Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043620 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.0e-259 896.7 444 100.0
EL10Ac2g03631 Beta vulgaris HOM05D004385 ORTHO05D005245 4.4e-168 595.1 474 64.6
AUR62028000 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.3e-166 588.2 483 62.9
Hund03234 Selenicereus undatus HOM05D004385 ORTHO05D005245 2.6e-165 585.9 453 65.3
AUR62028001 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.2e-163 578.6 476 61.1
EL10Ac2g03630 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-162 575.9 494 59.7
EL10Ac2g04866 Beta vulgaris HOM05D004385 ORTHO05D005245 2.7e-157 559.3 452 63.5
EL10Ac2g03632 Beta vulgaris HOM05D004385 ORTHO05D005245 1.3e-156 557.0 452 62.2
EL10Ac2g03633 Beta vulgaris HOM05D004385 ORTHO05D005245 1.7e-156 556.6 471 59.9
AUR62027997 Chenopodium quinoa HOM05D004385 ORTHO05D005245 9.4e-155 550.8 484 59.5
EL10Ac2g04868 Beta vulgaris HOM05D004385 ORTHO05D005245 3.0e-153 545.8 449 62.1
AUR62020716 Chenopodium quinoa HOM05D004385 ORTHO05D005245 5.2e-153 545.0 474 58.9
EL10Ac2g03634 Beta vulgaris HOM05D004385 ORTHO05D005245 4.8e-151 538.5 454 60.4
AUR62028006 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.1e-150 535.8 473 57.7
Ah.11g043630 Amaranthus hybridus HOM05D004385 ORTHO05D005245 7.0e-150 534.6 449 60.8
DCAR_023663 Daucus carota HOM05D004385 ORTHO05D005245 5.0e-148 528.5 480 57.1
Hma1.2p1_0284F.1_g113840 Hydrangea macrophylla HOM05D004385 ORTHO05D005245 1.2e-146 523.9 468 57.1
Prupe.1G065500 Prunus persica HOM05D004385 ORTHO05D005245 8.0e-146 521.2 481 55.5
vmacro22292 Vaccinium macrocarpon HOM05D004385 ORTHO05D005245 1.4e-145 520.4 483 56.7
Thecc.09G194100 Theobroma cacao HOM05D004385 ORTHO05D005245 2.3e-145 519.6 481 56.3
Gorai.009G001300 Gossypium raimondii HOM05D004385 ORTHO05D005245 4.0e-145 518.8 484 57.0
Nitab4.5_0001205g0010 Nicotiana tabacum HOM05D004385 ORTHO05D005245 4.0e-145 518.8 450 58.2
Gohir.D05G001400 Gossypium hirsutum HOM05D004385 ORTHO05D005245 6.8e-145 518.1 484 57.0
Cpa.g.sc123.33 Carica papaya HOM05D004385 ORTHO05D005245 8.9e-145 517.7 478 55.6
Rhsim05G0069600 Rhododendron simsii HOM05D004385 ORTHO05D005245 4.4e-144 515.4 483 55.9
Dinv26468 Davidia involucrata HOM05D004385 ORTHO05D005245 7.5e-144 514.6 481 55.1
MD16G1239400 Malus domestica HOM05D004385 ORTHO05D005245 1.7e-143 513.5 479 54.5
Nitab4.5_0000413g0040 Nicotiana tabacum HOM05D004385 ORTHO05D005245 2.2e-143 513.1 450 57.8
QL11p009243 Quercus lobata HOM05D004385 ORTHO05D005245 2.2e-143 513.1 480 55.2
Glyma.12G049000 Glycine max HOM05D004385 ORTHO05D005245 3.7e-143 512.3 481 55.7
Gohir.A05G001100 Gossypium hirsutum HOM05D004385 ORTHO05D005245 4.9e-143 511.9 483 56.3
Potri.018G138206 Populus trichocarpa HOM05D004385 ORTHO05D005245 4.9e-143 511.9 481 56.3
