Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043570 Amaranthus hybridus HOM05D006054 ORTHO05D007951 2.6e-133 478.8 249 100.0
AUR62043302 Chenopodium quinoa HOM05D006054 ORTHO05D007951 1.6e-74 283.5 296 59.8
AUR62041524 Chenopodium quinoa HOM05D006054 ORTHO05D007951 1.1e-70 270.8 214 67.8
Aqoxy3G04019 Aquilegia oxysepala HOM05D006054 ORTHO05D007951 2.7e-66 256.1 259 56.0
Lalb_Chr16g0387101 Lupinus albus HOM05D006054 ORTHO05D007951 3.5e-66 255.8 242 57.4
Lj4g0021104 Lotus japonicus HOM05D006054 ORTHO05D007951 1.3e-65 253.8 192 67.7
VMungo0251G3760 Vigna mungo HOM05D006054 ORTHO05D007951 1.7e-65 253.4 244 58.2
COL.COLO4_16137 Corchorus olitorius HOM05D006054 ORTHO05D007951 3.0e-65 252.7 187 71.1
GSVIVG01008414001 Vitis vinifera HOM05D006054 ORTHO05D007951 3.0e-65 252.7 226 60.6
Duzib084G0786 Durio zibethinus HOM05D006054 ORTHO05D007951 6.6e-65 251.5 187 70.1
Nitab4.5_0008639g0010 Nicotiana tabacum HOM05D006054 ORTHO05D007951 6.6e-65 251.5 256 56.6
Gorai.004G202900 Gossypium raimondii HOM05D006054 ORTHO05D007951 1.1e-64 250.8 186 68.8
Phvul.002G328804 Phaseolus vulgaris HOM05D006054 ORTHO05D007951 1.1e-64 250.8 215 60.5
Medtr8g107010 Medicago truncatula HOM05D006054 ORTHO05D007951 4.3e-64 248.8 239 56.9
CiPaw.15G140700 Carya illinoinensis HOM05D006054 ORTHO05D007951 7.3e-64 248.1 220 60.0
Gohir.D08G192800 Gossypium hirsutum HOM05D006054 ORTHO05D007951 7.3e-64 248.1 186 67.7
Psat7g002000 Pisum sativum HOM05D006054 ORTHO05D007951 7.3e-64 248.1 215 59.5
Nn4g24192 Nelumbo nucifera HOM05D006054 ORTHO05D007951 9.6e-64 247.7 188 67.6
CAN.G1129.15 Capsicum annuum HOM05D006054 ORTHO05D007951 1.3e-63 247.3 257 56.8
Gohir.A08G174100 Gossypium hirsutum HOM05D006054 ORTHO05D007951 1.3e-63 247.3 186 67.7
THA.LOC104812166 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 1.3e-63 247.3 187 66.8
Ca_17203_v3 Cicer arietinum L. HOM05D006054 ORTHO05D007951 2.8e-63 246.1 234 56.8
Potri.012G048300 Populus trichocarpa HOM05D006054 ORTHO05D007951 2.8e-63 246.1 235 58.7
TPR.G1413 Trifolium pratense HOM05D006054 ORTHO05D007951 2.8e-63 246.1 236 56.4
Glyma.08G052800 Glycine max HOM05D006054 ORTHO05D007951 4.8e-63 245.4 189 67.2
TWI60G0269 Tripterygium wilfordii HOM05D006054 ORTHO05D007951 4.8e-63 245.4 194 66.5
Actinidia35123 Actinidia chinensis HOM05D006054 ORTHO05D007951 6.2e-63 245.0 252 54.8
Cpa.g.sc3.410 Carica papaya HOM05D006054 ORTHO05D007951 6.2e-63 245.0 186 65.6
Eucgr.K02266 Eucalyptus grandis HOM05D006054 ORTHO05D007951 6.2e-63 245.0 186 67.2
PSO478G4576 Papaver somniferum HOM05D006054 ORTHO05D007951 6.2e-63 245.0 263 55.5
Nitab4.5_0001986g0060 Nicotiana tabacum HOM05D000239 ORTHO05D000484 1.1e-62 244.2 190 66.8
PGR044G0876 Punica granatum HOM05D006054 ORTHO05D007951 1.1e-62 244.2 204 61.8
AUR62042074 Chenopodium quinoa HOM05D006054 ORTHO05D007951 1.4e-62 243.8 282 55.0
Manes.14G170200 Manihot esculenta HOM05D006054 ORTHO05D007951 2.4e-62 243.0 251 55.4
Thecc.03G053300 Theobroma cacao HOM05D006054 ORTHO05D007951 2.4e-62 243.0 254 57.1
TAR371G0894 Trochodendron aralioides HOM05D006054 ORTHO05D007951 2.4e-62 243.0 185 68.6
Oeu026288.1 Olea europaea HOM05D006054 ORTHO05D007951 3.1e-62 242.7 201 61.7
CsaV3_1G007080 Cucumis sativus L. HOM05D006054 ORTHO05D007951 5.3e-62 241.9 188 64.4
