Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044360 Amaranthus hybridus HOM05D005327 ORTHO05D006655 1.3e-238 829.3 420 100.0
AUR62033244 Chenopodium quinoa HOM05D005327 ORTHO05D006655 6.8e-187 657.5 439 76.5
AUR62021329 Chenopodium quinoa HOM05D005327 ORTHO05D006655 1.2e-183 646.7 439 75.2
EL10Ac8g18314 Beta vulgaris HOM05D005327 ORTHO05D006655 2.0e-167 592.8 559 60.8
Hund09044 Selenicereus undatus HOM05D005327 ORTHO05D006655 2.6e-162 575.9 455 65.3
GSVIVG01035172001 Vitis vinifera HOM05D005327 ORTHO05D006655 1.5e-157 560.1 437 65.7
Hma1.2p1_0022F.1_g014820 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 1.7e-153 546.6 438 63.9
TAR383G0919 Trochodendron aralioides HOM05D005327 ORTHO05D006655 5.4e-152 541.6 437 64.3
Dinv02614 Davidia involucrata HOM05D005327 ORTHO05D006655 6.0e-151 538.1 437 64.3
Lsat_1_v5_gn_7_59540 Lactuca sativa HOM05D005327 ORTHO05D006655 1.0e-150 537.3 437 63.6
Rhsim01G0113000 Rhododendron simsii HOM05D005327 ORTHO05D006655 8.6e-150 534.3 437 62.9
HanXRQChr03g0067401 Helianthus annuus HOM05D005327 ORTHO05D006655 2.5e-149 532.7 437 63.2
MBI16_g18209_MAGBIO Magnolia biondii HOM05D000751 ORTHO05D000889 2.5e-149 532.7 439 62.6
PSO063G6174 Papaver somniferum HOM05D005327 ORTHO05D006655 4.3e-149 531.9 437 62.2
Lj4g0024487 Lotus japonicus HOM05D005327 ORTHO05D006655 5.6e-149 531.6 436 61.5
Medtr8g101540 Medicago truncatula HOM05D005327 ORTHO05D006655 1.2e-148 530.4 437 63.4
Psat7g020320 Pisum sativum HOM05D005327 ORTHO05D006655 6.2e-148 528.1 432 63.2
Actinidia02486 Actinidia chinensis HOM05D005327 ORTHO05D006655 8.1e-148 527.7 435 63.0
PSO170G4496 Papaver somniferum HOM05D005327 ORTHO05D006655 8.1e-148 527.7 438 62.3
Ciclev10008332m.g Citrus clementina HOM05D005327 ORTHO05D006655 1.5e-146 523.5 437 61.6
Cpa.g.sc115.46 Carica papaya HOM05D005327 ORTHO05D006655 2.0e-146 523.1 436 61.5
Migut.J00826 Erythranthe guttata HOM05D005327 ORTHO05D006655 7.6e-146 521.2 435 62.3
Gorai.009G002000 Gossypium raimondii HOM05D005327 ORTHO05D006655 7.6e-146 521.2 436 61.5
TWI34G0155 Tripterygium wilfordii HOM05D005327 ORTHO05D006655 7.6e-146 521.2 437 62.0
ClCG06G013980 Citrullus lanatus HOM05D005327 ORTHO05D006655 1.3e-145 520.4 432 61.8
CsaV3_1G032190 Cucumis sativus L. HOM05D005327 ORTHO05D006655 1.3e-145 520.4 437 61.6
Gohir.D05G002100 Gossypium hirsutum HOM05D005327 ORTHO05D006655 2.2e-145 519.6 436 61.2
MELO3C017398.2 Cucumis melo HOM05D005327 ORTHO05D006655 2.9e-145 519.2 437 61.1
PGR044G1838 Punica granatum HOM05D005327 ORTHO05D006655 4.9e-145 518.5 438 62.3
Atru.chr7.986 Acer truncatum HOM05D005327 ORTHO05D006655 1.4e-144 516.9 439 62.9
Aqoxy7G02706 Aquilegia oxysepala HOM05D005327 ORTHO05D006655 1.9e-144 516.5 435 61.4
Ca_17407_v3 Cicer arietinum L. HOM05D005327 ORTHO05D006655 5.4e-144 515.0 437 60.4
DCAR_019096 Daucus carota HOM05D005327 ORTHO05D006655 5.4e-144 515.0 440 61.6
MD13G1235800 Malus domestica HOM05D005327 ORTHO05D006655 7.1e-144 514.6 435 61.4
