Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044290 Amaranthus hybridus HOM05D007692 ORTHO05D009696 5.5e-48 194.1 108 100.0
EL10Ac2g03778 Beta vulgaris HOM05D007692 ORTHO05D009696 3.6e-31 138.3 110 68.2
QL02p017043 Quercus lobata HOM05D007692 ORTHO05D009696 5.5e-24 114.4 108 55.6
QL02p017055 Quercus lobata HOM05D007692 ORTHO05D009696 1.2e-23 113.2 108 55.6
Glyma.17G225900 Glycine max HOM05D007692 ORTHO05D009696 6.1e-23 110.9 102 58.8
Medtr1g015470 Medicago truncatula HOM05D007692 ORTHO05D009696 1.5e-21 106.3 103 53.4
Ciclev10010178m.g Citrus clementina HOM05D007692 ORTHO05D009696 2.0e-21 105.9 103 62.1
VMungo0647G2522 Vigna mungo HOM05D007692 ORTHO05D009696 2.0e-21 105.9 102 53.9
Psat6g022960 Pisum sativum HOM05D007692 ORTHO05D009696 4.4e-21 104.8 102 52.9
TPR.G38893 Trifolium pratense HOM05D007692 ORTHO05D009696 9.7e-21 103.6 109 50.5
Lj5g0021751 Lotus japonicus HOM05D007692 ORTHO05D009696 2.8e-20 102.1 109 48.6
Nn2g12400 Nelumbo nucifera HOM05D007692 ORTHO05D009696 3.7e-20 101.7 97 53.6
Glyma.06G056100 Glycine max HOM05D007692 ORTHO05D009696 4.8e-20 101.3 102 54.9
Haze_18297 Corylus avellana HOM05D007692 ORTHO05D009696 6.3e-20 100.9 98 57.1
Sabra06G0170400 Salix brachista HOM05D007692 ORTHO05D009696 6.3e-20 100.9 102 51.0
Thecc.09G063700 Theobroma cacao HOM05D007692 ORTHO05D009696 6.3e-20 100.9 103 51.5
arahy.Tifrunner.gnm1.ann1.0E4SK3 Arachis hypogaea HOM05D007692 ORTHO05D009696 8.2e-20 100.5 102 56.9
Cfa017868 Carpinus fangiana HOM05D007692 ORTHO05D009696 8.2e-20 100.5 98 57.1
Duzib168G1711 Durio zibethinus HOM05D007692 ORTHO05D009696 1.1e-19 100.1 103 51.5
CANSAT25G1329 Cannabis sativa HOM05D007692 ORTHO05D009696 1.4e-19 99.8 109 53.2
Eucgr.C00729 Eucalyptus grandis HOM05D007692 ORTHO05D009696 1.4e-19 99.8 110 51.8
MD15G1049600 Malus domestica HOM05D007692 ORTHO05D009696 1.8e-19 99.4 103 52.4
CiPaw.15G091700 Carya illinoinensis HOM05D007692 ORTHO05D009696 2.4e-19 99.0 112 50.9
Manes.16G085800 Manihot esculenta HOM05D007692 ORTHO05D009696 2.4e-19 99.0 102 52.0
Potri.006G220500 Populus trichocarpa HOM05D007692 ORTHO05D009696 2.4e-19 99.0 109 47.7
Cpa.g.sc126.21 Carica papaya HOM05D007692 ORTHO05D009696 3.1e-19 98.6 109 47.7
DCAR_001232 Daucus carota HOM05D006390 ORTHO05D007899 3.1e-19 98.6 101 48.5
FvH4_2g30960 Fragaria vesca HOM05D007692 ORTHO05D009696 6.9e-19 97.4 103 52.4
Hma1.2p1_0278F.1_g111850 Hydrangea macrophylla HOM05D007692 ORTHO05D009696 9.1e-19 97.1 102 48.0
MD08G1071600 Malus domestica HOM05D007692 ORTHO05D009696 9.1e-19 97.1 103 51.5
Sed0007061 Sechium edule HOM05D007692 ORTHO05D009696 1.2e-18 96.7 114 50.9
Sc06g0001120 Simmondsia chinensis HOM05D007692 ORTHO05D009696 1.2e-18 96.7 95 55.8