Haze_19053 Corylus avellana HOM05D004385 ORTHO05D005245 6.3e-143 511.5 482 55.4
RcHm_v2.0_Chr4g0397951 Rosa chinensis HOM05D004385 ORTHO05D005245 1.4e-142 510.4 479 54.3
Sed0013454 Sechium edule HOM05D004385 ORTHO05D005245 1.4e-142 510.4 480 55.0
Peaxi162Scf00320g00412 Petunia axillaris HOM05D004385 ORTHO05D005245 2.4e-142 509.6 451 56.8
Ca_20811_v3 Cicer arietinum L. HOM05D004385 ORTHO05D005245 3.1e-142 509.2 480 55.4
FvH4_4g06230 Fragaria vesca HOM05D004385 ORTHO05D005245 5.4e-142 508.4 480 54.4
arahy.Tifrunner.gnm1.ann1.D17V0C Arachis hypogaea HOM05D004385 ORTHO05D005245 1.6e-141 506.9 481 54.5
arahy.Tifrunner.gnm1.ann1.77JVZB Arachis hypogaea HOM05D004385 ORTHO05D005245 2.0e-141 506.5 481 54.5
Sopen07g005830 Solanum pennellii HOM05D004385 ORTHO05D005245 2.0e-141 506.5 478 54.8
CANSAT80G1931 Cannabis sativa HOM05D004385 ORTHO05D005245 1.0e-140 504.2 479 54.1
Medtr4g068240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.3e-140 503.8 481 54.1
VMungo1127G2221 Vigna mungo HOM05D004385 ORTHO05D005245 1.7e-140 503.4 480 55.4
Medtr4g068230 Medicago truncatula HOM05D004385 ORTHO05D005245 2.9e-140 502.7 479 54.3
Phvul.011G051300 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 3.9e-140 502.3 477 55.1
Duzib168G1467 Durio zibethinus HOM05D004385 ORTHO05D005245 6.6e-140 501.5 472 56.4
Phvul.011G051400 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 8.6e-140 501.1 479 55.7
Lj3g0012868 Lotus japonicus HOM05D004385 ORTHO05D005245 1.1e-139 500.7 481 54.7
Medtr4g068270 Medicago truncatula HOM05D004385 ORTHO05D005245 1.9e-139 500.0 481 53.6
TWI32G0217 Tripterygium wilfordii HOM05D004385 ORTHO05D005245 4.3e-139 498.8 489 54.0
Psat0s5298g0040 Pisum sativum HOM05D004385 ORTHO05D005245 7.3e-139 498.0 480 54.0
Migut.B00849 Erythranthe guttata HOM05D004385 ORTHO05D005245 9.5e-139 497.7 474 56.1
FAN12G0289 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.2e-138 497.3 508 51.4
ClCG06G014050 Citrullus lanatus HOM05D004385 ORTHO05D005245 1.6e-138 496.9 480 53.3
TAR626G1834 Trochodendron aralioides HOM05D004385 ORTHO05D005245 2.1e-138 496.5 480 53.8
Atru.chr7.972_Atru.chr7.973 Acer truncatum HOM05D004385 ORTHO05D005245 2.8e-138 496.1 492 54.7
CsaV3_2G035400 Cucumis sativus L. HOM05D004385 ORTHO05D005245 2.8e-138 496.1 480 52.9
Manes.03G078400 Manihot esculenta HOM05D004385 ORTHO05D005245 3.6e-138 495.7 480 55.0
CSS0002376 Camellia sinensis var. sinensis HOM05D004385 ORTHO05D005245 4.7e-138 495.4 484 53.1
Nn1g09800 Nelumbo nucifera HOM05D004385 ORTHO05D005245 1.0e-137 494.2 487 53.4
MSTRG.10464 Avicennia marina HOM05D004385 ORTHO05D005245 1.4e-137 493.8 481 54.1
TPR.G34256 Trifolium pratense HOM05D004385 ORTHO05D005245 1.4e-137 493.8 480 54.2
CANSAT80G0643 Cannabis sativa HOM05D004385 ORTHO05D005245 2.3e-137 493.0 478 53.6
