 58.0
Gohir.D05G045500 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.0e-45 186.8 248 52.4
Nitab4.5_0006174g0020 Nicotiana tabacum HOM05D004579 ORTHO05D005376 2.0e-45 186.8 240 54.2
arahy.Tifrunner.gnm1.ann1.C5JVH4 Arachis hypogaea HOM05D004579 ORTHO05D005376 2.6e-45 186.4 265 46.8
Glyma.04G049800 Glycine max HOM05D004579 ORTHO05D005376 3.5e-45 186.0 261 48.7
Duzib168G1792 Durio zibethinus HOM05D004579 ORTHO05D005376 4.5e-45 185.7 251 47.0
Medtr1g016630 Medicago truncatula HOM05D004579 ORTHO05D005376 5.9e-45 185.3 262 48.9
Psat5g036520 Pisum sativum HOM05D004579 ORTHO05D005376 5.9e-45 185.3 253 49.8
Atru.chr7.2020 Acer truncatum HOM05D004579 ORTHO05D005376 1.0e-44 184.5 251 45.0
Ca_15870_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 1.0e-44 184.5 258 46.9
PGSC0003DMG400005151 Solanum tuberosum HOM05D004579 ORTHO05D005376 1.0e-44 184.5 246 51.6
Dinv27966 Davidia involucrata HOM05D004579 ORTHO05D005376 1.7e-44 183.7 243 49.0
Hund19474 Selenicereus undatus HOM05D004579 ORTHO05D005376 1.7e-44 183.7 368 40.5
CAN.G1226.13 Capsicum annuum HOM05D004579 ORTHO05D005376 2.2e-44 183.3 244 48.4
DCAR_019057 Daucus carota HOM05D004579 ORTHO05D005376 2.2e-44 183.3 254 48.0
Sopen04g033940 Solanum pennellii HOM05D004579 ORTHO05D005376 2.2e-44 183.3 242 52.1
TWI34G1837 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.2e-44 183.3 262 44.7
Cc08_g10350 Coffea canephora HOM05D004579 ORTHO05D005376 2.9e-44 183.0 247 51.4
Thecc.09G051200 Theobroma cacao HOM05D004579 ORTHO05D005376 5.0e-44 182.2 245 49.8
FAN15G2153 Fragaria x ananassa HOM05D004579 ORTHO05D005376 6.5e-44 181.8 257 44.7
Glyma.06G050800 Glycine max HOM05D004579 ORTHO05D005376 6.5e-44 181.8 248 48.0
arahy.Tifrunner.gnm1.ann1.XC2JTE Arachis hypogaea HOM05D004579 ORTHO05D005376 8.5e-44 181.4 259 45.9
Duzib187G0056 Durio zibethinus HOM05D004579 ORTHO05D005376 8.5e-44 181.4 248 49.6
FAN27G3258 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.5e-43 180.6 257 44.7
HanXRQChr08g0226451 Helianthus annuus HOM05D004579 ORTHO05D005376 1.5e-43 180.6 248 52.0
HanXRQChr08g0226601 Helianthus annuus HOM05D004579 ORTHO05D005376 1.5e-43 180.6 248 52.0
FAN24G0041 Fragaria x ananassa HOM05D004579 ORTHO05D005376 1.9e-43 180.3 258 45.0
Manes.03G046600 Manihot esculenta HOM05D004579 ORTHO05D005376 1.9e-43 180.3 253 44.7
SalBow4G3199 Salvia bowleyana HOM05D004579 ORTHO05D005376 1.9e-43 180.3 255 49.4
FAN20G3218 Fragaria x ananassa HOM05D004579 ORTHO05D005376 4.2e-43 179.1 257 45.9
unitig_736.g22340 Utricularia gibba HOM05D004579 ORTHO05D005376 5.5e-43 178.7 247 44.5
MELO3C022510.2 Cucumis melo HOM05D004579 ORTHO05D005376 7.2e-43 178.3 254 46.9
TPR.G13109 Trifolium pratense HOM05D004579 ORTHO05D005376 1.2e-42 177.6 258 49.6
