Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043760 Amaranthus hybridus HOM05D005642 ORTHO05D006672 9.1e-252 873.2 484 100.0
EL10Ac2g03740 Beta vulgaris HOM05D005642 ORTHO05D006672 1.9e-156 556.6 507 67.3
AUR62020612 Chenopodium quinoa HOM05D005642 ORTHO05D006672 4.9e-149 531.9 500 67.2
AUR62009051 Chenopodium quinoa HOM05D005642 ORTHO05D006672 2.9e-117 426.4 533 55.0
Hund03285 Selenicereus undatus HOM05D005642 ORTHO05D006672 5.0e-109 399.1 493 54.2
Hund19402 Selenicereus undatus HOM05D005642 ORTHO05D006672 2.2e-96 357.1 495 50.5
Ciclev10007752m.g Citrus clementina HOM05D005642 ORTHO05D006672 1.4e-50 204.9 362 45.0
Thecc.09G006400 Theobroma cacao HOM05D005642 ORTHO05D006672 7.4e-44 182.6 409 41.8
Sc23g0006020 Simmondsia chinensis HOM05D005642 ORTHO05D006672 9.6e-44 182.2 412 38.3
MD15G1108600 Malus domestica HOM05D005642 ORTHO05D006672 1.8e-42 177.9 337 47.8
Hma1.2p1_0379F.1_g139820 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 1.2e-41 175.3 574 32.4
Dinv03494 Davidia involucrata HOM05D005642 ORTHO05D006672 3.4e-41 173.7 352 41.5
FvH4_2g36900 Fragaria vesca HOM05D005642 ORTHO05D006672 4.9e-40 169.9 552 35.5
CiPaw.07G213400 Carya illinoinensis HOM05D005642 ORTHO05D006672 3.2e-39 167.2 479 36.5
Prupe.1G460900 Prunus persica HOM05D005642 ORTHO05D006672 4.2e-39 166.8 351 43.0
CSS0029793 Camellia sinensis var. sinensis HOM05D005642 ORTHO05D006672 9.3e-39 165.6 598 34.6
THA.LOC104803598 Tarenaya hassleriana HOM05D005642 ORTHO05D006672 1.6e-38 164.9 387 37.2
FAN20G1085 Fragaria x ananassa HOM05D005642 ORTHO05D006672 4.6e-38 163.3 307 42.7
FAN27G2209 Fragaria x ananassa HOM05D005642 ORTHO05D006672 6.0e-38 162.9 568 34.7
GSVIVG01035528001 Vitis vinifera HOM05D005642 ORTHO05D006672 7.9e-38 162.5 374 36.6
QL12p025051 Quercus lobata HOM05D005642 ORTHO05D006672 2.3e-37 161.0 338 42.0
Lsat_1_v5_gn_3_25461 Lactuca sativa HOM05D005642 ORTHO05D006672 3.9e-37 160.2 286 42.0
Duzib168G1720 Durio zibethinus HOM05D005642 ORTHO05D006672 1.9e-36 157.9 431 34.3
Lj1g0005947 Lotus japonicus HOM05D005642 ORTHO05D006672 1.9e-36 157.9 360 40.3
Manes.03G003300 Manihot esculenta HOM05D005642 ORTHO05D006672 3.3e-36 157.1 390 40.0
RcHm_v2.0_Chr6g0304881 Rosa chinensis HOM05D005642 ORTHO05D006672 3.3e-36 157.1 573 34.6
Actinidia06420 Actinidia chinensis HOM05D005642 ORTHO05D006672 1.3e-35 155.2 378 35.7
ECA246G0678 Erigeron canadensis HOM05D005642 ORTHO05D006672 1.3e-35 155.2 396 34.3
Gorai.001G001600 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.8e-35 154.1 403 37.0
arahy.Tifrunner.gnm1.ann1.KDL0BF Arachis hypogaea HOM05D005642 ORTHO05D006672 8.2e-35 152.5 326 38.7
arahy.Tifrunner.gnm1.ann1.4FD105 Arachis hypogaea HOM05D005642 ORTHO05D006672 1.1e-34 152.1 326 35.9
