Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 4.5e-109 397.9 197 100.0
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.0e-76 288.9 223 66.4
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 3.0e-76 288.9 223 66.8
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 2.4e-70 269.2 223 64.6
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.4e-57 226.9 224 54.0
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 3.1e-57 225.7 232 52.2
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 4.0e-57 225.3 230 53.0
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 4.0e-57 225.3 232 53.4
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 4.0e-57 225.3 233 53.6
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 6.9e-57 224.6 232 53.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 2.0e-56 223.0 232 53.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 3.4e-56 222.2 228 53.5
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.5e-56 221.9 229 52.8
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.8e-56 221.5 226 54.0
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 7.6e-56 221.1 233 52.8
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 9.9e-56 220.7 229 51.5
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 9.9e-56 220.7 229 51.5
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.3e-55 220.3 229 51.5
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.7e-55 219.9 228 53.1
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 1.7e-55 219.9 232 53.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.7e-55 219.9 226 55.8
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 2.2e-55 219.5 221 53.4
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 2.2e-55 219.5 221 53.4
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 3.8e-55 218.8 221 53.4
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 3.8e-55 218.8 221 53.4
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 3.8e-55 218.8 226 52.2
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.9e-55 218.4 232 52.6
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 4.9e-55 218.4 232 52.6
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 6.4e-55 218.0 221 53.4
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 6.4e-55 218.0 221 52.9
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 6.4e-55 218.0 229 52.4
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 8.4e-55 217.6 231 53.7
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 8.4e-55 217.6 229 51.1
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-54 217.2 233 52.8
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 1.1e-54 217.2 221 52.9
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.1e-54 217.2 232 52.2
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 1.9e-54 216.5 221 52.9
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 1.9e-54 216.5 226 51.8
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 2.4e-54 216.1 221 52.9
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.4e-54 216.1 229 54.6
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 4.2e-54 215.3 230 51.3
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 4.2e-54 215.3 232 52.2
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 5.4e-54 214.9 220 53.6
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 5.4e-54 214.9 221 52.9
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 7.1e-54 214.5 230 52.2
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 7.1e-54 214.5 232 50.4
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 9.3e-54 214.2 226 52.2
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 9.3e-54 214.2 232 51.7
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 9.3e-54 214.2 230 52.2
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 1.2e-53 213.8 229 52.0
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 1.2e-53 213.8 230 52.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 1.6e-53 213.4 225 53.3
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 2.1e-53 213.0 226 50.4
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 2.7e-53 212.6 226 52.2
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.5e-53 212.2 229 51.5
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 4.6e-53 211.8 212 55.7
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 4.6e-53 211.8 232 52.2
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 4.6e-53 211.8 232 51.7
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 6.0e-53 211.5 230 51.7
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 1.0e-52 210.7 226 53.5
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 1.0e-52 210.7 168 64.9
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.3e-52 210.3 221 52.5
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 1.3e-52 210.3 226 50.9
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 1.8e-52 209.9 232 51.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 2.3e-52 209.5 227 53.7
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 2.3e-52 209.5 232 50.4
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 3.0e-52 209.1 221 52.0
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 3.9e-52 208.8 232 51.3
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 3.9e-52 208.8 220 52.3
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 5.1e-52 208.4 220 52.3
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 5.1e-52 208.4 229 54.1
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 6.7e-52 208.0 232 50.4
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 6.7e-52 208.0 220 53.6
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.9e-51 206.5 221 54.3
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 1.9e-51 206.5 220 51.8
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.5e-51 206.1 224 48.2
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 2.5e-51 206.1 227 51.5
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 2.5e-51 206.1 226 50.4
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 4.3e-51 205.3 219 51.6
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 4.3e-51 205.3 229 53.7
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 4.3e-51 205.3 223 50.2
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 4.3e-51 205.3 229 51.1
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 4.3e-51 205.3 225 52.4
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 5.6e-51 204.9 226 51.8
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 9.6e-51 204.1 226 50.4
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.3e-50 203.8 230 51.3
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 2.1e-50 203.0 234 50.4
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 2.8e-50 202.6 226 52.2
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.7e-50 202.2 227 51.1
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 6.2e-50 201.4 225 50.7
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 6.2e-50 201.4 228 52.2
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 6.2e-50 201.4 225 52.0
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 8.1e-50 201.1 230 49.6
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.1e-49 200.7 230 48.7
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.1e-49 200.7 211 53.6
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.8e-49 199.9 206 52.9
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.8e-49 199.9 226 51.8
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.4e-49 199.5 220 51.8
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 2.4e-49 199.5 227 49.8
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 5.3e-49 198.4 227 51.5
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 6.9e-49 198.0 225 52.0
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 6.9e-49 198.0 224 50.9
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 9.0e-49 197.6 232 50.4
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 9.0e-49 197.6 233 50.2
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 1.5e-48 196.8 225 52.0
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 1.5e-48 196.8 232 50.4
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 2.6e-48 196.1 220 49.5
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 3.4e-48 195.7 226 49.6
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.5e-48 195.3 232 50.0
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 4.5e-48 195.3 220 51.8
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 5.8e-48 194.9 229 48.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 7.6e-48 194.5 222 49.1
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.0e-47 194.1 220 49.5
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 1.0e-47 194.1 228 49.6
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 1.3e-47 193.7 220 50.5
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 6.5e-47 191.4 221 48.9
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 1.4e-46 190.3 240 46.2
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 1.4e-46 190.3 266 44.0
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 1.4e-46 190.3 222 50.0
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 3.2e-46 189.1 221 48.4
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.2e-46 188.7 235 47.2
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 5.5e-46 188.3 228 49.1
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 2.1e-45 186.4 218 50.5
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 3.5e-45 185.7 222 48.6
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.3e-44 183.0 215 50.7
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 3.0e-44 182.6 222 48.6
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 3.0e-44 182.6 222 48.6
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 3.9e-44 182.2 222 48.6
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 5.1e-44 181.8 203 52.7
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 8.7e-44 181.0 224 47.8
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.1e-43 180.6 222 48.6
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 1.9e-43 179.9 222 48.2
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 9.6e-43 177.6 227 45.8
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 4.8e-42 175.3 141 64.5
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.2e-40 170.6 221 44.3
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 2.0e-40 169.9 231 45.5
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 2.0e-40 169.9 193 53.9
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.6e-40 169.5 231 44.6
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 4.5e-40 168.7 142 61.3
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.8e-40 168.3 141 60.3
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.0e-39 167.5 219 45.2
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 1.3e-39 167.2 219 45.2
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.2e-39 166.4 226 46.0
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 2.5e-38 162.9 142 61.3
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 2.1e-37 159.8 225 44.0
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 3.4e-32 142.5 225 39.6
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 4.5e-32 142.1 226 41.2
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 1.1e-27 127.5 189 40.7
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.2e-26 123.2 251 32.7
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 4.5e-24 115.5 311 28.3
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 2.2e-23 113.2 115 51.3
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 2.9e-23 112.8 191 40.3
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 1.1e-22 110.9 71 73.2
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 3.2e-22 109.4 187 35.8
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.6e-21 105.9 323 27.2
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.3e-19 99.4 251 27.1
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.7e-18 97.1 120 47.5
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 3.7e-18 95.9 322 26.4
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.4e-17 94.0 58 79.3
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 3.2e-14 82.8 153 36.6
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 3.6e-13 79.3 56 69.6
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 1.0e-12 77.8 54 72.2
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 2.4e-09 66.6 68 45.6


User provided reference genes

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