Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044490 Amaranthus hybridus HOM05D005212 ORTHO05D006353 2.0e-175 619.0 309 100.0
EL10Ac9g21945 Beta vulgaris HOM05D005212 ORTHO05D006353 1.6e-124 449.9 333 69.4
AUR62008760 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.8e-121 438.3 311 72.7
Nn3g18288 Nelumbo nucifera HOM05D005212 ORTHO05D006353 6.9e-96 354.8 334 56.9
GSVIVG01023834001 Vitis vinifera HOM05D005212 ORTHO05D006353 9.0e-96 354.4 332 56.0
Prupe.8G002300 Prunus persica HOM05D005212 ORTHO05D006353 1.1e-93 347.4 334 57.2
Prupe.1G329700 Prunus persica HOM05D005212 ORTHO05D006353 1.4e-93 347.1 334 56.6
TWI60G0083 Tripterygium wilfordii HOM05D005212 ORTHO05D006353 2.5e-93 346.3 331 55.6
CSS0012951 Camellia sinensis var. sinensis HOM05D005212 ORTHO05D006353 3.2e-93 345.9 334 55.7
Thecc.04G190200 Theobroma cacao HOM05D005212 ORTHO05D006353 1.6e-92 343.6 333 54.1
Duzib268G0887 Durio zibethinus HOM05D005212 ORTHO05D006353 4.6e-92 342.0 333 54.1
Gohir.D09G202000 Gossypium hirsutum HOM05D005212 ORTHO05D006353 6.1e-92 341.7 333 54.1
Gohir.A09G208525 Gossypium hirsutum HOM05D005212 ORTHO05D006353 7.9e-92 341.3 337 53.4
Manes.17G080300 Manihot esculenta HOM05D005212 ORTHO05D006353 2.3e-91 339.7 328 56.4
Gorai.006G225800 Gossypium raimondii HOM05D005212 ORTHO05D006353 3.0e-91 339.3 333 53.8
Gohir.D13G128200 Gossypium hirsutum HOM05D005212 ORTHO05D006353 5.1e-91 338.6 333 53.8
Gorai.013G143600 Gossypium raimondii HOM05D005212 ORTHO05D006353 1.5e-90 337.0 333 53.5
Potri.001G461100 Populus trichocarpa HOM05D005212 ORTHO05D006353 1.5e-90 337.0 331 55.0
Solyc04g007850.3 Solanum lycopersicum HOM05D005212 ORTHO05D006353 1.9e-90 336.7 330 55.2
Atru.chr12.1198 Acer truncatum HOM05D005212 ORTHO05D006353 4.3e-90 335.5 338 53.0
Sopen04g002980 Solanum pennellii HOM05D005212 ORTHO05D006353 4.3e-90 335.5 330 55.2
CiPaw.05G194300 Carya illinoinensis HOM05D005212 ORTHO05D006353 5.7e-90 335.1 333 53.5
Ca_24783_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 7.4e-90 334.7 333 54.1
THA.LOC104816387 Tarenaya hassleriana HOM05D005212 ORTHO05D006353 6.3e-89 331.6 331 54.1
CAN.G458.6 Capsicum annuum HOM05D005212 ORTHO05D006353 1.4e-88 330.5 330 53.6
Gohir.A13G124600 Gossypium hirsutum HOM05D005212 ORTHO05D006353 1.4e-88 330.5 333 52.6
Peaxi162Scf00723g00423 Petunia axillaris HOM05D005212 ORTHO05D006353 1.4e-88 330.5 344 53.2
Lalb_Chr07g0187701 Lupinus albus HOM05D005212 ORTHO05D006353 2.4e-88 329.7 335 54.6
Sc10g0005560 Simmondsia chinensis HOM05D005212 ORTHO05D006353 4.1e-88 328.9 298 57.0
Ciclev10028815m.g Citrus clementina HOM05D005212 ORTHO05D006353 5.3e-88 328.6 339 53.7
Medtr3g088850 Medicago truncatula HOM05D005212 ORTHO05D006353 1.5e-87 327.0 332 51.8
PGR102G0858 Punica granatum HOM05D005212 ORTHO05D006353 1.5e-87 327.0 329 54.7
Migut.E00446 Erythranthe guttata HOM05D005212 ORTHO05D006353 3.4e-87 325.9 330 53.6
Duzib151G1103 Durio zibethinus HOM05D005212 ORTHO05D006353 4.5e-87 325.5 333 52.3
HanXRQChr08g0212231 Helianthus annuus HOM05D005212 ORTHO05D006353 5.9e-87 325.1 331 54.1
