Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043870 Amaranthus hybridus HOM05D001798 ORTHO05D005040 6.2e-73 277.3 136 100.0
AUR62020597 Chenopodium quinoa HOM05D001798 ORTHO05D005040 1.5e-31 139.8 145 57.9
AUR62009071 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.0e-31 139.4 147 55.8
EL10Ac2g03758 Beta vulgaris HOM05D001798 ORTHO05D005040 2.9e-30 135.6 148 57.4
CiPaw.08G019800 Carya illinoinensis HOM05D001798 ORTHO05D005040 1.1e-16 90.5 113 49.6
Prupe.1G460000 Prunus persica HOM05D001798 ORTHO05D005040 1.5e-15 86.7 116 45.7
QL02p097578 Quercus lobata HOM05D001798 ORTHO05D005040 2.0e-15 86.3 121 41.3
MD13G1257600 Malus domestica HOM05D001798 ORTHO05D005040 3.4e-15 85.5 120 43.3
Manes.16G135500 Manihot esculenta HOM05D001798 ORTHO05D005040 3.4e-15 85.5 117 44.4
Potri.006G273500 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.7e-15 84.3 126 44.4
Potri.006G273566 Populus trichocarpa HOM05D001798 ORTHO05D005040 7.7e-15 84.3 126 44.4
Haze_21741 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-14 84.0 127 44.1
Haze_21742 Corylus avellana HOM05D001798 ORTHO05D005040 1.0e-14 84.0 127 44.1
Sabra06G0212200 Salix brachista HOM05D001798 ORTHO05D005040 1.0e-14 84.0 124 46.8
Manes.03G004000 Manihot esculenta HOM05D001798 ORTHO05D005040 1.3e-14 83.6 118 44.1
CiPaw.07G191500 Carya illinoinensis HOM05D001798 ORTHO05D005040 2.2e-14 82.8 120 38.3
Sabra18G0014500 Salix brachista HOM05D000280 ORTHO05D006100 2.2e-14 82.8 121 39.7
QL12p025154 Quercus lobata HOM05D001798 ORTHO05D005040 2.9e-14 82.4 123 44.7
Solyc11g008600.1 Solanum lycopersicum HOM05D001798 ORTHO05D005040 2.9e-14 82.4 129 41.1
Sabra06G0211900 Salix brachista HOM05D001798 ORTHO05D005040 3.8e-14 82.0 139 44.6
Ciclev10010207m.g Citrus clementina HOM05D001798 ORTHO05D005040 6.5e-14 81.3 109 48.6
FAN20G2332 Fragaria x ananassa HOM05D001798 ORTHO05D005040 6.5e-14 81.3 120 45.0
RcHm_v2.0_Chr1g0336341 Rosa chinensis HOM05D001798 ORTHO05D005040 8.5e-14 80.9 118 44.1
FvH4_2g36750 Fragaria vesca HOM05D001798 ORTHO05D005040 1.1e-13 80.5 117 45.3
FAN27G0855 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.1e-13 80.5 117 45.3
COL.COLO4_19032 Corchorus olitorius HOM05D001798 ORTHO05D005040 1.4e-13 80.1 124 42.7
RcHm_v2.0_Chr6g0305001 Rosa chinensis HOM05D001798 ORTHO05D005040 1.9e-13 79.7 121 43.8
Sopen11g004390 Solanum pennellii HOM05D001798 ORTHO05D005040 1.9e-13 79.7 128 39.1
Ciclev10010310m.g Citrus clementina HOM05D001798 ORTHO05D005040 2.5e-13 79.3 109 47.7
Haze_19626 Corylus avellana HOM05D001798 ORTHO05D005040 2.5e-13 79.3 122 41.0
Potri.018G006800 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.2e-13 79.0 122 40.2