Aa31LG8G7240 Aethionema arabicum HOM05D004579 ORTHO05D005376 2.7e-42 176.4 247 47.0
FvH4_2g32180 Fragaria vesca HOM05D004579 ORTHO05D005376 2.7e-42 176.4 258 44.2
QL07p000612 Quercus lobata HOM05D004579 ORTHO05D005376 2.7e-42 176.4 257 45.1
Cfa017933 Carpinus fangiana HOM05D004579 ORTHO05D005376 3.6e-42 176.0 248 49.2
Lsat_1_v5_gn_6_7421 Lactuca sativa HOM05D004579 ORTHO05D005376 3.6e-42 176.0 253 47.4
CARHR096140 Cardamine hirsuta HOM05D004579 ORTHO05D005376 1.0e-41 174.5 254 47.6
Thhalv10021403m.g Eutrema salsugineum HOM05D004579 ORTHO05D005376 1.0e-41 174.5 249 45.8
Rhsim07G0143600 Rhododendron simsii HOM05D004579 ORTHO05D005376 1.4e-41 174.1 263 47.1
Gohir.D07G022900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.3e-41 173.3 249 43.8
QL02p103256 Quercus lobata HOM05D004579 ORTHO05D005376 2.3e-41 173.3 249 46.2
HanXRQChr09g0251171 Helianthus annuus HOM05D004579 ORTHO05D005376 3.0e-41 172.9 229 49.8
BcaC05g28330 Brassica carinata HOM05D004579 ORTHO05D005376 4.0e-41 172.6 264 43.9
BolC5t33107H Brassica oleracea HOM05D004579 ORTHO05D005376 4.0e-41 172.6 264 43.9
Potri.006G232800 Populus trichocarpa HOM05D004579 ORTHO05D005376 4.0e-41 172.6 262 47.3
Ca_02416_v3 Cicer arietinum L. HOM05D004579 ORTHO05D005376 6.7e-41 171.8 253 48.2
Oeu037326.2 Olea europaea HOM05D004579 ORTHO05D005376 6.7e-41 171.8 286 44.4
AT3G20430 Arabidopsis thaliana HOM05D004579 ORTHO05D005376 1.1e-40 171.0 263 46.0
Psat6g019640 Pisum sativum HOM05D004579 ORTHO05D005376 1.5e-40 170.6 262 43.5
CANSAT25G0619 Cannabis sativa HOM05D004579 ORTHO05D005376 2.0e-40 170.2 250 50.0
AUR62009186 Chenopodium quinoa HOM05D004579 ORTHO05D005376 2.6e-40 169.9 249 44.6
Gohir.A05G043900 Gossypium hirsutum HOM05D004579 ORTHO05D005376 2.6e-40 169.9 276 46.7
ClCG06G000280 Citrullus lanatus HOM05D004579 ORTHO05D005376 3.3e-40 169.5 253 46.2
Lalb_Chr22g0355991 Lupinus albus HOM05D004579 ORTHO05D005376 3.3e-40 169.5 250 47.6
Lj1g0026801 Lotus japonicus HOM05D004579 ORTHO05D005376 4.4e-40 169.1 280 44.3
C05p43910 Brassica napus HOM05D004579 ORTHO05D005376 5.7e-40 168.7 266 43.2
Lalb_Chr24g0399591 Lupinus albus HOM05D004579 ORTHO05D005376 5.7e-40 168.7 251 47.4
VMungo0647G1140 Vigna mungo HOM05D004579 ORTHO05D005376 5.7e-40 168.7 249 46.2
COL.COLO4_21028 Corchorus olitorius HOM05D004579 ORTHO05D005376 7.5e-40 168.3 249 43.4
Gorai.001G023600 Gossypium raimondii HOM05D004579 ORTHO05D005376 7.5e-40 168.3 253 45.1
Oeu018654.1 Olea europaea HOM05D004579 ORTHO05D005376 7.5e-40 168.3 173 60.7
TAR383G0831 Trochodendron aralioides HOM05D004579 ORTHO05D005376 7.5e-40 168.3 257 44.0
BraA05t21726Z Brassica rapa HOM05D004579 ORTHO05D005376 9.7e-40 167.9 259 42.9
CiPaw.15G041800 Carya illinoinensis HOM05D004579 ORTHO05D005376 9.7e-40 167.9 268 46.3
