Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043920 Amaranthus hybridus HOM05D006422 ORTHO05D007992 2.7e-101 372.1 203 100.0
EL10Ac2g03719 Beta vulgaris HOM05D006422 ORTHO05D007992 8.1e-69 264.2 222 65.3
AUR62020627 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.1e-65 253.8 206 65.5
Sc09g0007930 Simmondsia chinensis HOM05D006422 ORTHO05D007992 1.4e-57 226.9 206 59.2
Solyc08g006160.4 Solanum lycopersicum HOM05D006422 ORTHO05D007992 1.9e-57 226.5 204 57.4
Sopen08g002130 Solanum pennellii HOM05D006422 ORTHO05D007992 3.2e-57 225.7 204 57.4
Dinv10868 Davidia involucrata HOM05D006422 ORTHO05D007992 5.4e-57 224.9 204 57.8
Dinv26550 Davidia involucrata HOM05D006422 ORTHO05D007992 5.4e-57 224.9 204 57.8
GSVIVG01035544001 Vitis vinifera HOM05D006422 ORTHO05D007992 2.7e-56 222.6 204 58.3
PGSC0003DMG400009533 Solanum tuberosum HOM05D006422 ORTHO05D007992 3.5e-56 222.2 196 58.7
MSTRG.11814 Avicennia marina HOM05D006422 ORTHO05D007992 4.6e-56 221.9 204 58.8
Actinidia03579 Actinidia chinensis HOM05D006422 ORTHO05D007992 7.8e-56 221.1 188 61.7
CANSAT25G0758 Cannabis sativa HOM05D006422 ORTHO05D007992 7.8e-56 221.1 204 58.3
CAN.G1364.3 Capsicum annuum HOM05D006422 ORTHO05D007992 7.8e-56 221.1 196 59.2
Ciclev10009324m.g Citrus clementina HOM05D006422 ORTHO05D007992 1.7e-55 219.9 191 60.2
Migut.A00443 Erythranthe guttata HOM05D006422 ORTHO05D007992 1.7e-55 219.9 209 57.4
PSO170G4757 Papaver somniferum HOM05D006422 ORTHO05D007992 1.7e-55 219.9 206 58.3
Cfa013253 Carpinus fangiana HOM05D006422 ORTHO05D007992 3.0e-55 219.2 205 57.6
PSO017G3510 Papaver somniferum HOM05D006422 ORTHO05D007992 6.6e-55 218.0 196 59.2
Atru.chr7.2615_Atru.chr7.2616 Acer truncatum HOM05D006422 ORTHO05D007992 1.9e-54 216.5 191 59.7
AUR62038756 Chenopodium quinoa HOM05D006422 ORTHO05D007992 1.9e-54 216.5 164 67.1
Sabra06G0214100 Salix brachista HOM05D006422 ORTHO05D007992 1.9e-54 216.5 205 57.1
Cc04_g09430 Coffea canephora HOM05D006422 ORTHO05D007992 2.5e-54 216.1 238 52.5
Aqoxy5G03915 Aquilegia oxysepala HOM05D006422 ORTHO05D007992 3.3e-54 215.7 186 60.2
Hma1.2p1_0534F.1_g173720 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 5.6e-54 214.9 187 58.3
TAR383G0184 Trochodendron aralioides HOM05D006422 ORTHO05D007992 5.6e-54 214.9 192 58.3
MBI13_g31531_MAGBIO Magnolia biondii HOM05D006422 ORTHO05D007992 9.6e-54 214.2 177 61.6
CiPaw.07G214400 Carya illinoinensis HOM05D006422 ORTHO05D007992 3.6e-53 212.2 189 58.2
Nn1g01726 Nelumbo nucifera HOM05D006422 ORTHO05D007992 4.8e-53 211.8 195 57.9