PSO017G1288 Papaver somniferum HOM05D006054 ORTHO05D007951 5.3e-62 241.9 268 53.0
Sabra12G0033800 Salix brachista HOM05D006054 ORTHO05D007951 5.3e-62 241.9 188 66.0
HanXRQChr08g0227401 Helianthus annuus HOM05D006054 ORTHO05D007951 6.9e-62 241.5 213 62.0
Glyma.05G245200 Glycine max HOM05D006054 ORTHO05D007951 9.0e-62 241.1 215 60.5
Rhsim12G0139100 Rhododendron simsii HOM05D006054 ORTHO05D007951 1.2e-61 240.7 184 67.4
Sopen03g038040 Solanum pennellii HOM05D006054 ORTHO05D007951 1.5e-61 240.4 256 55.5
Cc04_g06390 Coffea canephora HOM05D006054 ORTHO05D007951 2.0e-61 240.0 247 53.8
vmacro16417 Vaccinium macrocarpon HOM05D006054 ORTHO05D007951 2.0e-61 240.0 257 52.9
CSS0009173 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 2.6e-61 239.6 189 65.6
CSS0029176 Camellia sinensis var. sinensis HOM05D006054 ORTHO05D007951 2.6e-61 239.6 189 65.6
Cfa019678 Carpinus fangiana HOM05D006054 ORTHO05D007951 2.6e-61 239.6 184 66.3
ClCG04G010700 Citrullus lanatus HOM05D006054 ORTHO05D007951 4.5e-61 238.8 186 64.0
QL10p028192 Quercus lobata HOM05D006054 ORTHO05D007951 4.5e-61 238.8 219 58.0
QL10p028307 Quercus lobata HOM05D006054 ORTHO05D007951 5.8e-61 238.4 182 66.5
Lj5A155T99 Lonicera japonica HOM05D006054 ORTHO05D007951 1.3e-60 237.3 254 54.7
PGSC0003DMG400005734 Solanum tuberosum HOM05D006054 ORTHO05D007951 2.2e-60 236.5 260 53.8
Lj5A156T88 Lonicera japonica HOM05D006054 ORTHO05D007951 3.8e-60 235.7 252 54.0
DCAR_014010 Daucus carota HOM05D006054 ORTHO05D007951 6.4e-60 235.0 241 54.8
arahy.Tifrunner.gnm1.ann1.LZ1976 Arachis hypogaea HOM05D006054 ORTHO05D007951 1.1e-59 234.2 186 65.6
Migut.I00447 Erythranthe guttata HOM05D006054 ORTHO05D007951 1.1e-59 234.2 273 50.5
arahy.Tifrunner.gnm1.ann1.FT2DSH Arachis hypogaea HOM05D006054 ORTHO05D007951 1.4e-59 233.8 186 65.6
MD06G1230600 Malus domestica HOM05D006054 ORTHO05D007951 1.9e-59 233.4 194 60.3
Solyc03g119150.4 Solanum lycopersicum HOM05D006054 ORTHO05D007951 1.9e-59 233.4 256 54.3
Hma1.2p1_0669F.1_g200190 Hydrangea macrophylla HOM05D006054 ORTHO05D007951 3.2e-59 232.6 227 58.1
FAN18G0499 Fragaria x ananassa HOM05D006054 ORTHO05D007951 5.4e-59 231.9 187 62.6
MBI12_g30399_MAGBIO Magnolia biondii HOM05D006054 ORTHO05D007951 7.1e-59 231.5 253 54.5
Lsat_1_v5_gn_8_144020 Lactuca sativa HOM05D006054 ORTHO05D007951 1.2e-58 230.7 189 65.1
AT1G18170 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 1.6e-58 230.3 188 62.8
Os03g0708500 Oryza sativa ssp. japonica HOM05D006054 ORTHO05D007951 1.6e-58 230.3 188 62.8
Sed0027930 Sechium edule HOM05D006054 ORTHO05D007951 1.6e-58 230.3 263 51.7
A09p60070 Brassica napus HOM05D006054 ORTHO05D007951 2.1e-58 229.9 250 50.8
Ciclev10009243m.g Citrus clementina HOM05D006054 ORTHO05D007951 2.7e-58 229.6 253 53.8
Carub.0001s1781 Capsella rubella HOM05D006054 ORTHO05D007951 4.6e-58 228.8 203 58.1
AL1G30540 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 6.0e-58 228.4 186 62.4
MSTRG.4570 Avicennia marina HOM05D006054 ORTHO05D007951 1.0e-57 227.6 250 52.8
BraA09t41376Z Brassica rapa HOM05D006054 ORTHO05D007951 1.3e-57 227.3 258 50.4
RcHm_v2.0_Chr7g0178601 Rosa chinensis HOM05D006054 ORTHO05D007951 1.3e-57 227.3 262 49.6
BolC8t51897H Brassica oleracea HOM05D006054 ORTHO05D007951 1.8e-57 226.9 187 59.4
