Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044450 Amaranthus hybridus HOM05D006132 ORTHO05D007305 0.0e+00 3773.0 1932 100.0
AUR62040212 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2954.1 1964 78.0
AUR62009214 Chenopodium quinoa HOM05D006132 ORTHO05D007305 0.0e+00 2907.9 1974 76.7
EL10Ac2g03960 Beta vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 2835.8 2089 71.5
Hund19486 Selenicereus undatus HOM05D006132 ORTHO05D007305 0.0e+00 2377.1 1949 64.2
Sc09g0009530 Simmondsia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2286.1 1996 61.3
Dinv23402 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2143.6 1951 58.9
QL12p040855 Quercus lobata HOM05D006132 ORTHO05D007305 0.0e+00 2142.5 1975 58.0
GSVIVG01035326001 Vitis vinifera HOM05D006132 ORTHO05D007305 0.0e+00 2118.6 1969 58.2
Haze_01967 Corylus avellana HOM05D006132 ORTHO05D007305 0.0e+00 2102.4 1991 57.2
CiPaw.07G201400 Carya illinoinensis HOM05D006132 ORTHO05D007305 0.0e+00 2102.0 1983 57.1
Ciclev10010526m.g Citrus clementina HOM05D006132 ORTHO05D007305 0.0e+00 2092.8 1948 57.7
Atru.chr7.2044 Acer truncatum HOM05D006132 ORTHO05D007305 0.0e+00 2077.0 1993 56.9
Thecc.09G049200 Theobroma cacao HOM05D006132 ORTHO05D007305 0.0e+00 2075.1 1991 56.8
Lj8C561G12 Lonicera japonica HOM05D006132 ORTHO05D007305 0.0e+00 2072.0 1889 58.2
TAR636G1718 Trochodendron aralioides HOM05D006132 ORTHO05D007305 0.0e+00 2066.2 2072 55.3
Nn8g39007 Nelumbo nucifera HOM05D006132 ORTHO05D007305 0.0e+00 2057.3 2063 54.0
FvH4_2g35140 Fragaria vesca HOM05D006132 ORTHO05D007305 0.0e+00 2050.8 1972 56.1
Potri.018G057900 Populus trichocarpa HOM05D006132 ORTHO05D007305 0.0e+00 2050.0 1997 56.6
Prupe.1G443500 Prunus persica HOM05D006132 ORTHO05D007305 0.0e+00 2049.2 1903 57.5
vmacro00180 Vaccinium macrocarpon HOM05D006132 ORTHO05D007305 0.0e+00 2048.1 1928 57.1
Manes.03G057600 Manihot esculenta HOM05D006132 ORTHO05D007305 0.0e+00 2047.3 1984 56.4
COL.COLO4_21010 Corchorus olitorius HOM05D006132 ORTHO05D007305 0.0e+00 2035.8 1988 55.9
MD08G1108900 Malus domestica HOM05D006132 ORTHO05D007305 0.0e+00 2023.1 1994 55.4
Cc08_g10020 Coffea canephora HOM05D006132 ORTHO05D007305 0.0e+00 2022.3 1942 56.1
RcHm_v2.0_Chr6g0306811 Rosa chinensis HOM05D006132 ORTHO05D007305 0.0e+00 2018.4 1994 55.2
Dinv02537 Davidia involucrata HOM05D006132 ORTHO05D007305 0.0e+00 2012.7 1879 57.9
Duzib168G1248 Durio zibethinus HOM05D006132 ORTHO05D007305 0.0e+00 1996.9 1985 55.2
Gorai.001G024600 Gossypium raimondii HOM05D006132 ORTHO05D007305 0.0e+00 1996.9 1982 54.7
Glyma.04G087200 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1981.8 1967 54.6
TWI34G0160 Tripterygium wilfordii HOM05D006132 ORTHO05D007305 0.0e+00 1978.8 1983 55.1