Medtr3g108780 Medicago truncatula HOM05D005642 ORTHO05D006672 1.1e-34 152.1 364 34.3
VMungo1309G0073 Vigna mungo HOM05D005642 ORTHO05D006672 1.4e-34 151.8 414 37.4
FAN15G2732 Fragaria x ananassa HOM05D005642 ORTHO05D006672 1.8e-34 151.4 565 33.6
ClCG05G017540 Citrullus lanatus HOM05D005642 ORTHO05D006672 2.4e-34 151.0 332 38.6
Gohir.D07G001900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 2.4e-34 151.0 400 34.5
Sed0007069 Sechium edule HOM05D005642 ORTHO05D006672 4.0e-34 150.2 312 43.6
TAR383G0661 Trochodendron aralioides HOM05D005642 ORTHO05D006672 4.0e-34 150.2 407 32.2
TWI32G0776 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 5.3e-34 149.8 359 36.8
BraA08t33825Z Brassica rapa HOM05D005642 ORTHO05D006672 6.9e-34 149.4 408 32.1
Cc11_g04340 Coffea canephora HOM05D005642 ORTHO05D006672 6.9e-34 149.4 332 41.6
Ca_15671_v3 Cicer arietinum L. HOM05D005642 ORTHO05D006672 9.0e-34 149.1 371 35.0
HanXRQChr17g0538601 Helianthus annuus HOM05D005642 ORTHO05D006672 1.2e-33 148.7 498 32.9
Sp7g29290 Schrenkiella parvula HOM05D005642 ORTHO05D006672 1.2e-33 148.7 380 33.2
Gohir.A07G001500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.5e-33 148.3 396 34.1
TWI63G0215 Tripterygium wilfordii HOM05D005642 ORTHO05D006672 3.4e-33 147.1 564 32.1
BcaC01g01089 Brassica carinata HOM05D005642 ORTHO05D006672 4.5e-33 146.7 358 34.6
C03p87980 Brassica napus HOM05D005642 ORTHO05D006672 4.5e-33 146.7 358 34.6
Psat5g024120 Pisum sativum HOM05D005642 ORTHO05D006672 4.5e-33 146.7 377 33.7
Hma1.2p1_0379F.1_g139825 Hydrangea macrophylla HOM05D005642 ORTHO05D006672 7.6e-33 146.0 436 32.1
CAN.G673.14 Capsicum annuum HOM05D005642 ORTHO05D006672 1.3e-32 145.2 351 34.5
DCAR_004570 Daucus carota HOM05D005642 ORTHO05D006672 4.9e-32 143.3 551 29.4
Lalb_Chr23g0269061 Lupinus albus HOM05D005642 ORTHO05D006672 4.9e-32 143.3 324 38.3
Thhalv10024763m.g Eutrema salsugineum HOM05D005642 ORTHO05D006672 6.5e-32 142.9 371 32.9
MSTRG.25774 Avicennia marina HOM05D005642 ORTHO05D006672 8.4e-32 142.5 477 32.3
A08p18620 Brassica napus HOM05D005642 ORTHO05D006672 8.4e-32 142.5 552 29.7
Haze_21725 Corylus avellana HOM05D005642 ORTHO05D006672 1.9e-31 141.4 452 34.3
CsaV3_3G047060 Cucumis sativus L. HOM05D005642 ORTHO05D006672 1.9e-31 141.4 560 31.2
Lalb_Chr11g0064111 Lupinus albus HOM05D005642 ORTHO05D006672 1.9e-31 141.4 484 31.0
PGR044G2675 Punica granatum HOM05D005642 ORTHO05D006672 3.2e-31 140.6 345 31.9
Phvul.009G100600 Phaseolus vulgaris HOM05D005642 ORTHO05D006672 5.5e-31 139.8 423 33.1
BraA01t00636Z Brassica rapa HOM05D005642 ORTHO05D006672 7.1e-31 139.4 311 36.0
Migut.E01422 Erythranthe guttata HOM05D005642 ORTHO05D006672 2.1e-30 137.9 326 34.4
Peaxi162Scf00045g01740 Petunia axillaris HOM05D005642 ORTHO05D006672 4.6e-30 136.7 537 30.9