GSVIVG01011709001 Vitis vinifera HOM05D005212 ORTHO05D006353 3.8e-86 322.4 346 52.0
Nitab4.5_0009115g0010 Nicotiana tabacum HOM05D005212 ORTHO05D006353 5.0e-86 322.0 335 53.7
Psat7g082520 Pisum sativum HOM05D005212 ORTHO05D006353 5.0e-86 322.0 335 53.1
Hund05206 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.1e-85 320.9 258 64.7
HanXRQChr12g0363921 Helianthus annuus HOM05D005212 ORTHO05D006353 1.9e-85 320.1 341 51.9
Lj4g0012207 Lotus japonicus HOM05D005212 ORTHO05D006353 1.9e-85 320.1 334 52.7
TPR.G5141 Trifolium pratense HOM05D005212 ORTHO05D006353 3.2e-85 319.3 333 52.3
Ciclev10017606m.g Citrus clementina HOM05D005212 ORTHO05D006353 7.2e-85 318.2 323 54.8
FvH4_4g34100 Fragaria vesca HOM05D005212 ORTHO05D006353 1.6e-84 317.0 331 53.5
TPR.G18569 Trifolium pratense HOM05D005212 ORTHO05D006353 2.1e-84 316.6 333 52.0
ECA233G1697 Erigeron canadensis HOM05D005212 ORTHO05D006353 3.6e-84 315.8 344 50.3
Aqoxy7G01425 Aquilegia oxysepala HOM05D005212 ORTHO05D006353 1.0e-83 314.3 332 53.3
PGSC0003DMG400029477 Solanum tuberosum HOM05D005212 ORTHO05D006353 1.4e-83 313.9 303 53.5
Medtr3g096970 Medicago truncatula HOM05D005212 ORTHO05D006353 1.8e-83 313.5 334 50.9
Sp4g26600 Schrenkiella parvula HOM05D005212 ORTHO05D006353 1.8e-83 313.5 334 51.5
AL4G43530 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 2.3e-83 313.2 339 51.3
Rhsim09G0094100 Rhododendron simsii HOM05D005212 ORTHO05D006353 3.0e-83 312.8 334 52.4
Thhalv10001552m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.9e-83 312.4 331 52.6
Carub.0004s2707 Capsella rubella HOM05D005212 ORTHO05D006353 2.5e-82 309.7 340 50.6
AT2G44510 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 4.3e-82 308.9 337 51.3
MD16G1023100 Malus domestica HOM05D005212 ORTHO05D006353 7.4e-82 308.1 272 58.1
RcHm_v2.0_Chr3g0448371 Rosa chinensis HOM05D005212 ORTHO05D006353 2.2e-81 306.6 332 52.1
BcaC02g07097 Brassica carinata HOM05D005212 ORTHO05D006353 2.8e-81 306.2 331 50.5
Sed0020748 Sechium edule HOM05D005212 ORTHO05D006353 4.8e-81 305.4 333 49.8
RcHm_v2.0_Chr4g0443611 Rosa chinensis HOM05D005212 ORTHO05D006353 6.3e-81 305.1 333 51.7
BolC4t28609H Brassica oleracea HOM05D000073 ORTHO05D006353 8.2e-81 304.7 331 50.2
Aa31LG1G21440 Aethionema arabicum HOM05D005212 ORTHO05D006353 1.1e-80 304.3 340 51.2
CANSAT01G1481 Cannabis sativa HOM05D005212 ORTHO05D006353 1.1e-80 304.3 331 49.8
Glyma.08G095400 Glycine max HOM05D005212 ORTHO05D006353 5.3e-80 302.0 332 53.0
CARHR139690 Cardamine hirsuta HOM05D005212 ORTHO05D006353 6.9e-80 301.6 330 50.3
Hma1.2p1_0060F.1_g032750 Hydrangea macrophylla HOM05D005212 ORTHO05D006353 2.0e-79 300.1 329 49.8
C04p71050 Brassica napus HOM05D000073 ORTHO05D006698 1.3e-78 297.4 324 50.0
Eucgr.H01942 Eucalyptus grandis HOM05D005212 ORTHO05D006353 1.7e-78 297.0 350 49.4
BcaB06g29383 Brassica carinata HOM05D005212 ORTHO05D006353 6.5e-78 295.0 331 48.6
SGA_v2.0_scaffold39G15210 Striga asiatica HOM05D005212 ORTHO05D006353 6.5e-78 295.0 335 50.7
BraA04t18796Z Brassica rapa HOM05D000073 ORTHO05D000033 1.4e-77 293.9 336 49.7
Haze_10945 Corylus avellana HOM05D005212 ORTHO05D006353 1.9e-77 293.5 335 49.0