SGA_v2.0_scaffold31G12725 Striga asiatica HOM05D005327 ORTHO05D006655 7.1e-144 514.6 435 61.4
Glyma.08G028600 Glycine max HOM05D005327 ORTHO05D006655 2.7e-143 512.7 435 60.5
Lalb_Chr09g0331881 Lupinus albus HOM05D005327 ORTHO05D006655 2.7e-143 512.7 437 61.6
Lalb_Chr05g0223671 Lupinus albus HOM05D005327 ORTHO05D006655 7.8e-143 511.1 432 61.6
Duzib170G0396 Durio zibethinus HOM05D005327 ORTHO05D006655 1.7e-142 510.0 433 60.0
Glyma.05G222000 Glycine max HOM05D005327 ORTHO05D006655 2.3e-142 509.6 435 60.0
MSTRG.19391 Avicennia marina HOM05D005327 ORTHO05D006655 3.0e-142 509.2 432 62.0
THA.LOC104826954 Tarenaya hassleriana HOM05D005327 ORTHO05D006655 3.9e-142 508.8 431 61.5
CiPaw.15G154300 Carya illinoinensis HOM05D005327 ORTHO05D006655 8.7e-142 507.7 452 59.7
Eucgr.C02197 Eucalyptus grandis HOM05D005327 ORTHO05D006655 1.9e-141 506.5 440 60.7
FAN12G0339 Fragaria x ananassa HOM05D005327 ORTHO05D006655 5.6e-141 505.0 435 60.7
MD16G1240500 Malus domestica HOM05D005327 ORTHO05D006655 7.3e-141 504.6 435 61.1
ATR0626G140 Amborella trichopoda HOM05D005327 ORTHO05D006655 9.6e-141 504.2 435 61.1
Thecc.09G189900 Theobroma cacao HOM05D005327 ORTHO05D006655 9.6e-141 504.2 437 60.9
RcHm_v2.0_Chr4g0398191 Rosa chinensis HOM05D005327 ORTHO05D006655 1.3e-140 503.8 435 60.7
AT3G10700 Arabidopsis thaliana HOM05D005327 ORTHO05D006655 4.8e-140 501.9 432 61.1
AL3G22170 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 6.2e-140 501.5 432 61.1
Manes.15G099200 Manihot esculenta HOM05D005327 ORTHO05D006655 2.4e-139 499.6 434 59.2
ECA240G0405 Erigeron canadensis HOM05D005327 ORTHO05D006655 3.1e-139 499.2 414 63.3
Aa31LG3G3560 Aethionema arabicum HOM05D005327 ORTHO05D006655 1.2e-138 497.3 447 59.7
Carub.0003s0993 Capsella rubella HOM05D005327 ORTHO05D006655 1.2e-138 497.3 431 60.6
Sp3g09020 Schrenkiella parvula HOM05D005327 ORTHO05D006655 1.5e-138 496.9 431 60.8
Thhalv10020814m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 2.6e-138 496.1 431 60.6
Nn8g41033 Nelumbo nucifera HOM05D005327 ORTHO05D006655 3.4e-138 495.7 437 59.3
Sc14g0001350 Simmondsia chinensis HOM05D005327 ORTHO05D006655 2.2e-137 493.0 340 72.1
CARHR085280 Cardamine hirsuta HOM05D005327 ORTHO05D006655 8.4e-137 491.1 415 63.1
Haze_19034 Corylus avellana HOM05D005327 ORTHO05D006655 5.4e-136 488.4 453 58.3
FvH4_4g06430 Fragaria vesca HOM05D005327 ORTHO05D006655 2.7e-135 486.1 413 61.7
Potri.006G070500 Populus trichocarpa HOM05D005327 ORTHO05D006655 7.9e-135 484.6 439 59.9
Solyc07g014640.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 4.8e-132 475.3 408 61.0
SEGI_37801 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.2e-129 466.5 435 55.9
Nitab4.5_0004947g0030 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.9e-129 466.1 437 58.8
arahy.Tifrunner.gnm1.ann1.BX5CIC Arachis hypogaea HOM05D005327 ORTHO05D006655 3.5e-127 459.1 454 54.4
A05p38490 Brassica napus HOM05D005327 ORTHO05D006655 6.0e-127 458.4 433 57.5
