Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 1.1e-114 416.8 223 100.0
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 5.2e-69 265.0 238 59.2
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.3e-63 245.7 265 52.1
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 5.2e-61 238.4 255 51.8
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 6.8e-61 238.0 245 50.6
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 7.5e-60 234.6 253 49.4
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 1.7e-59 233.4 249 48.6
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 2.2e-59 233.0 264 49.6
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 2.9e-59 232.6 247 48.6
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 3.7e-59 232.3 256 48.8
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 3.7e-59 232.3 251 50.2
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.1e-58 230.7 251 49.4
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 1.4e-58 230.3 245 50.2
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 1.4e-58 230.3 256 48.4
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.4e-58 230.3 252 48.8
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 1.4e-58 230.3 253 49.8
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.9e-58 229.9 273 46.5
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 1.9e-58 229.9 270 47.8
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 9.2e-58 227.6 249 48.6
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 9.2e-58 227.6 247 49.8
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 1.2e-57 227.3 245 49.0
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 2.0e-57 226.5 245 49.8
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 1.7e-56 223.4 153 69.3
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 3.0e-56 222.6 153 70.6
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.9e-56 222.2 248 50.0
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 5.0e-56 221.9 263 48.3
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 5.0e-56 221.9 248 50.4
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 5.0e-56 221.9 249 49.8
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 5.0e-56 221.9 241 50.6
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 5.0e-56 221.9 266 51.1
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 6.6e-56 221.5 251 47.4
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 8.6e-56 221.1 261 46.7
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.5e-55 219.5 256 49.2
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.3e-55 219.2 254 50.0
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 3.3e-55 219.2 254 50.0
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 1.2e-54 217.2 259 47.5
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 1.6e-54 216.9 153 69.3
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 2.1e-54 216.5 260 45.4
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 3.6e-54 215.7 253 49.4
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 6.2e-54 214.9 273 46.2
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 8.1e-54 214.5 274 44.9
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.1e-53 214.2 273 44.3
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 1.1e-53 214.2 154 64.9
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 1.1e-53 214.2 248 48.0
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 1.8e-53 213.4 154 68.2
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 2.3e-53 213.0 153 68.6
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 8.9e-53 211.1 178 61.2
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 1.5e-52 210.3 245 45.7
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 1.5e-52 210.3 244 48.4
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 3.4e-52 209.1 247 45.7
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 4.4e-52 208.8 234 52.6
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 5.8e-52 208.4 249 45.8
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 1.3e-51 207.2 168 62.5
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.2e-51 206.5 151 66.9
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 2.9e-51 206.1 253 46.2
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 2.9e-51 206.1 225 48.9
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 3.7e-51 205.7 154 66.2
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 4.9e-51 205.3 262 45.0
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 6.4e-51 204.9 260 45.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 8.3e-51 204.5 232 48.3
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 8.3e-51 204.5 257 45.1
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 4.1e-50 202.2 248 47.2
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 5.4e-50 201.8 255 43.1
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.2e-49 200.7 242 46.3
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 2.7e-49 199.5 243 44.0
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.0e-49 198.4 153 61.4
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 2.3e-48 196.4 392 34.9
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 8.6e-48 194.5 230 45.2
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 1.1e-47 194.1 260 43.5
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 4.3e-47 192.2 139 66.2
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.8e-46 189.5 160 61.2
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.1e-45 187.6 156 60.3
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.3e-45 186.4 261 43.3
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 5.2e-45 185.3 159 58.5
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 1.5e-44 183.7 261 42.5
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 1.5e-44 183.7 150 61.3
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 1.3e-43 180.6 155 58.1
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 1.7e-43 180.3 266 42.9
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 3.8e-43 179.1 251 44.2
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 1.9e-42 176.8 152 57.2
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 2.4e-42 176.4 170 56.5
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 2.3e-40 169.9 119 68.9
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 8.6e-40 167.9 153 58.8
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 7.3e-39 164.9 245 42.9
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.2e-38 164.1 153 54.2
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 6.2e-38 161.8 153 52.3
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 2.4e-37 159.8 234 41.5
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.2e-36 157.5 122 62.3
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 9.9e-36 154.5 127 59.1
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 4.9e-35 152.1 239 38.1
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 9.3e-34 147.9 187 46.5
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.6e-33 145.6 138 58.0
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 4.6e-33 145.6 138 58.0
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 1.5e-31 140.6 206 40.8
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 1.9e-31 140.2 137 53.3
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 2.5e-31 139.8 198 41.9
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 7.3e-31 138.3 206 39.3
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 8.1e-30 134.8 222 39.2
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 4.9e-27 125.6 112 56.2
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 2.4e-26 123.2 153 49.7
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 3.2e-26 122.9 234 35.9
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 7.1e-26 121.7 99 64.6
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 1.0e-24 117.9 260 34.2
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 1.1e-23 114.4 159 41.5
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 1.8e-21 107.1 193 35.8
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 9.0e-21 104.8 65 70.8
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 2.0e-20 103.6 183 37.2
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 7.6e-20 101.7 89 57.3
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 7.6e-20 101.7 89 57.3
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 1.7e-19 100.5 56 75.0
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 5.5e-18 95.5 72 61.1
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-16 90.9 167 37.1
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 2.3e-16 90.1 256 27.7
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 3.3e-15 86.3 70 55.7
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 3.4e-12 76.3 133 33.8
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 3.4e-12 76.3 133 33.8
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 3.4e-12 76.3 133 33.8
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 7.6e-12 75.1 133 33.8
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 2.2e-11 73.6 68 51.5
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 3.8e-11 72.8 149 34.2
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 3.2e-10 69.7 129 32.6
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.8e-08 63.9 37 67.6
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 2.3e-08 63.5 191 28.3
SHI14999 Sapria himalayana HOM05D005377 ORTHO05D003034 1.1e-07 61.2 47 63.8


User provided reference genes

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