Sed0028022 Sechium edule HOM05D006132 ORTHO05D007305 0.0e+00 1971.4 1965 54.4
Glyma.06G088900 Glycine max HOM05D006132 ORTHO05D007305 0.0e+00 1971.1 1966 54.5
MELO3C003478.2 Cucumis melo HOM05D006132 ORTHO05D007305 0.0e+00 1965.7 1960 54.2
VMungo1309G3161 Vigna mungo HOM05D006132 ORTHO05D007305 0.0e+00 1961.0 1972 54.0
Lj1g0008631 Lotus japonicus HOM05D006132 ORTHO05D007305 0.0e+00 1960.3 1966 54.2
MSTRG.25925 Avicennia marina HOM05D006132 ORTHO05D007305 0.0e+00 1956.0 2000 53.3
Ca_15565_v3 Cicer arietinum L. HOM05D006132 ORTHO05D007305 0.0e+00 1952.9 1970 53.7
Medtr3g110417 Medicago truncatula HOM05D006132 ORTHO05D007305 0.0e+00 1951.8 1965 54.1
CsaV3_3G048410 Cucumis sativus L. HOM05D006132 ORTHO05D007305 0.0e+00 1951.0 1996 53.4
Lalb_Chr08g0242871 Lupinus albus HOM05D006132 ORTHO05D007305 0.0e+00 1946.8 1975 54.0
Phvul.009G112700 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 0.0e+00 1932.9 1965 53.4
Gohir.D07G023900 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1930.2 1898 55.2
Aqoxy7G03955 Aquilegia oxysepala HOM05D006132 ORTHO05D007305 0.0e+00 1927.1 2054 52.8
Migut.A00170 Erythranthe guttata HOM05D006132 ORTHO05D007305 0.0e+00 1927.1 1983 53.4
Sopen08g019670 Solanum pennellii HOM05D006132 ORTHO05D007305 0.0e+00 1922.9 1946 53.7
PGR031G1631 Punica granatum HOM05D006132 ORTHO05D007305 0.0e+00 1910.6 1934 54.3
PSO210G2191 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1906.7 1937 53.4
Psat0s3156g0040 Pisum sativum HOM05D006132 ORTHO05D007305 0.0e+00 1902.1 1971 53.2
TPR.G12374 Trifolium pratense HOM05D006132 ORTHO05D007305 0.0e+00 1893.6 1984 52.8
PSO210G7354 Papaver somniferum HOM05D006132 ORTHO05D007305 0.0e+00 1891.7 2032 51.8
arahy.Tifrunner.gnm1.ann1.GM174E Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1883.2 2106 51.2
ClCG11G015000 Citrullus lanatus HOM05D006132 ORTHO05D007305 0.0e+00 1882.8 2004 52.3
CAN.G9.6 Capsicum annuum HOM05D006132 ORTHO05D007305 0.0e+00 1880.1 1990 52.0
ECA240G1625 Erigeron canadensis HOM05D006132 ORTHO05D007305 0.0e+00 1877.4 1965 53.0
THA.LOC104818581 Tarenaya hassleriana HOM05D006132 ORTHO05D007305 0.0e+00 1863.6 1951 52.9
Lsat_1_v5_gn_3_109020 Lactuca sativa HOM05D006132 ORTHO05D007305 0.0e+00 1857.4 1909 53.2
MBI01_g01249_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 0.0e+00 1852.4 2020 51.2
DCAR_007699 Daucus carota HOM05D006132 ORTHO05D007305 0.0e+00 1840.9 1936 52.9
HanXRQChr03g0077991 Helianthus annuus HOM05D006132 ORTHO05D007305 0.0e+00 1840.5 1956 51.9
AL7G18910 Arabidopsis lyrata HOM05D006132 ORTHO05D007305 0.0e+00 1840.1 1894 52.6
AT4G32820 Arabidopsis thaliana HOM05D006132 ORTHO05D007305 0.0e+00 1840.1 1898 52.5
SalBow4G1475 Salvia bowleyana HOM05D006132 ORTHO05D007305 0.0e+00 1837.0 1956 51.6