BcaB03g12695 Brassica carinata HOM05D005642 ORTHO05D006672 1.0e-29 135.6 407 31.7
Glyma.06G075900 Glycine max HOM05D005642 ORTHO05D006672 1.8e-29 134.8 505 31.1
Sopen08g002430 Solanum pennellii HOM05D005642 ORTHO05D006672 3.0e-29 134.0 369 33.1
AT4G31430 Arabidopsis thaliana HOM05D005642 ORTHO05D006672 3.9e-29 133.7 355 33.0
BolC3t21109H Brassica oleracea HOM05D005642 ORTHO05D006672 5.1e-29 133.3 498 30.3
COL.COLO4_19042 Corchorus olitorius HOM05D005642 ORTHO05D006672 5.1e-29 133.3 432 34.7
CANSAT78G0024 Cannabis sativa HOM05D005642 ORTHO05D006672 8.7e-29 132.5 543 29.8
CARHR239310 Cardamine hirsuta HOM05D005642 ORTHO05D006672 8.7e-29 132.5 338 34.6
Cfa013263 Carpinus fangiana HOM05D005642 ORTHO05D006672 1.1e-28 132.1 372 33.9
AL7G20630 Arabidopsis lyrata HOM05D005642 ORTHO05D006672 1.5e-28 131.7 344 32.0
Glyma.04G074900 Glycine max HOM05D005642 ORTHO05D006672 1.5e-28 131.7 291 36.4
SGA_v2.0_scaffold27G11668 Striga asiatica HOM05D005642 ORTHO05D006672 1.9e-28 131.3 505 33.5
Carub.0007s0913 Capsella rubella HOM05D005642 ORTHO05D006672 2.5e-28 131.0 367 30.5
Migut.A00441 Erythranthe guttata HOM05D005642 ORTHO05D006672 5.7e-28 129.8 550 31.1
Nn8g40457 Nelumbo nucifera HOM05D005642 ORTHO05D006672 2.2e-27 127.9 402 31.6
SalBow8G4661 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.2e-27 127.9 464 31.5
Potri.018G006200 Populus trichocarpa HOM05D005642 ORTHO05D006672 3.7e-27 127.1 483 31.9
Sabra18G0014300 Salix brachista HOM05D005642 ORTHO05D006672 3.7e-27 127.1 331 34.1
BcaC09g51922 Brassica carinata HOM05D005642 ORTHO05D006672 6.3e-27 126.3 543 31.7
C01p07620 Brassica napus HOM05D005642 ORTHO05D006672 6.3e-27 126.3 543 31.7
Aa31LG2G18900 Aethionema arabicum HOM05D005642 ORTHO05D006672 2.4e-26 124.4 468 30.1
A01p06850 Brassica napus HOM05D005642 ORTHO05D006672 4.1e-26 123.6 529 28.4
Potri.006G275200 Populus trichocarpa HOM05D005642 ORTHO05D006672 1.2e-25 122.1 487 32.9
Solyc08g006480.3 Solanum lycopersicum HOM05D005642 ORTHO05D006672 3.4e-25 120.6 547 28.7
BolC1t00742H Brassica oleracea HOM05D005642 ORTHO05D006672 5.9e-25 119.8 565 27.8
BcaNung04589 Brassica carinata HOM05D005642 ORTHO05D006672 8.5e-24 115.9 539 28.6
Gohir.D05G067500 Gossypium hirsutum HOM05D005642 ORTHO05D006672 8.5e-24 115.9 344 31.7
BcaNung04578 Brassica carinata HOM05D005642 ORTHO05D006672 1.2e-22 112.1 497 28.2
Gohir.A05G064900 Gossypium hirsutum HOM05D005642 ORTHO05D006672 1.2e-22 112.1 348 31.3
Gorai.009G068300 Gossypium raimondii HOM05D005642 ORTHO05D006672 2.1e-22 111.3 345 30.7
MELO3C003630.2 Cucumis melo HOM05D005642 ORTHO05D006672 6.1e-22 109.8 303 35.3
PSO170G3270 Papaver somniferum HOM05D005642 ORTHO05D006672 1.0e-21 109.0 430 27.7
Eucgr.C04006 Eucalyptus grandis HOM05D005642 ORTHO05D006672 6.7e-21 106.3 251 34.3