Thecc.09G171700 Theobroma cacao HOM05D001798 ORTHO05D005040 3.2e-13 79.0 128 38.3
TWI34G1338 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 3.2e-13 79.0 127 44.1
Cfa013271 Carpinus fangiana HOM05D001798 ORTHO05D005040 4.2e-13 78.6 115 40.0
Haze_21745 Corylus avellana HOM05D001798 ORTHO05D005040 5.5e-13 78.2 119 42.9
Sabra18G0080900 Salix brachista HOM05D001798 ORTHO05D005040 5.5e-13 78.2 118 44.9
PGSC0003DMG400016261 Solanum tuberosum HOM05D001798 ORTHO05D005040 5.5e-13 78.2 131 37.4
CAN.G321.14 Capsicum annuum HOM05D001798 ORTHO05D005040 7.2e-13 77.8 138 38.4
Duzib150G1419 Durio zibethinus HOM05D001798 ORTHO05D005040 7.2e-13 77.8 129 41.1
Duzib170G0014 Durio zibethinus HOM05D001798 ORTHO05D005040 7.2e-13 77.8 127 39.4
Eucgr.C02286 Eucalyptus grandis HOM05D001798 ORTHO05D005040 7.2e-13 77.8 118 41.5
MELO3C017469.2 Cucumis melo HOM05D001798 ORTHO05D005040 9.4e-13 77.4 119 40.3
TAR383G0769 Trochodendron aralioides HOM05D001798 ORTHO05D005040 9.4e-13 77.4 127 40.9
CsaV3_1G031530 Cucumis sativus L. HOM05D001798 ORTHO05D005040 1.2e-12 77.0 119 39.5
Prupe.1G087800 Prunus persica HOM05D001798 ORTHO05D005040 1.2e-12 77.0 124 40.3
TWI34G0376 Tripterygium wilfordii HOM05D001798 ORTHO05D005040 1.2e-12 77.0 132 44.7
Dinv41255 Davidia involucrata HOM05D001798 ORTHO05D004054 2.1e-12 76.3 120 38.3
FvH4_4g09360 Fragaria vesca HOM05D001798 ORTHO05D005040 2.1e-12 76.3 131 38.9
MBI16_g35923_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 2.1e-12 76.3 127 37.8
Manes.14G151300 Manihot esculenta HOM05D001798 ORTHO05D005040 2.1e-12 76.3 127 38.6
Duzib168G0008 Durio zibethinus HOM05D001798 ORTHO05D005040 2.7e-12 75.9 126 38.1
Eucgr.C02285 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.7e-12 75.9 120 41.7
Ciclev10009891m.g Citrus clementina HOM05D001798 ORTHO05D005040 3.6e-12 75.5 122 41.0
Gohir.A08G085900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.6e-12 75.5 119 39.5
Sed0020469 Sechium edule HOM05D001798 ORTHO05D005040 3.6e-12 75.5 123 41.5
SGA_v2.0_scaffold12G06063 Striga asiatica HOM05D001798 ORTHO05D005040 3.6e-12 75.5 125 43.2
Migut.J01450 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.7e-12 75.1 126 42.9
C02p14230 Brassica napus HOM05D001798 ORTHO05D005040 6.1e-12 74.7 129 35.7
COL.COLO4_36848 Corchorus olitorius HOM05D001798 ORTHO05D005040 6.1e-12 74.7 118 38.1
MSTRG.26226 Avicennia marina HOM05D001798 ORTHO05D005040 7.9e-12 74.3 123 39.0
BcaC03g14152 Brassica carinata HOM05D001798 ORTHO05D005040 7.9e-12 74.3 129 35.7
BolC2t07547H Brassica oleracea HOM05D001798 ORTHO05D005040 7.9e-12 74.3 129 35.7