Sp7g30590 Schrenkiella parvula HOM05D006132 ORTHO05D007305 0.0e+00 1832.8 1866 52.5
Carub.0007s0767 Capsella rubella HOM05D006132 ORTHO05D007305 0.0e+00 1830.8 1890 52.9
Oeu038827.1 Olea europaea HOM05D006132 ORTHO05D007305 0.0e+00 1827.0 1922 52.7
BcaC09g52078 Brassica carinata HOM05D006132 ORTHO05D007305 0.0e+00 1822.4 1869 52.6
C01p06070 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1818.9 1872 52.6
Thhalv10026823m.g Eutrema salsugineum HOM05D006132 ORTHO05D007305 0.0e+00 1818.1 1869 52.6
arahy.Tifrunner.gnm1.ann1.XPLI6K Arachis hypogaea HOM05D006132 ORTHO05D007305 0.0e+00 1817.0 1951 52.8
A01p05470 Brassica napus HOM05D006132 ORTHO05D007305 0.0e+00 1808.9 1866 52.4
Rhsim11G0049000 Rhododendron simsii HOM05D006132 ORTHO05D007305 0.0e+00 1807.0 1933 52.2
Aa31sc208G40 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1795.0 1858 52.7
BraA01t00520Z Brassica rapa HOM05D006132 ORTHO05D007305 0.0e+00 1795.0 1898 51.7
BolC1t00600H Brassica oleracea HOM05D006132 ORTHO05D007305 0.0e+00 1794.6 1900 51.9
Aa31LG5G17300 Aethionema arabicum HOM05D006132 ORTHO05D007305 0.0e+00 1789.2 1890 52.3
Gohir.A07G022180 Gossypium hirsutum HOM05D006132 ORTHO05D007305 0.0e+00 1780.0 1850 53.0
Nitab4.5_0000318g0080 Nicotiana tabacum HOM05D006132 ORTHO05D007305 0.0e+00 1779.2 1891 52.1
Eucgr.C00619 Eucalyptus grandis HOM05D006132 ORTHO05D007305 0.0e+00 1758.4 1848 52.2
SGA_v2.0_scaffold103G30057 Striga asiatica HOM05D006132 ORTHO05D007305 0.0e+00 1755.3 1926 50.7
Actinidia01213 Actinidia chinensis HOM05D006132 ORTHO05D007305 0.0e+00 1662.5 1907 50.4
ATR0815G026 Amborella trichopoda HOM05D006132 ORTHO05D007305 0.0e+00 1637.1 2138 45.3
Solyc08g066010.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 0.0e+00 1515.0 1529 54.0
Cpa.g.sc7.235 Carica papaya HOM05D006132 ORTHO05D007305 0.0e+00 1452.6 1573 51.3
HPP92_019594 Vanilla planifolia HOM05D006132 ORTHO05D007305 0.0e+00 1413.7 1749 46.5
unitig_0.g2566 Utricularia gibba HOM05D006132 ORTHO05D007305 0.0e+00 1352.0 1922 42.4
FAN20G0110 Fragaria x ananassa HOM05D006132 ORTHO05D007305 0.0e+00 1315.4 1331 54.5
CSS0000087 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 0.0e+00 1256.9 1101 60.3
SMO365G0056 Selaginella moellendorffii HOM05D006132 ORTHO05D007305 0.0e+00 1146.0 1907 38.3
Mapoly0021s0014 Marchantia polymorpha HOM05D006132 ORTHO05D007305 0.0e+00 1144.4 2141 35.5
Pp3c4_1880 Physcomitrium patens HOM05D006132 ORTHO05D007305 0.0e+00 1132.5 2194 34.7
AagrBONN_evm.TU.Sc2ySwM_344.875 Anthoceros agrestis HOM05D006132 ORTHO05D007305 5.5e-300 1035.4 2099 34.1
CSS0048337 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 1.3e-269 934.5 710 67.3
Peaxi162Scf00840g00429 Petunia axillaris HOM05D006132 ORTHO05D007305 2.1e-227 794.3 773 55.1