Phvul.009G076200 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 9.7e-40 167.9 254 44.1
Glyma.14G092900 Glycine max HOM05D004579 ORTHO05D005376 1.3e-39 167.5 256 47.3
PGR031G0410 Punica granatum HOM05D004579 ORTHO05D005376 1.7e-39 167.2 239 43.1
TWI63G0708 Tripterygium wilfordii HOM05D004579 ORTHO05D005376 2.8e-39 166.4 258 45.7
Sed0027918 Sechium edule HOM05D004579 ORTHO05D005376 3.7e-39 166.0 176 49.4
Eucgr.C00634 Eucalyptus grandis HOM05D004579 ORTHO05D005376 6.3e-39 165.2 253 44.3
Carub.0003s2037 Capsella rubella HOM05D004579 ORTHO05D005376 8.2e-39 164.9 251 43.4
Sp3g18440 Schrenkiella parvula HOM05D004579 ORTHO05D005376 8.2e-39 164.9 257 44.4
A05p28470 Brassica napus HOM05D004579 ORTHO05D005376 1.1e-38 164.5 260 42.7
Ciclev10009210m.g Citrus clementina HOM05D004579 ORTHO05D005376 1.1e-38 164.5 260 45.4
BcaB06g26108 Brassica carinata HOM05D004579 ORTHO05D005376 1.4e-38 164.1 263 43.3
Aqoxy7G00927 Aquilegia oxysepala HOM05D004579 ORTHO05D005376 2.4e-38 163.3 251 46.2
arahy.Tifrunner.gnm1.ann1.Y2NPND Arachis hypogaea HOM05D004579 ORTHO05D005376 4.1e-38 162.5 260 46.2
Nn8g38954 Nelumbo nucifera HOM05D004579 ORTHO05D005376 5.3e-38 162.2 247 42.5
Sabra06G0181300 Salix brachista HOM05D004579 ORTHO05D005376 7.0e-38 161.8 270 45.6
arahy.Tifrunner.gnm1.ann1.A3GFYF Arachis hypogaea HOM05D004579 ORTHO05D005376 9.1e-38 161.4 260 46.5
Manes.16G077900 Manihot esculenta HOM05D004579 ORTHO05D005376 1.2e-37 161.0 264 45.5
ECA233G0431 Erigeron canadensis HOM05D004579 ORTHO05D005376 2.0e-37 160.2 270 44.1
THA.LOC104811250 Tarenaya hassleriana HOM05D004579 ORTHO05D005376 1.0e-36 157.9 168 50.6
CsaV3_6G006070 Cucumis sativus L. HOM05D004579 ORTHO05D005376 1.3e-36 157.5 253 45.8
AL3G34150 Arabidopsis lyrata HOM05D004579 ORTHO05D005376 5.0e-36 155.6 242 45.5
PSO017G1019 Papaver somniferum HOM05D004579 ORTHO05D005376 8.5e-36 154.8 178 50.0
FAN24G1203 Fragaria x ananassa HOM05D004579 ORTHO05D005376 2.5e-35 153.3 260 38.5
TAR626G1184 Trochodendron aralioides HOM05D004579 ORTHO05D005376 3.2e-35 152.9 187 54.5
PSO210G6518 Papaver somniferum HOM05D004579 ORTHO05D005376 7.2e-35 151.8 267 41.9
CDE02G1740 Ceratophyllum demersum HOM05D004579 ORTHO05D005376 1.6e-34 150.6 243 46.1
CSS0042880 Camellia sinensis var. sinensis HOM05D004579 ORTHO05D005376 2.7e-34 149.8 157 52.9
Lj5g0003794 Lotus japonicus HOM05D004579 ORTHO05D005376 2.7e-34 149.8 248 47.2
VMungo1309G2710 Vigna mungo HOM05D004579 ORTHO05D005376 2.7e-34 149.8 250 48.0
HPP92_014384 Vanilla planifolia HOM05D004579 ORTHO05D005376 8.0e-34 148.3 255 43.1
Sed0005208 Sechium edule HOM05D004579 ORTHO05D005376 1.4e-33 147.5 266 40.2
PSO210G6474 Papaver somniferum HOM05D004579 ORTHO05D005376 4.0e-33 146.0 271 42.1