Oeu019279.2 Olea europaea HOM05D005642 ORTHO05D006672 1.5e-20 105.1 267 36.3
Atru.chr7.2633 Acer truncatum HOM05D005642 ORTHO05D006672 2.5e-20 104.4 209 37.8
MBI16_g31790_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 1.3e-19 102.1 539 28.6
CDE05G2573 Ceratophyllum demersum HOM05D006228 ORTHO05D007847 2.2e-19 101.3 490 29.4
MD08G1130500 Malus domestica HOM05D005642 ORTHO05D006672 6.3e-19 99.8 473 30.2
Aqoxy7G02962 Aquilegia oxysepala HOM05D005642 ORTHO05D006672 3.1e-18 97.4 364 32.1
Sabra06G0213000 Salix brachista HOM05D005642 ORTHO05D006672 9.1e-18 95.9 506 29.1
Nitab4.5_0004131g0010 Nicotiana tabacum HOM05D005642 ORTHO05D006672 3.4e-17 94.0 526 28.7
Cpa.g.sc23.5 Carica papaya HOM05D005642 ORTHO05D006672 1.3e-16 92.0 292 30.1
Nitab4.5_0000555g0260 Nicotiana tabacum HOM05D005642 ORTHO05D006672 1.7e-16 91.7 402 29.1
PSO063G4833 Papaver somniferum HOM05D005642 ORTHO05D006672 1.7e-16 91.7 581 27.5
Oeu048000.1 Olea europaea HOM05D005642 ORTHO05D006672 3.2e-15 87.4 373 30.8
SHI21128 Sapria himalayana HOM05D005642 ORTHO05D006672 1.2e-14 85.5 178 37.1
BraA03t15110Z Brassica rapa HOM05D005642 ORTHO05D006672 2.1e-14 84.7 191 34.0
SalBow4G3316 Salvia bowleyana HOM05D005642 ORTHO05D006672 2.1e-14 84.7 504 25.6
MBI14_g08146_MAGBIO Magnolia biondii HOM05D005642 ORTHO05D006672 4.7e-14 83.6 334 28.7
Lsat_1_v5_gn_5_61101 Lactuca sativa HOM05D005642 ORTHO05D006672 6.1e-14 83.2 390 29.5
CDE07G1180 Ceratophyllum demersum HOM05D005642 ORTHO05D006672 1.8e-13 81.6 277 30.0
HPP92_015370 Vanilla planifolia HOM05D005642 ORTHO05D006672 3.0e-13 80.9 294 28.2
vmacro00200 Vaccinium macrocarpon HOM05D005642 ORTHO05D006672 6.7e-13 79.7 499 24.4
HanXRQChr13g0412371 Helianthus annuus HOM05D005642 ORTHO05D006672 2.6e-12 77.8 267 30.3
HanXRQChr03g0082481 Helianthus annuus HOM05D005642 ORTHO05D006672 5.3e-10 70.1 179 38.0
Atru.chr7.2632 Acer truncatum HOM05D005642 ORTHO05D006672 2.6e-09 67.8 149 44.3
Oeu014127.1 Olea europaea HOM05D005642 ORTHO05D006672 7.7e-09 66.2 137 36.5
ECA240G1730 Erigeron canadensis HOM05D000542 ORTHO05D006672 1.7e-08 65.1 468 25.0
SEGI_30019 Sequoiadendron giganteum HOM05D003044 ORTHO05D006672 1.7e-08 65.1 290 33.1
MD00G1205700 Malus domestica HOM05D005642 ORTHO05D006672 4.2e-07 60.5 87 49.4
unitig_0.g2821 Utricularia gibba HOM05D005642 ORTHO05D006672 7.2e-07 59.7 181 34.8
Zm00001eb432470 Zea mays HOM05D005642 ORTHO05D006672 7.2e-07 59.7 514 24.1
Os04g0655600 Oryza sativa ssp. japonica HOM05D005642 ORTHO05D006672 2.7e-06 57.8 240 27.9
HPP92_018374 Vanilla planifolia HOM05D005642 ORTHO05D006672 3.6e-06 57.4 385 23.4
arahy.Tifrunner.gnm1.ann1.GW4HJP Arachis hypogaea HOM05D000013 ORTHO05D021469 4.7e-06 57.0 135 31.1


User provided reference genes

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