BraA05t22640Z Brassica rapa HOM05D005327 ORTHO05D006655 6.0e-127 458.4 433 57.3
C05p57390 Brassica napus HOM05D005327 ORTHO05D006655 1.8e-126 456.8 433 57.5
arahy.Tifrunner.gnm1.ann1.X8NFG9 Arachis hypogaea HOM05D005327 ORTHO05D006655 6.7e-126 454.9 454 54.0
vmacro20765 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 2.4e-123 446.4 543 48.6
Prupe.1G067200 Prunus persica HOM05D005327 ORTHO05D006655 3.1e-123 446.0 354 65.8
Sabra06G0052400 Salix brachista HOM05D005327 ORTHO05D006655 6.9e-123 444.9 477 53.5
Nitab4.5_0000053g0140 Nicotiana tabacum HOM05D005327 ORTHO05D006655 2.0e-122 443.4 450 54.9
unitig_749.g14193 Utricularia gibba HOM05D005327 ORTHO05D006655 1.3e-121 440.7 423 58.4
Os04g0608100 Oryza sativa ssp. japonica HOM05D005327 ORTHO05D006655 3.2e-120 436.0 431 55.2
CDE06G0639 Ceratophyllum demersum HOM05D005327 ORTHO05D006655 5.1e-118 428.7 430 53.3
Sopen07g005500 Solanum pennellii HOM05D005327 ORTHO05D006655 5.1e-118 428.7 384 59.9
Zm00001eb071360 Zea mays HOM05D005327 ORTHO05D006655 7.4e-117 424.9 434 53.0
Peaxi162Scf00889g00111 Petunia axillaris HOM05D005327 ORTHO05D006655 8.2e-116 421.4 460 52.0
TPR.G25461 Trifolium pratense HOM05D005327 ORTHO05D006655 1.1e-115 421.0 362 61.9
Lj5A713T18 Lonicera japonica HOM05D005327 ORTHO05D006655 6.9e-115 418.3 481 50.7
SalBow6G3212 Salvia bowleyana HOM05D005327 ORTHO05D006655 2.0e-114 416.8 527 48.0
HPP92_000193 Vanilla planifolia HOM05D005327 ORTHO05D006655 4.2e-112 409.1 428 53.0
Pp3c23_15130 Physcomitrium patens HOM05D005327 ORTHO05D006655 9.3e-112 407.9 431 52.0
VMungo0251G1981 Vigna mungo HOM05D005327 ORTHO05D006655 1.8e-107 393.7 590 42.2
CANSAT01G0668 Cannabis sativa HOM05D005327 ORTHO05D006655 2.9e-105 386.3 434 51.8
unitig_77.g31482 Utricularia gibba HOM05D005327 ORTHO05D006655 3.2e-104 382.9 431 52.0
Mapoly0128s0021 Marchantia polymorpha HOM05D005327 ORTHO05D006655 2.1e-103 380.2 432 47.9
Sed0024331 Sechium edule HOM05D005327 ORTHO05D006655 6.7e-102 375.2 392 54.1
Hma1.2p1_0022F.1_g014810 Hydrangea macrophylla HOM05D005327 ORTHO05D006655 8.8e-102 374.8 283 68.9
SMO356G0298 Selaginella moellendorffii HOM05D005327 ORTHO05D006655 1.4e-99 367.5 430 47.2
BolC5t34395H Brassica oleracea HOM05D005327 ORTHO05D006655 7.7e-98 361.7 365 55.9
Sed0022639 Sechium edule HOM05D005327 ORTHO05D006655 6.1e-95 352.1 278 65.8
FAN07G1666 Fragaria x ananassa HOM05D005327 ORTHO05D006655 9.7e-93 344.7 291 62.5
Phvul.002G303800 Phaseolus vulgaris HOM05D005327 ORTHO05D006655 1.7e-92 344.0 296 59.8
FAN22G1263 Fragaria x ananassa HOM05D005327 ORTHO05D006655 1.8e-91 340.5 291 62.2
CAN.G33.6 Capsicum annuum HOM05D005327 ORTHO05D006655 5.9e-90 335.5 439 44.2
CBR_g4778 Chara braunii HOM05D005327 ORTHO05D000002 6.1e-87 325.5 378 50.0
QL11p009789 Quercus lobata HOM05D005327 ORTHO05D006655 6.1e-79 298.9 406 45.1
vmacro20791 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 7.5e-77 292.0 210 69.5