Lalb_Chr19g0138471 Lupinus albus HOM05D004385 ORTHO05D005245 3.1e-137 492.7 480 53.5
Cc00_g00450 Coffea canephora HOM05D004385 ORTHO05D005245 4.0e-137 492.3 478 54.4
Haze_19054 Corylus avellana HOM05D004385 ORTHO05D005245 4.0e-137 492.3 504 52.6
ClCG06G014070 Citrullus lanatus HOM05D004385 ORTHO05D005245 8.9e-137 491.1 479 53.7
COL.COLO4_24913 Corchorus olitorius HOM05D004385 ORTHO05D005245 8.9e-137 491.1 482 55.0
Manes.03G078300 Manihot esculenta HOM05D004385 ORTHO05D005245 8.9e-137 491.1 482 53.9
Phvul.011G051100 Phaseolus vulgaris HOM05D004385 ORTHO05D005245 8.9e-137 491.1 477 54.7
Lsat_1_v5_gn_7_57600 Lactuca sativa HOM05D004385 ORTHO05D005245 2.0e-136 490.0 475 54.9
VMungo1127G1209 Vigna mungo HOM05D004385 ORTHO05D005245 2.6e-136 489.6 477 53.9
Cc00_g00420 Coffea canephora HOM05D004385 ORTHO05D005245 3.4e-136 489.2 476 54.4
SGA_v2.0_scaffold21G09624 Striga asiatica HOM05D004385 ORTHO05D005245 4.4e-136 488.8 469 54.8
Cpa.g.sc123.32 Carica papaya HOM05D004385 ORTHO05D005245 2.2e-135 486.5 497 51.5
Eucgr.C02022 Eucalyptus grandis HOM05D004385 ORTHO05D005245 4.1e-134 482.3 478 52.7
Sabra18G0119900 Salix brachista HOM05D004385 ORTHO05D005245 7.0e-134 481.5 487 54.0
MELO3C019214.2 Cucumis melo HOM05D004385 ORTHO05D005245 9.2e-134 481.1 517 49.1
Oeu028831.1 Olea europaea HOM05D004385 ORTHO05D005245 2.7e-133 479.6 479 53.4
HanXRQChr03g0067331 Helianthus annuus HOM05D004385 ORTHO05D005245 1.3e-132 477.2 476 51.9
Sed0010902 Sechium edule HOM05D004385 ORTHO05D005245 1.7e-132 476.9 481 50.5
MBI11_g07424_MAGBIO Magnolia biondii HOM05D004385 ORTHO05D005245 1.5e-131 473.8 481 50.5
ECA240G2514 Erigeron canadensis HOM05D004385 ORTHO05D005245 9.5e-131 471.1 477 51.4
CiPaw.15G156000 Carya illinoinensis HOM05D004385 ORTHO05D005245 6.2e-130 468.4 475 52.0
Psat0s8631g0040 Pisum sativum HOM05D004385 ORTHO05D005245 8.0e-130 468.0 480 52.3
Sed0010048 Sechium edule HOM05D004385 ORTHO05D005245 1.2e-128 464.2 480 49.2
PGR142G0778 Punica granatum HOM05D004385 ORTHO05D005245 2.6e-128 463.0 483 50.9
Sed0018057 Sechium edule HOM05D004385 ORTHO05D005245 4.4e-128 462.2 480 50.2
Peaxi162Scf00320g00411 Petunia axillaris HOM05D004385 ORTHO05D005245 7.8e-125 451.4 486 49.2
ATR1147G022 Amborella trichopoda HOM05D004385 ORTHO05D005245 3.0e-124 449.5 486 50.2
TPR.G10229 Trifolium pratense HOM05D004385 ORTHO05D005245 5.6e-123 445.3 577 44.7
HPP92_003174 Vanilla planifolia HOM05D004385 ORTHO05D005245 4.7e-122 442.2 482 50.0
HanXRQChr03g0067221 Helianthus annuus HOM05D004385 ORTHO05D005245 8.1e-122 441.4 474 49.8
ECA240G4307 Erigeron canadensis HOM05D004385 ORTHO05D005245 1.1e-121 441.0 477 48.8
Solyc07g015980.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 2.6e-120 436.4 478 49.6
Peaxi162Scf00320g00316 Petunia axillaris HOM05D004385 ORTHO05D005245 6.4e-119 431.8 485 48.2