RcHm_v2.0_Chr6g0312201 Rosa chinensis HOM05D006422 ORTHO05D007992 4.8e-53 211.8 193 57.5
COL.COLO4_18610 Corchorus olitorius HOM05D006422 ORTHO05D007992 6.2e-53 211.5 193 57.0
Lj5g0012981 Lotus japonicus HOM05D006422 ORTHO05D007992 8.1e-53 211.1 203 57.1
Manes.16G136400 Manihot esculenta HOM05D006422 ORTHO05D007992 1.1e-52 210.7 190 58.9
QL12p024696 Quercus lobata HOM05D006422 ORTHO05D007992 1.1e-52 210.7 206 57.3
Thecc.09G005200 Theobroma cacao HOM05D006422 ORTHO05D007992 1.1e-52 210.7 192 59.9
Peaxi162Scf00045g01530 Petunia axillaris HOM05D006422 ORTHO05D007992 2.4e-52 209.5 192 57.8
Potri.006G276400 Populus trichocarpa HOM05D006422 ORTHO05D007992 3.1e-52 209.1 205 55.6
MD15G1109900 Malus domestica HOM05D006422 ORTHO05D007992 5.3e-52 208.4 193 56.5
Nitab4.5_0000025g0080 Nicotiana tabacum HOM05D006422 ORTHO05D007992 5.3e-52 208.4 219 52.5
ATR0626G032 Amborella trichopoda HOM05D006422 ORTHO05D007992 1.2e-51 207.2 205 54.1
Gohir.D06G108900 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.5e-51 206.8 204 53.9
ClCG08G012780 Citrullus lanatus HOM05D006422 ORTHO05D007992 2.0e-51 206.5 182 62.6
DCAR_003025 Daucus carota HOM05D006422 ORTHO05D007992 2.0e-51 206.5 170 60.6
Gorai.010G123700 Gossypium raimondii HOM05D006422 ORTHO05D007992 2.0e-51 206.5 204 53.9
VMungo0647G2190 Vigna mungo HOM05D006422 ORTHO05D007992 2.0e-51 206.5 232 50.0
FAN24G2382 Fragaria x ananassa HOM05D006422 ORTHO05D007992 2.6e-51 206.1 202 55.0
HPP92_004705 Vanilla planifolia HOM05D006422 ORTHO05D007992 2.6e-51 206.1 205 54.1
Lalb_Chr14g0362181 Lupinus albus HOM05D006422 ORTHO05D007992 3.4e-51 205.7 189 58.2
arahy.Tifrunner.gnm1.ann1.43EIBT Arachis hypogaea HOM05D006422 ORTHO05D007992 4.4e-51 205.3 240 50.4
Ca_12880_v3 Cicer arietinum L. HOM05D006422 ORTHO05D007992 4.4e-51 205.3 188 58.0
FvH4_2g30680 Fragaria vesca HOM05D006422 ORTHO05D007992 4.4e-51 205.3 204 54.4
Duzib168G1765 Durio zibethinus HOM05D006422 ORTHO05D007992 5.8e-51 204.9 190 56.3
CDE04G2326 Ceratophyllum demersum HOM05D006422 ORTHO05D007992 7.6e-51 204.5 187 57.2
Phvul.001G058000 Phaseolus vulgaris HOM05D006422 ORTHO05D007992 7.6e-51 204.5 232 50.0
Rhsim07G0170200 Rhododendron simsii HOM05D006422 ORTHO05D007992 7.6e-51 204.5 209 52.2
SGA_v2.0_scaffold27G11666 Striga asiatica HOM05D006422 ORTHO05D007992 7.6e-51 204.5 194 55.7
Prupe.1G462100 Prunus persica HOM05D006422 ORTHO05D007992 9.9e-51 204.1 201 56.2
THA.LOC104811048 Tarenaya hassleriana HOM05D006422 ORTHO05D007992 9.9e-51 204.1 193 56.5