A04p33360 Brassica napus HOM05D000073 ORTHO05D006698 4.2e-77 292.4 320 50.3
AUR62014219 Chenopodium quinoa HOM05D005212 ORTHO05D006353 7.2e-77 291.6 280 57.9
DCAR_014725 Daucus carota HOM05D005212 ORTHO05D006353 7.2e-77 291.6 332 49.7
Oeu014050.1 Olea europaea HOM05D005212 ORTHO05D006353 7.2e-77 291.6 334 50.0
QL03p033836 Quercus lobata HOM05D005212 ORTHO05D006353 7.9e-76 288.1 298 52.0
Lsat_1_v5_gn_4_8681 Lactuca sativa HOM05D005212 ORTHO05D006353 2.6e-74 283.1 239 57.7
Sabra16G0312600 Salix brachista HOM05D005212 ORTHO05D006353 4.4e-74 282.3 360 46.9
CsaV3_5G028340 Cucumis sativus L. HOM05D005212 ORTHO05D006353 7.4e-74 281.6 335 48.1
Lj3C867T4 Lonicera japonica HOM05D005212 ORTHO05D006353 1.1e-72 277.7 310 51.0
Ca_01441_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 2.4e-72 276.6 300 51.3
Phvul.005G028500 Phaseolus vulgaris HOM05D005212 ORTHO05D006353 9.1e-72 274.6 340 49.4
FAN07G0183 Fragaria x ananassa HOM05D005212 ORTHO05D006353 4.5e-71 272.3 282 53.2
vmacro10659 Vaccinium macrocarpon HOM05D005212 ORTHO05D006353 1.7e-70 270.4 311 50.2
Manes.15G130900 Manihot esculenta HOM05D005212 ORTHO05D006353 2.2e-70 270.0 303 50.5
PSO017G4317 Papaver somniferum HOM05D005212 ORTHO05D006353 1.5e-69 267.3 339 44.8
PSO339G5759 Papaver somniferum HOM05D005212 ORTHO05D006353 1.5e-69 267.3 340 45.6
Dinv28041 Davidia involucrata HOM05D005212 ORTHO05D006353 4.2e-69 265.8 248 56.9
Dinv36246 Davidia involucrata HOM05D005212 ORTHO05D006353 7.2e-69 265.0 314 49.4
FAN12G1848 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.6e-68 263.8 297 51.5
PSO478G2757 Papaver somniferum HOM05D005212 ORTHO05D006353 2.1e-68 263.5 340 44.4
AUR62025478 Chenopodium quinoa HOM05D005212 ORTHO05D006353 4.7e-68 262.3 216 63.0
Sed0012238 Sechium edule HOM05D005212 ORTHO05D006353 1.4e-67 260.8 236 54.7
ClCG01G006340 Citrullus lanatus HOM05D005212 ORTHO05D006353 5.2e-67 258.8 363 43.5
Os03g0853900 Oryza sativa ssp. japonica HOM05D005212 ORTHO05D006353 2.8e-65 253.1 357 41.7
SalBow2G0696 Salvia bowleyana HOM05D005212 ORTHO05D006353 4.8e-65 252.3 300 47.3
Zm00001eb210590 Zea mays HOM05D005212 ORTHO05D006353 1.1e-64 251.1 363 40.2
FAN22G0397 Fragaria x ananassa HOM05D005212 ORTHO05D006353 1.8e-64 250.4 328 46.3
MELO3C005296.2 Cucumis melo HOM05D005212 ORTHO05D006353 9.1e-64 248.1 310 46.8
FAN17G0532 Fragaria x ananassa HOM05D005212 ORTHO05D006353 2.0e-63 246.9 316 47.5
MSTRG.13603 Avicennia marina HOM05D005212 ORTHO05D006353 2.7e-63 246.5 214 57.9
HPP92_020815 Vanilla planifolia HOM05D005212 ORTHO05D006353 5.9e-63 245.4 307 44.6
ATR0829G227 Amborella trichopoda HOM05D005212 ORTHO05D006353 7.7e-63 245.0 320 45.6
Oeu063592.1 Olea europaea HOM05D005212 ORTHO05D006353 1.1e-61 241.1 293 46.1
BcaC01g05169 Brassica carinata HOM05D005212 ORTHO05D006353 1.3e-57 227.6 268 49.3
PSO384G3589 Papaver somniferum HOM05D005212 ORTHO05D006353 1.1e-56 224.6 353 39.9
BcaNung07052 Brassica carinata HOM05D005212 ORTHO05D006353 1.4e-56 224.2 309 43.0
CiPaw.06G048200 Carya illinoinensis HOM05D005212 ORTHO05D006353 3.1e-56 223.0 310 43.9