Potri.018G145600 Populus trichocarpa HOM05D004385 ORTHO05D005245 1.1e-118 431.0 420 54.8
HanXRQChr03g0067391 Helianthus annuus HOM05D004385 ORTHO05D005245 1.4e-118 430.6 478 49.2
RhsimUnG0051500 Rhododendron simsii HOM05D004385 ORTHO05D005245 9.2e-118 427.9 490 49.2
SEGI_12293 Sequoiadendron giganteum HOM05D004385 ORTHO05D005245 3.3e-115 419.5 488 47.5
Migut.L01912 Erythranthe guttata HOM05D004385 ORTHO05D005245 1.5e-112 410.6 379 58.0
Sc06g0001470 Simmondsia chinensis HOM05D004385 ORTHO05D005245 7.6e-112 408.3 392 54.8
CDE06G1948 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 1.3e-108 397.5 427 49.9
Atru.chr9.1512 Acer truncatum HOM05D004385 ORTHO05D005245 1.7e-108 397.1 491 48.5
PGSC0003DMG400022081 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.3e-106 391.0 433 49.7
Peaxi162Scf00320g00317 Petunia axillaris HOM05D004385 ORTHO05D005245 2.8e-106 389.8 485 45.6
Mapoly0055s0075 Marchantia polymorpha HOM05D004385 ORTHO05D005245 6.9e-105 385.2 497 42.9
Rhsim03G0268600 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.3e-103 380.9 482 46.3
Cpa.g.sc123.30 Carica papaya HOM05D004385 ORTHO05D005245 7.1e-102 375.2 479 45.1
Rhsim01G0218300 Rhododendron simsii HOM05D004385 ORTHO05D005245 1.2e-101 374.4 346 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1864 Anthoceros agrestis HOM05D004385 ORTHO05D005245 1.3e-100 370.9 502 40.2
Cpa.g.sc123.31 Carica papaya HOM05D004385 ORTHO05D005245 2.8e-98 363.2 461 45.6
Zm00001eb064440 Zea mays HOM05D004385 ORTHO05D005245 1.2e-96 357.8 394 46.7
Pp3c15_21680 Physcomitrium patens HOM05D004385 ORTHO05D005245 1.5e-96 357.5 494 40.5
SGA_v2.0_scaffold21G09621 Striga asiatica HOM05D004385 ORTHO05D005245 2.2e-95 353.6 391 47.8
Cfa020737 Carpinus fangiana HOM05D004385 ORTHO05D005245 8.7e-92 341.7 329 54.4
Solyc07g016050.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.1e-86 324.7 344 49.1
FAN17G2530 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.2e-86 322.8 341 51.3
CAN.G1581.3 Capsicum annuum HOM05D004385 ORTHO05D005245 9.3e-86 321.6 329 51.1
Haze_18802 Corylus avellana HOM05D004385 ORTHO05D005245 3.5e-85 319.7 396 47.0
PGSC0003DMG400021019 Solanum tuberosum HOM05D004385 ORTHO05D005245 2.5e-83 313.5 345 50.7
Atru.chr9.1488 Acer truncatum HOM05D004385 ORTHO05D005245 8.2e-82 308.5 409 45.2
EL10Ac6g13794 Beta vulgaris HOM05D004385 ORTHO05D005245 1.1e-81 308.1 257 63.0
unitig_578.g16395 Utricularia gibba HOM05D004385 ORTHO05D005245 1.3e-79 301.2 330 48.8
CBR_g2798 Chara braunii HOM05D004385 ORTHO05D005245 6.5e-79 298.9 380 43.4
Aqoxy2G04068 Aquilegia oxysepala HOM05D004385 ORTHO05D005245 5.5e-78 295.8 400 44.2
TPR.G34194 Trifolium pratense HOM05D004385 ORTHO05D005245 3.5e-77 293.1 323 50.8
TAR626G1477 Trochodendron aralioides HOM05D004385 ORTHO05D005245 6.7e-76 288.9 295 52.2