Eucgr.C02103 Eucalyptus grandis HOM05D006422 ORTHO05D007992 1.3e-50 203.8 201 55.7
A10p19790 Brassica napus HOM05D006422 ORTHO05D007992 2.9e-50 202.6 193 54.9
BraA10t44055Z Brassica rapa HOM05D006422 ORTHO05D007992 2.9e-50 202.6 193 54.9
HanXRQChr13g0412481 Helianthus annuus HOM05D006422 ORTHO05D007992 2.9e-50 202.6 207 52.2
FAN27G3442 Fragaria x ananassa HOM05D006422 ORTHO05D007992 3.8e-50 202.2 203 54.7
BcaB08g36552 Brassica carinata HOM05D006422 ORTHO05D007992 4.9e-50 201.8 193 55.4
BcaC04g19400 Brassica carinata HOM05D006422 ORTHO05D007992 4.9e-50 201.8 193 55.4
C09p56110 Brassica napus HOM05D006422 ORTHO05D007992 4.9e-50 201.8 193 55.4
BolC9t58478H Brassica oleracea HOM05D006422 ORTHO05D007992 4.9e-50 201.8 193 55.4
PGR042G1463 Punica granatum HOM05D006422 ORTHO05D007992 6.4e-50 201.4 190 56.8
TPR.G11997 Trifolium pratense HOM05D006422 ORTHO05D007992 6.4e-50 201.4 203 52.2
arahy.Tifrunner.gnm1.ann1.D9GJPD Arachis hypogaea HOM05D006422 ORTHO05D007992 8.4e-50 201.1 240 49.6
Thhalv10014537m.g Eutrema salsugineum HOM05D006422 ORTHO05D007992 8.4e-50 201.1 193 55.4
Gohir.A06G106700 Gossypium hirsutum HOM05D006422 ORTHO05D007992 1.4e-49 200.3 208 52.9
Medtr1g009980 Medicago truncatula HOM05D006422 ORTHO05D007992 1.4e-49 200.3 188 56.4
Psat6g032000 Pisum sativum HOM05D006422 ORTHO05D007992 1.9e-49 199.9 197 52.3
Sp6g24440 Schrenkiella parvula HOM05D006422 ORTHO05D007992 2.4e-49 199.5 193 54.4
Lsat_1_v5_gn_5_61061 Lactuca sativa HOM05D006422 ORTHO05D007992 4.2e-49 198.7 197 53.3
A03p09710 Brassica napus HOM05D006422 ORTHO05D007992 7.1e-49 198.0 189 54.5
BraA03t10287Z Brassica rapa HOM05D006422 ORTHO05D007992 7.1e-49 198.0 189 54.5
BcaB01g04822 Brassica carinata HOM05D006422 ORTHO05D007992 1.2e-48 197.2 192 54.7
BcaB01g04848 Brassica carinata HOM05D006422 ORTHO05D007992 1.2e-48 197.2 209 52.2
C03p11290 Brassica napus HOM05D006422 ORTHO05D007992 1.2e-48 197.2 192 54.7
BolC3t13599H Brassica oleracea HOM05D006422 ORTHO05D007992 1.6e-48 196.8 192 54.2
unitig_748.g7381 Utricularia gibba HOM05D006422 ORTHO05D007992 2.1e-48 196.4 184 55.4
Zm00001eb071430 Zea mays HOM05D006422 ORTHO05D007992 6.0e-48 194.9 203 53.2
vmacro05107 Vaccinium macrocarpon HOM05D006422 ORTHO05D007992 7.9e-48 194.5 166 58.4
Aa31LG9G9500 Aethionema arabicum HOM05D006422 ORTHO05D007992 1.3e-47 193.7 196 52.0
CARHR192910 Cardamine hirsuta HOM05D006422 ORTHO05D007992 1.3e-47 193.7 193 52.3