Solyc08g061640.1 Solanum lycopersicum HOM05D007692 ORTHO05D009696 1.2e-18 96.7 110 48.2
Sopen08g017100 Solanum pennellii HOM05D007692 ORTHO05D009696 1.2e-18 96.7 110 48.2
PGSC0003DMG400045083 Solanum tuberosum HOM05D007692 ORTHO05D009696 1.2e-18 96.7 110 48.2
TAR624G0897 Trochodendron aralioides HOM05D007692 ORTHO05D009696 1.2e-18 96.7 97 52.6
Dinv22937 Davidia involucrata HOM05D007692 ORTHO05D009696 1.5e-18 96.3 101 53.5
Nitab4.5_0008422g0010 Nicotiana tabacum HOM05D007692 ORTHO05D009696 1.5e-18 96.3 110 47.3
CAN.G567.82 Capsicum annuum HOM05D007692 ORTHO05D009696 3.4e-18 95.1 110 47.3
COL.COLO4_21142 Corchorus olitorius HOM05D007692 ORTHO05D009696 3.4e-18 95.1 97 48.5
Phvul.009G082200 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 3.4e-18 95.1 102 50.0
MELO3C016914.2 Cucumis melo HOM05D007692 ORTHO05D009696 5.9e-18 94.4 105 53.3
CsaV3_4G036060 Cucumis sativus L. HOM05D007692 ORTHO05D009696 5.9e-18 94.4 105 53.3
Nitab4.5_0000446g0120 Nicotiana tabacum HOM05D007692 ORTHO05D009696 7.7e-18 94.0 110 45.5
Peaxi162Scf00486g00102 Petunia axillaris HOM05D007692 ORTHO05D009696 7.7e-18 94.0 97 52.6
RcHm_v2.0_Chr6g0311901 Rosa chinensis HOM05D007692 ORTHO05D009696 7.7e-18 94.0 103 49.5
THA.LOC104810956 Tarenaya hassleriana HOM05D007692 ORTHO05D009696 1.0e-17 93.6 97 50.5
PSO675G1902 Papaver somniferum HOM05D007692 ORTHO05D009696 1.3e-17 93.2 98 53.1
VMungo1309G1304 Vigna mungo HOM05D007692 ORTHO05D009696 1.3e-17 93.2 102 49.0
ClCG05G015760 Citrullus lanatus HOM05D007692 ORTHO05D009696 2.2e-17 92.4 113 49.6
Gohir.D05G040100 Gossypium hirsutum HOM05D007692 ORTHO05D009696 2.2e-17 92.4 103 50.5
Gorai.009G040500 Gossypium raimondii HOM05D007692 ORTHO05D009696 2.2e-17 92.4 103 50.5
A10p18810 Brassica napus HOM05D007692 ORTHO05D009696 2.9e-17 92.0 100 52.0
C09p54830 Brassica napus HOM05D007692 ORTHO05D009696 2.9e-17 92.0 100 52.0
BolC9t58343H Brassica oleracea HOM05D007692 ORTHO05D009696 2.9e-17 92.0 100 52.0
BraA10t43961Z Brassica rapa HOM05D007692 ORTHO05D009696 2.9e-17 92.0 100 52.0
PGR031G0311 Punica granatum HOM05D007692 ORTHO05D009696 2.9e-17 92.0 100 53.0
Thhalv10015977m.g Eutrema salsugineum HOM05D007692 ORTHO05D009696 3.8e-17 91.7 100 51.0
PSO541G2080 Papaver somniferum HOM05D007692 ORTHO05D009696 3.8e-17 91.7 98 53.1
SGA_v2.0_scaffold20G09157 Striga asiatica HOM05D006390 ORTHO05D007899 6.5e-17 90.9 106 45.3
CARHR191630 Cardamine hirsuta HOM05D007692 ORTHO05D009696 8.5e-17 90.5 93 53.8
Prupe.1G403900 Prunus persica HOM05D007692 ORTHO05D009696 8.5e-17 90.5 103 48.5
Phvul.001G038600 Phaseolus vulgaris HOM05D007692 ORTHO05D009696 1.1e-16 90.1 89 51.7
BcaB08g36470 Brassica carinata HOM05D007692 ORTHO05D009696 2.5e-16 89.0 103 49.5