Oeu011821.1 Olea europaea HOM05D005327 ORTHO05D006655 8.3e-76 288.5 419 44.6
Sopen00g011970 Solanum pennellii HOM05D005327 ORTHO05D006655 3.5e-74 283.1 270 55.6
Solyc09g031880.3 Solanum lycopersicum HOM05D005327 ORTHO05D006655 3.1e-67 260.0 365 46.3
Gohir.A05G001766 Gossypium hirsutum HOM05D005327 ORTHO05D006655 4.1e-59 233.0 219 54.3
BcaC05g29437 Brassica carinata HOM05D005327 ORTHO05D006655 3.0e-57 226.9 217 53.9
MCO11G047 Micromonas commoda HOM05D005327 ORTHO05D006655 8.3e-52 208.8 416 33.9
AagrBONN_evm.TU.Sc2ySwM_344.300 Anthoceros agrestis HOM05D005327 ORTHO05D006655 4.6e-50 203.0 274 44.9
Gohir.A05G001832 Gossypium hirsutum HOM05D005327 ORTHO05D006655 1.7e-49 201.1 162 63.0
HPP92_000244 Vanilla planifolia HOM05D005327 ORTHO05D006655 2.2e-44 184.1 160 60.6
CSS0021007 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 7.1e-43 179.1 174 54.6
PGR044G0615 Punica granatum HOM05D005327 ORTHO05D006655 8.6e-41 172.2 167 58.1
Lj5A731T8 Lonicera japonica HOM05D005327 ORTHO05D006655 4.3e-40 169.9 157 54.8
COL.COLO4_23452 Corchorus olitorius HOM05D005327 ORTHO05D006655 3.5e-34 150.2 180 50.0
Thhalv10026961m.g Eutrema salsugineum HOM05D005327 ORTHO05D006655 3.9e-33 146.7 121 63.6
SEGI_09644 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 2.5e-32 144.1 161 47.8
HPP92_000243 Vanilla planifolia HOM05D005327 ORTHO05D006655 6.2e-31 139.4 135 53.3
Sopen09g026020 Solanum pennellii HOM05D005327 ORTHO05D006655 3.3e-24 117.1 100 60.0
SEGI_13698 Sequoiadendron giganteum HOM05D005327 ORTHO05D006655 1.1e-22 112.1 109 53.2
QL11p009810 Quercus lobata HOM05D005327 ORTHO05D006655 1.9e-19 101.3 73 60.3
TPR.G2647 Trifolium pratense HOM05D005327 ORTHO05D006655 4.2e-19 100.1 73 61.6
Gohir.D05G309350 Gossypium hirsutum HOM05D005327 ORTHO05D006655 5.1e-17 93.2 64 67.2
Gorai.009G329700 Gossypium raimondii HOM05D005327 ORTHO05D006655 2.5e-16 90.9 64 65.6
Gohir.D09G007150 Gossypium hirsutum HOM05D005327 ORTHO05D006655 5.6e-16 89.7 64 64.1
A01p41940 Brassica napus HOM05D005327 ORTHO05D006655 3.7e-15 87.0 65 60.0
QL11p009732 Quercus lobata HOM05D005327 ORTHO05D006655 6.2e-15 86.3 72 59.7
QL11p009727 Quercus lobata HOM05D005327 ORTHO05D006655 2.6e-13 80.9 62 59.7
Sabra18G0112000 Salix brachista HOM05D005327 ORTHO05D006655 4.5e-13 80.1 64 57.8
Pp3c19_13990 Physcomitrium patens HOM05D003564 ORTHO05D005332 9.9e-13 79.0 468 23.9
AL1G36750 Arabidopsis lyrata HOM05D005327 ORTHO05D006655 6.4e-12 76.3 83 50.6
SGA_v2.0_scaffold227G43230 Striga asiatica HOM05D003564 ORTHO05D005332 1.3e-09 68.6 432 25.2
BcaB04g17517 Brassica carinata HOM05D006002 ORTHO05D007651 1.5e-08 65.1 54 55.6
SHI03098 Sapria himalayana HOM05D005327 ORTHO05D006655 1.9e-08 64.7 45 60.0
AagrBONN_evm.TU.Sc2ySwM_117.3800 Anthoceros agrestis HOM05D003564 ORTHO05D005332 2.5e-08 64.3 468 23.9
Pp3c9_18770 Physcomitrium patens HOM05D003564 ORTHO05D005332 3.3e-08 63.9 467 23.6
MCO14G377 Micromonas commoda HOM05D003564 ORTHO05D005332 4.3e-08 63.5 431 23.9