Nitab4.5_0003259g0070 Nicotiana tabacum HOM05D006422 ORTHO05D007992 1.3e-47 193.7 209 51.7
Haze_21696 Corylus avellana HOM05D006422 ORTHO05D007992 2.3e-47 193.0 158 60.8
Os04g0607000 Oryza sativa ssp. japonica HOM05D006422 ORTHO05D007992 2.3e-47 193.0 190 54.2
TWI34G0909 Tripterygium wilfordii HOM05D006422 ORTHO05D007992 8.7e-47 191.0 190 53.2
AL6G31470 Arabidopsis lyrata HOM05D006422 ORTHO05D007992 1.9e-46 189.9 193 51.8
AT5G19940 Arabidopsis thaliana HOM05D006422 ORTHO05D007992 1.9e-46 189.9 193 51.8
Carub.0006s1831 Capsella rubella HOM05D006422 ORTHO05D007992 1.9e-46 189.9 193 51.8
Oeu018400.2 Olea europaea HOM05D006422 ORTHO05D007992 9.6e-46 187.6 154 59.7
Glyma.17G201600 Glycine max HOM05D006422 ORTHO05D007992 1.8e-44 183.3 190 53.2
CiPaw.08G017800 Carya illinoinensis HOM05D006422 ORTHO05D007992 7.6e-43 177.9 168 59.5
ECA240G0283 Erigeron canadensis HOM05D000069 ORTHO05D000060 3.5e-40 169.1 181 47.5
FAN20G1184 Fragaria x ananassa HOM05D006422 ORTHO05D007992 4.6e-40 168.7 181 51.4
SEGI_33970 Sequoiadendron giganteum HOM05D006422 ORTHO05D007992 1.5e-38 163.7 185 44.3
Pp3c13_4790 Physcomitrium patens HOM05D006422 ORTHO05D007992 1.2e-32 144.1 191 38.2
Mapoly0021s0119 Marchantia polymorpha HOM05D006422 ORTHO05D007992 1.6e-32 143.7 196 40.3
AagrBONN_evm.TU.Sc2ySwM_228.4709 Anthoceros agrestis HOM05D006422 ORTHO05D007992 3.5e-32 142.5 164 40.9
MELO3C011201.2 Cucumis melo HOM05D006422 ORTHO05D007992 1.8e-31 140.2 129 58.1
Hma1.2p1_0534F.1_g173730 Hydrangea macrophylla HOM05D006422 ORTHO05D007992 6.7e-31 138.3 127 56.7
SMO364G0843 Selaginella moellendorffii HOM05D006422 ORTHO05D007992 8.7e-31 137.9 165 42.4
Lj7A749G60 Lonicera japonica HOM05D006422 ORTHO05D007992 1.6e-29 133.7 121 55.4
CSS0034711 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 3.7e-29 132.5 151 50.3
FAN15G3645 Fragaria x ananassa HOM05D006422 ORTHO05D007992 3.7e-29 132.5 142 52.8
CSS0017479 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 4.5e-27 125.6 126 55.6
Gorai.002G101300 Gossypium raimondii HOM05D006422 ORTHO05D007992 9.0e-20 101.3 110 50.9
Oeu014126.1 Olea europaea HOM05D006422 ORTHO05D007992 4.5e-19 99.0 61 75.4
Hund19396 Selenicereus undatus HOM05D006422 ORTHO05D007992 1.1e-17 94.4 68 72.1
CSS0035518 Camellia sinensis var. sinensis HOM05D006422 ORTHO05D007992 4.6e-16 89.0 154 39.0
CBR_g3792 Chara braunii HOM05D006422 ORTHO05D007992 1.1e-14 84.3 173 30.1
arahy.Tifrunner.gnm1.ann1.19GFYA Arachis hypogaea HOM05D003483 ORTHO05D004101 1.9e-09 67.0 136 26.5
