Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 2.0e-59 232.3 122 100.0
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 5.8e-38 161.0 121 71.9
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.3e-37 159.8 112 73.2
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 3.7e-37 158.3 121 70.2
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.4e-37 157.5 121 71.1
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 1.1e-33 146.7 121 66.9
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 9.6e-33 143.7 115 65.2
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 9.6e-33 143.7 115 65.2
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 2.6e-30 135.6 117 62.4
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 2.9e-29 132.1 117 63.2
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 3.8e-29 131.7 120 63.3
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.8e-29 131.7 118 61.9
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 4.9e-29 131.3 108 65.7
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 4.9e-29 131.3 118 60.2
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.4e-29 131.0 102 64.7
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.4e-29 130.6 119 58.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 8.4e-29 130.6 119 58.8
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.9e-28 129.4 113 57.5
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 2.4e-28 129.0 103 64.1
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.2e-28 128.6 103 64.1
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 3.2e-28 128.6 117 61.5
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.2e-28 128.6 117 61.5
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 3.2e-28 128.6 118 58.5
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 3.2e-28 128.6 121 60.3
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 4.2e-28 128.3 103 66.0
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.4e-28 127.9 117 61.5
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.4e-28 127.9 117 61.5
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 5.4e-28 127.9 117 61.5
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 5.4e-28 127.9 113 57.5
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 9.3e-28 127.1 113 59.3
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 9.3e-28 127.1 113 59.3
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 9.3e-28 127.1 117 59.0
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 9.3e-28 127.1 103 65.0
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 1.2e-27 126.7 105 64.8
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 1.6e-27 126.3 117 59.8
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.6e-27 126.3 122 56.6
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 2.1e-27 125.9 103 68.0
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 2.1e-27 125.9 118 60.2
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.7e-27 125.6 101 61.4
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 2.7e-27 125.6 101 61.4
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 3.5e-27 125.2 118 59.3
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 3.5e-27 125.2 118 57.6
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 3.5e-27 125.2 107 65.4
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 3.5e-27 125.2 103 64.1
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 3.5e-27 125.2 118 57.6
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 4.6e-27 124.8 105 63.8
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 4.6e-27 124.8 121 57.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 6.0e-27 124.4 113 60.2
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 6.0e-27 124.4 113 60.2
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 6.0e-27 124.4 113 60.2
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 7.8e-27 124.0 105 63.8
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 7.8e-27 124.0 121 59.5
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.0e-26 123.6 115 59.1
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 1.0e-26 123.6 101 60.4
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.3e-26 123.2 105 61.9
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.7e-26 122.9 118 58.5
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 2.3e-26 122.5 119 59.7
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 2.3e-26 122.5 102 60.8
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 5.1e-26 121.3 117 56.4
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 5.1e-26 121.3 121 57.9
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 5.1e-26 121.3 117 53.8
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 5.1e-26 121.3 113 60.2
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 6.6e-26 120.9 118 55.9
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 6.6e-26 120.9 121 55.4
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.1e-25 120.2 117 55.6
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.1e-25 120.2 115 58.3
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 1.5e-25 119.8 113 61.1
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.5e-25 119.8 103 62.1
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 1.9e-25 119.4 103 62.1
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 1.9e-25 119.4 121 57.0
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 1.9e-25 119.4 102 58.8
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 1.9e-25 119.4 103 60.2
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 1.9e-25 119.4 116 58.6
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 2.5e-25 119.0 102 59.8
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 3.3e-25 118.6 105 60.0
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 4.3e-25 118.2 122 54.1
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 5.6e-25 117.9 91 68.1
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.3e-24 116.7 106 57.5
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.6e-24 116.3 101 61.4
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 1.6e-24 116.3 103 61.2
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 2.1e-24 115.9 105 59.0
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 2.1e-24 115.9 106 57.5
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.1e-24 115.9 101 61.4
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.1e-24 115.9 101 60.4
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 2.8e-24 115.5 103 60.2
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 3.6e-24 115.2 103 61.2
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 3.6e-24 115.2 116 56.9
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 4.8e-24 114.8 114 56.1
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 8.1e-24 114.0 121 56.2
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.1e-23 113.6 106 56.6
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.4e-23 113.2 118 54.2
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 1.8e-23 112.8 118 52.5
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 1.8e-23 112.8 103 61.2
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 3.1e-23 112.1 121 53.7
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 4.0e-23 111.7 103 60.2
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 6.9e-23 110.9 103 61.2
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 9.0e-23 110.5 117 53.0
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.5e-22 109.8 101 53.5
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.0e-22 109.4 101 59.4
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 2.0e-22 109.4 111 56.8
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 2.6e-22 109.0 114 55.3
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.4e-22 108.6 101 58.4
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 4.4e-22 108.2 120 51.7
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 7.6e-22 107.5 102 54.9
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.3e-21 106.7 103 58.3
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-21 106.7 90 62.2
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 1.7e-21 106.3 113 55.8
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 1.7e-21 106.3 125 49.6
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.9e-21 105.5 103 53.4
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 3.2e-20 102.1 110 51.8
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 5.4e-20 101.3 112 50.0
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 9.3e-20 100.5 104 56.7
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 2.1e-19 99.4 107 49.5
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 2.7e-19 99.0 101 51.5
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 2.7e-19 99.0 93 55.9
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 3.5e-19 98.6 101 52.5
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 1.3e-18 96.7 81 61.7
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 3.9e-18 95.1 103 47.6
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 2.5e-17 92.4 105 52.4
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 2.5e-17 92.4 119 48.7
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.3e-17 92.0 105 51.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.3e-17 91.7 101 50.5
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 5.6e-17 91.3 66 69.7
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 9.6e-17 90.5 108 50.9
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.6e-16 89.7 126 44.4
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 1.6e-16 89.7 105 47.6
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.8e-16 89.0 102 50.0
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 4.8e-16 88.2 104 51.9
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 8.1e-16 87.4 109 47.7
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.1e-15 87.0 104 47.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 1.4e-15 86.7 102 50.0
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 1.4e-15 86.7 103 49.5
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 1.8e-15 86.3 104 46.2
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.4e-15 85.9 121 44.6
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.4e-15 85.9 121 44.6
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 2.4e-15 85.9 100 47.0
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 2.6e-14 82.4 107 45.8
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 5.8e-14 81.3 105 45.7
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.8e-13 78.6 101 48.5
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-12 77.0 81 54.3
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 1.1e-12 77.0 101 49.5
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 1.9e-12 76.3 91 52.7
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 1.9e-12 76.3 105 41.9
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 2.4e-12 75.9 106 41.5
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 3.2e-12 75.5 111 42.3
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 9.3e-12 73.9 67 59.7
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 4.6e-11 71.6 64 60.9
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 7.9e-11 70.9 65 60.0
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 5.1e-10 68.2 113 42.5
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.9e-09 66.2 51 64.7
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 9.6e-09 63.9 49 65.3
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 1.6e-08 63.2 63 50.8
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.8e-08 62.4 44 72.7
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.7e-08 62.0 37 78.4
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 1.1e-07 60.5 60 56.7
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.1e-07 60.5 53 58.5
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 1.4e-07 60.1 114 36.0
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 2.4e-07 59.3 122 41.0
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.2e-06 57.0 67 43.3


User provided reference genes

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