Aa31LG5G17120 Aethionema arabicum HOM05D003564 ORTHO05D005332 9.6e-08 62.4 450 23.6
vmacro20790 Vaccinium macrocarpon HOM05D005327 ORTHO05D006655 9.6e-08 62.4 38 78.9
CSS0022249 Camellia sinensis var. sinensis HOM05D003564 ORTHO05D005332 1.6e-07 61.6 444 24.1
Cfa015286 Carpinus fangiana HOM05D003564 ORTHO05D005332 1.6e-07 61.6 319 25.1
Lj6A693T63 Lonicera japonica HOM05D003564 ORTHO05D005332 1.6e-07 61.6 486 22.6
SMO340G0013 Selaginella moellendorffii HOM05D003564 ORTHO05D005332 1.6e-07 61.6 290 27.2
Aa31LG2G16960 Aethionema arabicum HOM05D003564 ORTHO05D005332 2.1e-07 61.2 445 23.6
Ca_21413_v3 Cicer arietinum L. HOM05D003564 ORTHO05D005332 2.1e-07 61.2 316 25.6
TPR.G25421 Trifolium pratense HOM05D003564 ORTHO05D005332 2.1e-07 61.2 316 26.3
QL11p009748 Quercus lobata HOM05D005327 ORTHO05D000004 4.8e-07 60.1 35 82.9
Haze_01331 Corylus avellana HOM05D003564 ORTHO05D005332 6.2e-07 59.7 325 27.1
Haze_01336 Corylus avellana HOM05D003564 ORTHO05D005332 6.2e-07 59.7 325 27.1
MD13G1150000 Malus domestica HOM05D003564 ORTHO05D005332 8.2e-07 59.3 421 24.2
Lj6g0012179 Lotus japonicus HOM05D003564 ORTHO05D005332 1.1e-06 58.9 499 21.4
CSS0006230 Camellia sinensis var. sinensis HOM05D005327 ORTHO05D006655 1.4e-06 58.5 33 84.8
SHI03089 Sapria himalayana HOM05D005327 ORTHO05D006655 1.4e-06 58.5 35 77.1
EL10Ac3g05000 Beta vulgaris HOM05D003564 ORTHO05D005332 1.8e-06 58.2 299 25.8
ECA246G5316 Erigeron canadensis HOM05D003564 ORTHO05D005332 1.8e-06 58.2 316 25.9
Lj3A833G36 Lonicera japonica HOM05D003564 ORTHO05D005332 1.8e-06 58.2 465 22.4
arahy.Tifrunner.gnm1.ann1.TSV22Z Arachis hypogaea HOM05D026511 ORTHO05D038857 2.4e-06 57.8 45 57.8
Ciclev10004815m.g Citrus clementina HOM05D003564 ORTHO05D005332 2.4e-06 57.8 306 27.8
Oeu027343.1 Olea europaea HOM05D003564 ORTHO05D005332 2.4e-06 57.8 314 25.5
A05p41470 Brassica napus HOM05D003564 ORTHO05D005332 4.0e-06 57.0 471 22.3
Phvul.003G116700 Phaseolus vulgaris HOM05D003564 ORTHO05D005332 4.0e-06 57.0 320 25.6
VMungo0647G1266 Vigna mungo HOM05D002718 ORTHO05D003269 4.0e-06 57.0 242 26.0
BraA05t22867Z Brassica rapa HOM05D003564 ORTHO05D005332 5.3e-06 56.6 472 22.5
Glyma.14G138300 Glycine max HOM05D002718 ORTHO05D003269 5.3e-06 56.6 225 24.9
BolC5t34726H Brassica oleracea HOM05D003564 ORTHO05D005332 6.9e-06 56.2 470 22.8
Glyma.07G237700 Glycine max HOM05D003564 ORTHO05D005332 6.9e-06 56.2 316 25.0
MD16G1150400 Malus domestica HOM05D003564 ORTHO05D005332 6.9e-06 56.2 420 24.8
Psat4g021800 Pisum sativum HOM05D003564 ORTHO05D005332 6.9e-06 56.2 305 24.9
THA.LOC104818876 Tarenaya hassleriana HOM05D003564 ORTHO05D005332 6.9e-06 56.2 472 21.8
VMungo1215G0911 Vigna mungo HOM05D003564 ORTHO05D005332 6.9e-06 56.2 320 25.3
CiPaw.02G073000 Carya illinoinensis HOM05D003564 ORTHO05D005332 9.0e-06 55.8 267 28.5
Lj4g0010100 Lotus japonicus HOM05D003564 ORTHO05D005332 9.0e-06 55.8 315 24.8


User provided reference genes

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