Potri.003G020700 Populus trichocarpa HOM05D003483 ORTHO05D004101 1.9e-09 67.0 162 27.2
Nitab4.5_0002245g0170 Nicotiana tabacum HOM05D003483 ORTHO05D004101 4.2e-09 65.9 162 25.9
SalBow6G7247 Salvia bowleyana HOM05D003483 ORTHO05D004101 5.5e-09 65.5 162 25.3
Cre12.g502250 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 9.4e-09 64.7 194 27.8
Nitab4.5_0003819g0040 Nicotiana tabacum HOM05D003483 ORTHO05D004101 9.4e-09 64.7 162 24.7
SalBow6G5560 Salvia bowleyana HOM05D003483 ORTHO05D004101 9.4e-09 64.7 162 24.7
Peaxi162Scf00011g00242 Petunia axillaris HOM05D003483 ORTHO05D004101 1.6e-08 63.9 165 25.5
AUR62017510 Chenopodium quinoa HOM05D003483 ORTHO05D004101 2.1e-08 63.5 132 26.5
Cc02_g22350 Coffea canephora HOM05D003483 ORTHO05D004101 2.1e-08 63.5 162 24.7
SMO347G0483 Selaginella moellendorffii HOM05D003483 ORTHO05D004101 2.1e-08 63.5 155 26.5
Lj6g0022843 Lotus japonicus HOM05D003483 ORTHO05D004101 2.7e-08 63.2 162 24.1
MCO15G093 Micromonas commoda HOM05D006422 ORTHO05D007992 2.7e-08 63.2 57 50.9
VMungo0540G1714 Vigna mungo HOM05D003483 ORTHO05D004101 3.6e-08 62.8 162 25.9
COL.COLO4_17881 Corchorus olitorius HOM05D003483 ORTHO05D004101 4.7e-08 62.4 162 24.7
Lsat_1_v5_gn_9_118240 Lactuca sativa HOM05D003483 ORTHO05D004101 4.7e-08 62.4 161 25.5
MBI03_g28296_MAGBIO Magnolia biondii HOM05D003483 ORTHO05D004101 7.9e-08 61.6 159 24.5
CDE02G1133 Ceratophyllum demersum HOM05D003483 ORTHO05D004101 1.0e-07 61.2 160 23.8
PRCOL_00004658 Prasinoderma coloniale HOM05D006422 ORTHO05D007992 1.0e-07 61.2 51 54.9
MSTRG.5236 Avicennia marina HOM05D003483 ORTHO05D004101 1.4e-07 60.8 187 23.0
Cpa.g.sc2.4 Carica papaya HOM05D003483 ORTHO05D004101 1.4e-07 60.8 162 24.1
PGR142G0005 Punica granatum HOM05D003483 ORTHO05D004101 1.4e-07 60.8 160 25.0
Thecc.02G039900 Theobroma cacao HOM05D003483 ORTHO05D004101 1.8e-07 60.5 162 24.1
Hma1.2p1_0217F.1_g091970 Hydrangea macrophylla HOM05D003483 ORTHO05D004101 2.3e-07 60.1 176 25.6
PSO017G4111 Papaver somniferum HOM05D003483 ORTHO05D004101 2.3e-07 60.1 154 22.7
GSVIVG01022998001 Vitis vinifera HOM05D003483 ORTHO05D004101 2.3e-07 60.1 175 24.6
CSS0026849 Camellia sinensis var. sinensis HOM05D003483 ORTHO05D004101 3.0e-07 59.7 160 25.0
HanXRQChr03g0066831 Helianthus annuus HOM05D003483 ORTHO05D004101 3.0e-07 59.7 164 24.4
Pp3c23_15450 Physcomitrium patens HOM05D003483 ORTHO05D004101 3.0e-07 59.7 157 26.1
ATR0684G013 Amborella trichopoda HOM05D003483 ORTHO05D004101 3.9e-07 59.3 191 22.5