ECA240G2061 Erigeron canadensis HOM05D001798 ORTHO05D005040 7.9e-12 74.3 147 31.3
FAN22G0641 Fragaria x ananassa HOM05D001798 ORTHO05D005040 7.9e-12 74.3 131 38.2
MBI16_g35924_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 7.9e-12 74.3 127 37.0
MD08G1128200 Malus domestica HOM05D001798 ORTHO05D005040 7.9e-12 74.3 119 40.3
CSS0005198 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.0e-11 73.9 134 37.3
CSS0011185 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 1.0e-11 73.9 134 37.3
Cfa016621 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.0e-11 73.9 122 40.2
ClCG06G013270 Citrullus lanatus HOM05D001798 ORTHO05D005040 1.0e-11 73.9 119 39.5
MD12G1161200 Malus domestica HOM05D001798 ORTHO05D005040 1.0e-11 73.9 118 38.1
Peaxi162Scf00296g00124 Petunia axillaris HOM05D001798 ORTHO05D005040 1.0e-11 73.9 129 37.2
Haze_21738 Corylus avellana HOM05D001798 ORTHO05D005040 1.4e-11 73.6 118 41.5
QL02p097572 Quercus lobata HOM05D001798 ORTHO05D005040 1.4e-11 73.6 124 37.9
Sp6g19210 Schrenkiella parvula HOM05D001798 ORTHO05D005040 1.4e-11 73.6 118 36.4
MSTRG.19701 Avicennia marina HOM05D001798 ORTHO05D005040 1.8e-11 73.2 116 41.4
Thhalv10015454m.g Eutrema salsugineum HOM05D001798 ORTHO05D005040 1.8e-11 73.2 119 37.0
FvH4_3g45900 Fragaria vesca HOM05D001798 ORTHO05D005040 1.8e-11 73.2 136 36.8
Gorai.004G100700 Gossypium raimondii HOM05D001798 ORTHO05D005040 1.8e-11 73.2 118 39.0
Nn2g12701 Nelumbo nucifera HOM05D001798 ORTHO05D005040 2.3e-11 72.8 127 38.6
SalBow6G3226 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-11 72.8 120 41.7
SalBow6G3242 Salvia bowleyana HOM05D001798 ORTHO05D005040 2.3e-11 72.8 120 41.7
A02p08470 Brassica napus HOM05D001798 ORTHO05D005040 3.0e-11 72.4 128 35.2
BraA02t05918Z Brassica rapa HOM05D001798 ORTHO05D005040 3.0e-11 72.4 128 35.2
CSS0022506 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 3.0e-11 72.4 134 36.6
Potri.018G094100 Populus trichocarpa HOM05D001798 ORTHO05D005040 3.0e-11 72.4 131 39.7
Thecc.09G007300 Theobroma cacao HOM05D001798 ORTHO05D005040 3.0e-11 72.4 79 50.6
Gohir.D06G107900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 3.9e-11 72.0 126 36.5
MD15G1107700 Malus domestica HOM05D001798 ORTHO05D005040 3.9e-11 72.0 126 44.4
CSS0019887 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 5.1e-11 71.6 135 37.8
SalBow1G2776 Salvia bowleyana HOM05D001798 ORTHO05D005040 5.1e-11 71.6 116 38.8
Lj4g0012331 Lotus japonicus HOM05D001798 ORTHO05D005040 6.7e-11 71.2 124 39.5
BcaB05g22348 Brassica carinata HOM05D001798 ORTHO05D005040 8.8e-11 70.9 128 35.9
BcaB08g36104 Brassica carinata HOM05D001798 ORTHO05D005040 8.8e-11 70.9 119 37.0