CsaV3_1G004600 Cucumis sativus L. HOM05D004385 ORTHO05D005245 3.3e-67 260.0 233 57.1
Solyc07g016080.4 Solanum lycopersicum HOM05D004385 ORTHO05D005245 3.3e-67 260.0 276 49.3
CDE06G1657 Ceratophyllum demersum HOM05D004385 ORTHO05D005245 3.8e-63 246.5 421 38.7
Solyc07g016030.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 7.4e-59 232.3 348 40.2
Migut.L00572 Erythranthe guttata HOM05D004385 ORTHO05D005245 2.0e-56 224.2 220 50.9
AUR62020718 Chenopodium quinoa HOM05D004385 ORTHO05D005245 4.5e-56 223.0 197 55.8
AUR62028003 Chenopodium quinoa HOM05D004385 ORTHO05D005245 1.6e-53 214.5 193 58.5
Migut.L00391 Erythranthe guttata HOM05D004385 ORTHO05D005245 8.0e-53 212.2 211 49.8
Cre02.g105150 Chlamydomonas reinhardtii HOM05D004385 ORTHO05D005245 2.6e-51 207.2 589 28.0
AUR62020720 Chenopodium quinoa HOM05D004385 ORTHO05D005245 8.2e-50 202.2 172 59.9
PRCOL_00000420 Prasinoderma coloniale HOM05D004385 ORTHO05D005245 1.7e-42 177.9 462 29.7
CAN.G1581.2 Capsicum annuum HOM05D004385 ORTHO05D005245 1.8e-41 174.5 112 74.1
SalBow5G2207 Salvia bowleyana HOM05D004385 ORTHO05D005245 9.1e-41 172.2 117 70.9
Psat1g029120 Pisum sativum HOM05D000870 ORTHO05D000715 1.6e-40 171.4 112 73.2
AUR62028004 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.7e-40 170.6 114 70.2
unitig_578.g16396 Utricularia gibba HOM05D004385 ORTHO05D005245 3.5e-40 170.2 117 70.9
FAN07G2444 Fragaria x ananassa HOM05D004385 ORTHO05D005245 1.5e-38 164.9 112 66.1
FAN22G1494 Fragaria x ananassa HOM05D004385 ORTHO05D005245 4.2e-38 163.3 112 65.2
Sopen07g016620 Solanum pennellii HOM05D004385 ORTHO05D005245 4.2e-38 163.3 112 69.6
MELO3C017386.2 Cucumis melo HOM05D004385 ORTHO05D005245 8.3e-34 149.1 162 50.0
Sopen00g013700 Solanum pennellii HOM05D004385 ORTHO05D005245 7.7e-32 142.5 112 65.2
Sopen07g016630 Solanum pennellii HOM05D004385 ORTHO05D005245 6.6e-31 139.4 188 42.6
Solyc07g016020.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 4.0e-28 130.2 107 62.6
AUR62020721 Chenopodium quinoa HOM05D004385 ORTHO05D005245 2.6e-27 127.5 81 71.6
Solyc07g016040.3 Solanum lycopersicum HOM05D004385 ORTHO05D005245 6.4e-26 122.9 90 70.0
Solyc07g032590.1 Solanum lycopersicum HOM05D004385 ORTHO05D005245 1.3e-23 115.2 139 45.3
AUR62027998 Chenopodium quinoa HOM05D004385 ORTHO05D005245 3.9e-23 113.6 92 58.7
Psat0s3373g0120 Pisum sativum HOM05D000870 ORTHO05D005245 5.6e-22 109.8 77 66.2
PGSC0003DMG400007349 Solanum tuberosum HOM05D004385 ORTHO05D005245 1.1e-17 95.5 76 53.9
GSVIVG01026776001 Vitis vinifera HOM05D004385 ORTHO05D005245 7.5e-11 72.8 67 44.8
Medtr5g096240 Medicago truncatula HOM05D004385 ORTHO05D005245 1.1e-09 68.9 73 47.9
Medtr4g117010 Medicago truncatula HOM05D004385 ORTHO05D005245 2.4e-09 67.8 73 46.6


User provided reference genes

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