ECA240G0807 Erigeron canadensis HOM05D003483 ORTHO05D004101 3.9e-07 59.3 159 25.2
MD15G1421400 Malus domestica HOM05D003483 ORTHO05D004101 3.9e-07 59.3 172 23.3
VMungo0540G0086 Vigna mungo HOM05D003483 ORTHO05D004101 3.9e-07 59.3 165 23.0
Zm00001eb054390 Zea mays HOM05D003483 ORTHO05D004101 3.9e-07 59.3 159 25.8
CAN.G1577.5 Capsicum annuum HOM05D003483 ORTHO05D004101 5.1e-07 58.9 180 26.7
Cre07.g325736 Chlamydomonas reinhardtii HOM05D006422 ORTHO05D007992 5.1e-07 58.9 99 28.3
Os03g0704100 Oryza sativa ssp. japonica HOM05D003483 ORTHO05D004101 5.1e-07 58.9 167 24.0
Glyma.08G185800 Glycine max HOM05D003483 ORTHO05D004101 6.7e-07 58.5 155 23.2
Glyma.15G047700 Glycine max HOM05D003483 ORTHO05D004101 6.7e-07 58.5 162 24.7
AagrBONN_evm.TU.Sc2ySwM_344.1832 Anthoceros agrestis HOM05D003483 ORTHO05D004101 1.1e-06 57.8 156 25.0
arahy.Tifrunner.gnm1.ann1.G5V2PN Arachis hypogaea HOM05D003483 ORTHO05D004101 1.1e-06 57.8 162 24.1
Manes.07G014600 Manihot esculenta HOM05D003483 ORTHO05D004101 1.1e-06 57.8 158 23.4
Phvul.006G214200 Phaseolus vulgaris HOM05D003483 ORTHO05D004101 1.1e-06 57.8 155 23.9
PGR142G1721 Punica granatum HOM05D003483 ORTHO05D004101 1.5e-06 57.4 158 22.8
GSVIVG01022995001 Vitis vinifera HOM05D003483 ORTHO05D004101 1.5e-06 57.4 158 22.8
Glyma.15G047000 Glycine max HOM05D003483 ORTHO05D004101 2.6e-06 56.6 155 21.9
MELO3C010097.2 Cucumis melo HOM05D003483 ORTHO05D004101 3.3e-06 56.2 161 23.6
Medtr2g007300 Medicago truncatula HOM05D003483 ORTHO05D004101 3.3e-06 56.2 176 23.3
PGSC0003DMG400023753 Solanum tuberosum HOM05D003483 ORTHO05D004101 3.3e-06 56.2 186 25.3
Ca_00080_v3 Cicer arietinum L. HOM05D003483 ORTHO05D004101 4.4e-06 55.8 160 21.9
arahy.Tifrunner.gnm1.ann1.021TT5 Arachis hypogaea HOM05D003483 ORTHO05D004101 5.7e-06 55.5 159 23.9
CiPaw.05G043400 Carya illinoinensis HOM05D003483 ORTHO05D004101 5.7e-06 55.5 157 28.0
Migut.N01039 Erythranthe guttata HOM05D003483 ORTHO05D004101 5.7e-06 55.5 154 22.1
Sed0016447 Sechium edule HOM05D003483 ORTHO05D004101 5.7e-06 55.5 161 22.4
Atru.chr6.836 Acer truncatum HOM05D003483 ORTHO05D004101 7.4e-06 55.1 158 21.5
Lj9A307T41 Lonicera japonica HOM05D003483 ORTHO05D004101 7.4e-06 55.1 168 22.6
TAR381G1595 Trochodendron aralioides HOM05D003483 ORTHO05D004101 7.4e-06 55.1 158 24.1
DCAR_021518 Daucus carota HOM05D003483 ORTHO05D004101 9.7e-06 54.7 155 23.2
Hund01591 Selenicereus undatus HOM05D003483 ORTHO05D004101 9.7e-06 54.7 137 27.0


User provided reference genes

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