FAN15G2712 Fragaria x ananassa HOM05D001798 ORTHO05D005040 8.8e-11 70.9 121 42.1
Aa31LG3G13380 Aethionema arabicum HOM05D001798 ORTHO05D005040 1.1e-10 70.5 118 34.7
Duzib187G0913 Durio zibethinus HOM05D001798 ORTHO05D005040 1.1e-10 70.5 129 38.0
Gohir.D08G094900 Gossypium hirsutum HOM05D001798 ORTHO05D005040 1.1e-10 70.5 118 38.1
Hma1.2p1_2478F.1_g322950 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.1e-10 70.5 121 37.2
Atru.chr7.661 Acer truncatum HOM05D001798 ORTHO05D005040 1.5e-10 70.1 123 37.4
Aqoxy7G03082 Aquilegia oxysepala HOM05D001798 ORTHO05D005040 1.5e-10 70.1 135 36.3
Cpa.g.sc95.60 Carica papaya HOM05D001798 ORTHO05D005040 1.5e-10 70.1 120 40.0
Cfa013270 Carpinus fangiana HOM05D001798 ORTHO05D005040 1.5e-10 70.1 118 41.5
Glyma.13G095700 Glycine max HOM05D001798 ORTHO05D005040 1.5e-10 70.1 122 39.3
Hma1.2p1_1646F.1_g295510 Hydrangea macrophylla HOM05D001798 ORTHO05D005040 1.5e-10 70.1 121 38.0
VMungo1215G0796 Vigna mungo HOM05D001798 ORTHO05D005040 1.5e-10 70.1 125 38.4
Eucgr.C00167 Eucalyptus grandis HOM05D001798 ORTHO05D005040 2.0e-10 69.7 120 34.2
Lsat_1_v5_gn_8_67120 Lactuca sativa HOM05D001798 ORTHO05D005040 2.0e-10 69.7 141 35.5
Glyma.17G064300 Glycine max HOM05D001798 ORTHO05D005040 2.6e-10 69.3 123 39.0
AT5G57510 Arabidopsis thaliana HOM05D001798 ORTHO05D005040 3.3e-10 68.9 119 37.8
Gohir.A06G105500 Gossypium hirsutum HOM05D001798 ORTHO05D005040 4.4e-10 68.6 126 34.9
MBI16_g35927_MAGBIO Magnolia biondii HOM05D000772 ORTHO05D005040 4.4e-10 68.6 119 39.5
CARHR271290 Cardamine hirsuta HOM05D001798 ORTHO05D005040 5.7e-10 68.2 121 33.9
Gorai.010G122600 Gossypium raimondii HOM05D001798 ORTHO05D005040 5.7e-10 68.2 127 36.2
THA.LOC104817796 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 7.4e-10 67.8 123 37.4
Atru.chr7.2645 Acer truncatum HOM05D001798 ORTHO05D005040 1.3e-09 67.0 130 38.5
CANSAT11G0905 Cannabis sativa HOM05D001798 ORTHO05D005040 1.3e-09 67.0 160 32.5
Medtr4g128470 Medicago truncatula HOM05D001798 ORTHO05D005040 1.3e-09 67.0 125 36.8
SGA_v2.0_scaffold301G47805 Striga asiatica HOM05D000485 ORTHO05D005040 1.7e-09 66.6 137 35.8
SGA_v2.0_scaffold69G23263 Striga asiatica HOM05D001798 ORTHO05D005040 1.7e-09 66.6 123 40.7
HanXRQChr09g0254491 Helianthus annuus HOM05D001798 ORTHO05D005040 2.2e-09 66.2 149 31.5
Psat4g011600 Pisum sativum HOM05D001798 ORTHO05D005040 2.2e-09 66.2 120 36.7
AUR62022665 Chenopodium quinoa HOM05D001798 ORTHO05D005040 2.8e-09 65.9 135 35.6
CSS0007301 Camellia sinensis var. sinensis HOM05D001798 ORTHO05D005040 4.8e-09 65.1 132 36.4
Cpa.g.sc23.17 Carica papaya HOM05D001798 ORTHO05D005040 4.8e-09 65.1 134 35.1