VMungo1080G0912 Vigna mungo HOM05D005212 ORTHO05D006353 2.0e-55 220.3 296 45.3
Mapoly0006s0099 Marchantia polymorpha HOM05D005212 ORTHO05D006353 2.9e-54 216.5 266 43.6
AUR62014218 Chenopodium quinoa HOM05D005212 ORTHO05D006353 5.0e-54 215.7 246 51.6
AUR62014216 Chenopodium quinoa HOM05D005212 ORTHO05D006353 1.5e-53 214.2 205 61.5
Thhalv10014438m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 2.7e-52 209.9 213 54.0
AagrBONN_evm.TU.Sc2ySwM_344.3756 Anthoceros agrestis HOM05D005212 ORTHO05D006353 1.4e-51 207.6 274 42.7
SMO334G0102 Selaginella moellendorffii HOM05D005212 ORTHO05D006353 1.4e-51 207.6 240 45.0
AUR62018080 Chenopodium quinoa HOM05D005212 ORTHO05D006353 3.0e-51 206.5 293 44.0
Ca_09937_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.8e-50 201.4 235 47.7
Ca_09949_v3 Cicer arietinum L. HOM05D005212 ORTHO05D006353 9.8e-50 201.4 235 47.7
COL.COLO4_35970 Corchorus olitorius HOM05D005212 ORTHO05D006353 1.3e-49 201.1 157 59.2
Pp3c25_10280 Physcomitrium patens HOM05D005212 ORTHO05D006353 1.4e-48 197.6 271 41.0
Hund24107 Selenicereus undatus HOM05D005212 ORTHO05D006353 1.8e-48 197.2 125 76.0
BolC3t15307H Brassica oleracea HOM05D005212 ORTHO05D006353 1.3e-46 191.0 225 49.3
BcaB01g03308 Brassica carinata HOM05D005212 ORTHO05D006353 2.0e-42 177.2 238 43.3
Cc04_g08850 Coffea canephora HOM05D005212 ORTHO05D006353 5.7e-42 175.6 173 53.8
C03p29590 Brassica napus HOM05D005212 ORTHO05D006353 3.2e-40 169.9 235 44.7
AT5G03830 Arabidopsis thaliana HOM05D005212 ORTHO05D006353 1.2e-36 157.9 233 44.2
Cpa.g.sc1084.4 Carica papaya HOM05D005212 ORTHO05D006353 3.6e-36 156.4 104 68.3
Cc04_g08860 Coffea canephora HOM05D005212 ORTHO05D006353 1.0e-35 154.8 162 53.7
AL6G13400 Arabidopsis lyrata HOM05D005212 ORTHO05D006353 1.3e-33 147.9 102 67.6
CBR_g30204 Chara braunii HOM05D000019 ORTHO05D000353 2.7e-31 140.2 146 48.6
Thhalv10015472m.g Eutrema salsugineum HOM05D005212 ORTHO05D006353 3.0e-30 136.7 161 49.7
CDE04G0882 Ceratophyllum demersum HOM05D005212 ORTHO05D006353 8.1e-28 128.6 153 47.1
Sabra11G0142300 Salix brachista HOM05D005212 ORTHO05D006353 1.7e-25 120.9 167 43.7
Cre03.g200991 Chlamydomonas reinhardtii HOM05D005212 ORTHO05D006353 2.2e-25 120.6 288 30.2
unitig_22.g5595 Utricularia gibba HOM05D005212 ORTHO05D006353 2.9e-25 120.2 175 42.9
unitig_22.g5596 Utricularia gibba HOM05D005212 ORTHO05D006353 1.2e-23 114.8 79 67.1
MCO05G230 Micromonas commoda HOM05D005212 ORTHO05D006353 3.9e-22 109.8 250 32.0
SEGI_04595 Sequoiadendron giganteum HOM05D005212 ORTHO05D006353 3.8e-17 93.2 155 34.8
Peaxi162Scf00376g00010 Petunia axillaris HOM05D005212 ORTHO05D006353 1.9e-16 90.9 148 39.2
Cfa023609 Carpinus fangiana HOM05D005212 ORTHO05D006353 1.5e-13 81.3 156 28.8
ATR0594G067 Amborella trichopoda HOM05D005212 ORTHO05D006353 1.1e-11 75.1 80 51.2
Ca_15863_v3 Cicer arietinum L. HOM05D000681 ORTHO05D011778 2.3e-06 57.4 48 50.0
PRCOL_00004527 Prasinoderma coloniale HOM05D005212 ORTHO05D006353 6.6e-06 55.8 188 25.0


User provided reference genes

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