CARHR240810 Cardamine hirsuta HOM05D006132 ORTHO05D007305 8.1e-227 792.3 678 59.6
Nitab4.5_0002021g0060 Nicotiana tabacum HOM05D006132 ORTHO05D007305 1.3e-221 775.0 1354 38.3
SHI18807 Sapria himalayana HOM05D006132 ORTHO05D007305 6.4e-216 756.1 1142 39.8
CBR_g22939 Chara braunii HOM05D006132 ORTHO05D000048 1.6e-211 741.5 2096 29.6
CSS0029204 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 3.4e-209 733.8 794 52.3
Psat4g077080 Pisum sativum HOM05D006132 ORTHO05D007305 7.7e-177 626.3 751 48.5
Psat4g077000 Pisum sativum HOM05D006132 ORTHO05D007305 6.3e-163 580.1 706 47.7
SHI18802 Sapria himalayana HOM05D006132 ORTHO05D007305 1.9e-159 568.5 784 45.3
Solyc08g066000.2 Solanum lycopersicum HOM05D006132 ORTHO05D007305 7.3e-111 407.1 421 51.5
Peaxi162Scf00840g00428 Petunia axillaris HOM05D006132 ORTHO05D007305 4.9e-107 394.4 386 51.8
TAR636G0297 Trochodendron aralioides HOM05D006132 ORTHO05D007305 6.7e-72 277.7 484 39.3
TAR636G2276 Trochodendron aralioides HOM05D006132 ORTHO05D007305 1.2e-68 266.9 197 68.5
Psat2g119040 Pisum sativum HOM05D006132 ORTHO05D007305 9.4e-66 257.3 223 60.1
CSS0021543 Camellia sinensis var. sinensis HOM05D006132 ORTHO05D007305 2.6e-60 239.2 217 53.5
Lsat_1_v5_gn_0_25341 Lactuca sativa HOM05D006132 ORTHO05D007305 7.7e-60 237.7 271 47.6
Zm00001eb053280 Zea mays HOM05D006132 ORTHO05D007305 1.9e-58 233.0 338 40.2
Cpa.g.sc7.234 Carica papaya HOM05D006132 ORTHO05D007305 1.1e-53 217.2 124 83.9
SHI18803 Sapria himalayana HOM05D006132 ORTHO05D007305 5.0e-51 208.4 267 44.9
Carub.0003s0455 Capsella rubella HOM05D006132 ORTHO05D007305 1.3e-30 140.6 199 40.2
Glyma.18G112500 Glycine max HOM05D006132 ORTHO05D007305 1.2e-28 134.0 80 78.8
MBI04_g05153_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 7.8e-28 131.3 127 50.4
Zm00001eb053310 Zea mays HOM05D006132 ORTHO05D007305 1.1e-24 120.9 237 37.1
Zm00001eb053300 Zea mays HOM05D006132 ORTHO05D007305 7.5e-23 114.8 127 46.5
MCO10G298 Micromonas commoda HOM05D006132 ORTHO05D007305 1.4e-21 110.5 472 24.6
Zm00001eb053290 Zea mays HOM05D006132 ORTHO05D007305 1.5e-15 90.5 68 63.2
Os03g0685750 Oryza sativa ssp. japonica HOM05D006132 ORTHO05D007305 2.6e-15 89.7 165 35.8
CDE12G0288 Ceratophyllum demersum HOM05D004517 ORTHO05D005366 1.7e-14 87.0 74 59.5
CiPaw.04G074200 Carya illinoinensis HOM05D006132 ORTHO05D007305 2.9e-14 86.3 61 65.6
Sabra06G0183100 Salix brachista HOM05D006132 ORTHO05D007305 2.9e-14 86.3 83 51.8
MBI04_g44310_MAGBIO Magnolia biondii HOM05D006132 ORTHO05D007305 3.3e-10 72.8 69 50.7
Glyma.11G174000 Glycine max HOM05D006132 ORTHO05D007305 3.6e-09 69.3 67 53.7
Phvul.003G090001 Phaseolus vulgaris HOM05D006132 ORTHO05D007305 7.6e-07 61.6 119 31.1


User provided reference genes

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