Migut.K00248 Erythranthe guttata HOM05D001798 ORTHO05D005040 4.8e-09 65.1 130 40.0
Lalb_Chr12g0199341 Lupinus albus HOM05D001798 ORTHO05D005040 4.8e-09 65.1 125 41.6
Phvul.003G146800 Phaseolus vulgaris HOM05D001798 ORTHO05D005040 4.8e-09 65.1 121 40.5
PSO349G0296 Papaver somniferum HOM05D001798 ORTHO05D005040 1.4e-08 63.5 138 34.8
PGR142G4397 Punica granatum HOM05D001798 ORTHO05D005040 1.4e-08 63.5 136 34.6
RcHm_v2.0_Chr4g0402701 Rosa chinensis HOM05D001798 ORTHO05D005040 1.4e-08 63.5 128 32.8
FAN21G0239 Fragaria x ananassa HOM05D001798 ORTHO05D005040 1.8e-08 63.2 101 41.6
THA.LOC104811795 Tarenaya hassleriana HOM05D001798 ORTHO05D005040 1.8e-08 63.2 134 34.3
AL8G33450 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.1e-08 62.4 121 35.5
AL8G33510 Arabidopsis lyrata HOM05D001798 ORTHO05D005040 3.1e-08 62.4 121 35.5
BcaC04g19961 Brassica carinata HOM05D001798 ORTHO05D005040 3.1e-08 62.4 71 45.1
BolC9t57787H Brassica oleracea HOM05D001798 ORTHO05D005040 3.1e-08 62.4 71 45.1
FAN11G1762 Fragaria x ananassa HOM05D001798 ORTHO05D005040 4.1e-08 62.0 101 40.6
TPR.G5377 Trifolium pratense HOM05D001798 ORTHO05D005040 4.1e-08 62.0 121 38.8
Nn2g12703 Nelumbo nucifera HOM05D001798 ORTHO05D005040 7.0e-08 61.2 115 33.0
Carub.0008s1801 Capsella rubella HOM05D001798 ORTHO05D005040 1.2e-07 60.5 119 35.3
RcHm_v2.0_Chr4g0402691 Rosa chinensis HOM05D001798 ORTHO05D005040 1.2e-07 60.5 128 32.0
Haze_21740 Corylus avellana HOM05D001798 ORTHO05D005040 2.0e-07 59.7 105 38.1
Sc01g0002270 Simmondsia chinensis HOM05D001798 ORTHO05D005040 2.0e-07 59.7 138 35.5
Sed0003670 Sechium edule HOM05D001798 ORTHO05D022392 2.6e-07 59.3 121 36.4
Ca_21215_v3 Cicer arietinum L. HOM05D001798 ORTHO05D005040 3.4e-07 58.9 115 37.4
MBI16_g35928_MAGBIO Magnolia biondii HOM05D001798 ORTHO05D005040 3.4e-07 58.9 89 38.2
Nitab4.5_0004131g0060 Nicotiana tabacum HOM05D001798 ORTHO05D005040 3.4e-07 58.9 120 36.7
Rhsim01G0006100 Rhododendron simsii HOM05D001798 ORTHO05D005040 3.4e-07 58.9 80 42.5
CiPaw.07G212400 Carya illinoinensis HOM05D001798 ORTHO05D005040 5.9e-07 58.2 110 39.1
HPP92_010486 Vanilla planifolia HOM05D001798 ORTHO05D005040 5.9e-07 58.2 32 81.2
HPP92_017412 Vanilla planifolia HOM05D001798 ORTHO05D005040 5.9e-07 58.2 32 81.2
Ciclev10010429m.g Citrus clementina HOM05D001798 ORTHO05D005040 1.3e-06 57.0 101 38.6
Ah.05g179040 Amaranthus hybridus HOM05D001798 ORTHO05D005040 2.2e-06 56.2 165 29.7
ClCG10G000980 Citrullus lanatus HOM05D001798 ORTHO05D022392 2.9e-06 55.8 121 35.5
CiPaw.08G037100 Carya illinoinensis HOM05D001798 ORTHO05D005040 3.8e-06 55.5 127 31.5


User provided reference genes

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