Lsat_1_v5_gn_7_58320 Lactuca sativa HOM05D006390 ORTHO05D007899 2.5e-16 89.0 104 48.1
Nn8g39911 Nelumbo nucifera HOM05D007692 ORTHO05D009696 2.5e-16 89.0 102 51.0
Gohir.A05G038600 Gossypium hirsutum HOM05D007692 ORTHO05D009696 7.2e-16 87.4 103 46.6
Lalb_Chr11g0063341 Lupinus albus HOM05D007692 ORTHO05D009696 1.2e-15 86.7 109 48.6
TWI63G1278 Tripterygium wilfordii HOM05D007692 ORTHO05D009696 1.6e-15 86.3 104 50.0
ECA240G2866 Erigeron canadensis HOM05D000002 ORTHO05D000001 2.7e-15 85.5 97 52.6
SalBow4G0926 Salvia bowleyana HOM05D007692 ORTHO05D009696 2.7e-15 85.5 104 46.2
Lj1g0020593 Lotus japonicus HOM05D007692 ORTHO05D009696 3.6e-15 85.1 110 52.7
TPR.G3568 Trifolium pratense HOM05D007692 ORTHO05D009696 3.6e-15 85.1 111 41.4
HanXRQChr03g0065641 Helianthus annuus HOM05D007692 ORTHO05D009696 4.7e-15 84.7 107 51.4
Sp6g23280 Schrenkiella parvula HOM05D007692 ORTHO05D009696 6.1e-15 84.3 93 54.8
HPP92_004156 Vanilla planifolia HOM05D007692 ORTHO05D009696 6.1e-15 84.3 100 43.0
Medtr3g105090 Medicago truncatula HOM05D007692 ORTHO05D009696 8.0e-15 84.0 101 45.5
MBI13_g42817_MAGBIO Magnolia biondii HOM05D007692 ORTHO05D009696 1.0e-14 83.6 97 50.5
Oeu003971.1 Olea europaea HOM05D007692 ORTHO05D009696 1.4e-14 83.2 109 45.0
Aqoxy2G03896 Aquilegia oxysepala HOM05D007692 ORTHO05D009696 2.3e-14 82.4 99 45.5
Zm00001eb005780 Zea mays HOM05D007692 ORTHO05D009696 1.1e-13 80.1 100 45.0
unitig_32.g11527 Utricularia gibba HOM05D007692 ORTHO05D009696 1.5e-13 79.7 95 44.2
CSS0041722 Camellia sinensis var. sinensis HOM05D007692 ORTHO05D009696 2.0e-13 79.3 86 47.7
CDE04G2134 Ceratophyllum demersum HOM05D007692 ORTHO05D009696 9.7e-13 77.0 110 45.5
Carub.0006s1955 Capsella rubella HOM05D007692 ORTHO05D009696 1.3e-12 76.6 93 52.7
ATR0598G206 Amborella trichopoda HOM05D007692 ORTHO05D009696 3.7e-12 75.1 97 43.3
AT5G21910 Arabidopsis thaliana HOM05D007692 ORTHO05D009696 3.7e-12 75.1 93 51.6
Medtr1g015490 Medicago truncatula HOM05D007692 ORTHO05D009696 4.8e-12 74.7 88 44.3
Cc08_g01120 Coffea canephora HOM05D007692 ORTHO05D009696 1.8e-11 72.8 110 47.3
Os03g0176900 Oryza sativa ssp. japonica HOM05D007692 ORTHO05D009696 5.3e-11 71.2 100 43.0
Carub.0005s0963 Capsella rubella HOM05D007692 ORTHO05D009696 2.6e-10 68.9 94 48.9
Psat5g030520 Pisum sativum HOM05D007692 ORTHO05D009696 1.0e-09 67.0 81 43.2
Duzib150G0238 Durio zibethinus HOM05D007692 ORTHO05D009696 5.0e-09 64.7 126 38.9
Psat6g004480 Pisum sativum HOM05D007692 ORTHO05D009696 1.5e-08 63.2 73 46.6
Atru.chr7.1844 Acer truncatum HOM05D007692 ORTHO05D009696 1.4e-06 56.6 68 39.7
Lalb_Chr14g0366461 Lupinus albus HOM05D007692 ORTHO05D009696 1.8e-06 56.2 68 39.7


User provided reference genes

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