Haze_18215 Corylus avellana HOM05D004579 ORTHO05D005376 5.2e-33 145.6 318 38.4
Nn6g35393 Nelumbo nucifera HOM05D004579 ORTHO05D005376 5.2e-33 145.6 245 43.3
PGR142G1482 Punica granatum HOM05D004579 ORTHO05D005376 2.0e-32 143.7 246 39.0
Zm00001eb356770 Zea mays HOM05D004579 ORTHO05D005376 2.0e-32 143.7 246 43.1
Gohir.A07G022140 Gossypium hirsutum HOM05D004579 ORTHO05D005376 3.4e-32 142.9 173 48.6
MBI01_g16584_MAGBIO Magnolia biondii HOM05D004579 ORTHO05D005376 7.5e-32 141.7 266 36.8
ATR0789G072 Amborella trichopoda HOM05D004579 ORTHO05D005376 2.8e-31 139.8 254 40.2
vmacro05280 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 1.1e-27 127.9 365 31.2
Os01g0559200 Oryza sativa ssp. japonica HOM05D004579 ORTHO05D005376 1.9e-27 127.1 265 40.0
MSTRG.25939 Avicennia marina HOM05D004579 ORTHO05D005376 4.2e-27 125.9 152 50.7
PSO063G4337 Papaver somniferum HOM05D004579 ORTHO05D005376 8.8e-25 118.2 220 36.8
SEGI_10906 Sequoiadendron giganteum HOM05D004579 ORTHO05D005376 1.3e-23 114.4 305 32.8
TPR.G25353 Trifolium pratense HOM05D004579 ORTHO05D005376 2.2e-23 113.6 134 53.0
RcHm_v2.0_Chr6g0310501 Rosa chinensis HOM05D004579 ORTHO05D005376 8.6e-20 101.7 141 45.4
arahy.Tifrunner.gnm1.ann1.E1I8FT Arachis hypogaea HOM05D004579 ORTHO05D005376 4.0e-17 92.8 160 41.2
vmacro00165 Vaccinium macrocarpon HOM05D004579 ORTHO05D005376 4.0e-17 92.8 249 34.5
CBR_g36456 Chara braunii HOM05D004579 ORTHO05D005376 8.9e-17 91.7 98 44.9
Phvul.001G033700 Phaseolus vulgaris HOM05D004579 ORTHO05D005376 2.6e-16 90.1 144 41.0
Hma1.2p1_1944F.1_g308530 Hydrangea macrophylla HOM05D004579 ORTHO05D005376 7.5e-16 88.6 128 43.0
PGSC0003DMG400032806 Solanum tuberosum HOM05D004579 ORTHO05D005376 7.5e-16 88.6 53 81.1
Cpa.g.sc84.21 Carica papaya HOM05D004579 ORTHO05D005376 2.2e-15 87.0 243 34.2
AagrBONN_evm.TU.Sc2ySwM_117.2939 Anthoceros agrestis HOM05D004579 ORTHO05D005376 4.9e-15 85.9 209 32.5
Actinidia18195 Actinidia chinensis HOM05D004579 ORTHO05D005376 1.1e-14 84.7 127 55.1
RcHm_v2.0_Chr6g0310491 Rosa chinensis HOM05D004579 ORTHO05D005376 1.0e-12 78.2 121 44.6
Pp3c10_2240 Physcomitrium patens HOM05D004579 ORTHO05D005376 6.6e-12 75.5 205 31.2
TPR.G25355 Trifolium pratense HOM05D004579 ORTHO05D005376 7.3e-11 72.0 111 51.4
Mapoly0091s0021 Marchantia polymorpha HOM05D004579 ORTHO05D005376 4.7e-10 69.3 179 33.0
PSO017G0877 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-06 58.2 53 47.2
PSO017G5975 Papaver somniferum HOM05D004579 ORTHO05D005376 1.1e-06 58.2 53 47.2
Actinidia18194 Actinidia chinensis HOM05D004579 ORTHO05D005376 2.4e-06 57.0 50 54.0
QL03p011522 Quercus lobata HOM05D004579 ORTHO05D005376 2.4e-06 57.0 45 60.0


User provided reference genes

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