Prupe.5G231900 Prunus persica HOM05D006054 ORTHO05D007951 1.8e-57 226.9 270 50.4
BcaC07g41342 Brassica carinata HOM05D006054 ORTHO05D007951 3.9e-57 225.7 203 58.1
FAN04G0820 Fragaria x ananassa HOM05D006054 ORTHO05D007951 5.1e-57 225.3 262 49.2
Aa31LG7G2900 Aethionema arabicum HOM05D006054 ORTHO05D007951 8.7e-57 224.6 185 60.5
ECA233G1701 Erigeron canadensis HOM05D006054 ORTHO05D007951 8.7e-57 224.6 242 55.4
Thhalv10008547m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 1.1e-56 224.2 187 61.0
FAN08G1083 Fragaria x ananassa HOM05D006054 ORTHO05D007951 1.5e-56 223.8 186 60.8
C08p43510 Brassica napus HOM05D006054 ORTHO05D007951 2.5e-56 223.0 259 49.4
Zm00001eb216540 Zea mays HOM05D006054 ORTHO05D007951 4.3e-56 222.2 187 61.0
Peaxi162Scf00683g00146 Petunia axillaris HOM05D006054 ORTHO05D007951 1.3e-55 220.7 245 53.5
MD14G1235200 Malus domestica HOM05D006054 ORTHO05D007951 3.7e-55 219.2 252 50.8
Nitab4.5_0004028g0050 Nicotiana tabacum HOM05D000239 ORTHO05D000484 2.4e-54 216.5 243 53.5
THA.LOC104813923 Tarenaya hassleriana HOM05D006054 ORTHO05D007951 2.0e-53 213.4 261 48.7
ATR1102G034 Amborella trichopoda HOM05D006054 ORTHO05D007951 2.6e-53 213.0 185 61.1
MELO3C002126.2 Cucumis melo HOM05D006054 ORTHO05D007951 9.9e-53 211.1 258 50.0
Dinv18255 Davidia involucrata HOM05D006054 ORTHO05D007951 2.2e-52 209.9 188 58.0
Atru.chr9.1750 Acer truncatum HOM05D006054 ORTHO05D007951 7.1e-51 204.9 169 63.3
AagrBONN_evm.TU.Sc2ySwM_228.1432 Anthoceros agrestis HOM05D006054 ORTHO05D007951 1.8e-49 200.3 191 56.0
AT1G73655 Arabidopsis thaliana HOM05D006054 ORTHO05D007951 3.9e-49 199.1 182 53.3
Carub.0002s2040 Capsella rubella HOM05D006054 ORTHO05D007951 1.1e-48 197.6 184 54.3
Sp5g28830 Schrenkiella parvula HOM05D006054 ORTHO05D007951 1.1e-48 197.6 222 47.3
AL2G33440 Arabidopsis lyrata HOM05D006054 ORTHO05D007951 2.1e-47 193.4 183 54.1
Thhalv10019056m.g Eutrema salsugineum HOM05D006054 ORTHO05D007951 2.1e-47 193.4 234 46.6
Mapoly0139s0002 Marchantia polymorpha HOM05D006054 ORTHO05D007951 2.8e-47 193.0 183 55.7
BcaC08g45629 Brassica carinata HOM05D006054 ORTHO05D007951 4.8e-47 192.2 221 47.1
A07p29740 Brassica napus HOM05D006054 ORTHO05D007951 1.1e-46 191.0 203 49.3
BraA07t30613Z Brassica rapa HOM05D006054 ORTHO05D007951 1.8e-46 190.3 203 49.3
Pp3c16_12630 Physcomitrium patens HOM05D006054 ORTHO05D007951 1.5e-45 187.2 258 45.3
BcaB03g15721 Brassica carinata HOM05D006054 ORTHO05D007951 2.0e-45 186.8 181 52.5
C06p33920 Brassica napus HOM05D006054 ORTHO05D007951 1.0e-44 184.5 210 47.1
BolC6t38505H Brassica oleracea HOM05D006054 ORTHO05D007951 1.0e-44 184.5 210 47.1
Aa31LG4G3960 Aethionema arabicum HOM05D006054 ORTHO05D007951 1.7e-44 183.7 218 46.8
CARHR066720 Cardamine hirsuta HOM05D006054 ORTHO05D007951 1.7e-44 183.7 212 48.1
SMO200G0018 Selaginella moellendorffii HOM05D006054 ORTHO05D007951 9.3e-43 177.9 181 51.9
Haze_18811 Corylus avellana HOM05D006054 ORTHO05D007951 5.7e-40 168.7 134 63.4
Duzib068G1027 Durio zibethinus HOM05D006054 ORTHO05D007951 1.3e-39 167.5 132 64.4
TAR629G2851 Trochodendron aralioides HOM05D006054 ORTHO05D007951 5.0e-36 155.6 107 70.1
CDE07G1103 Ceratophyllum demersum HOM05D006054 ORTHO05D007597 5.5e-35 152.1 182 48.9
CARHR018740 Cardamine hirsuta HOM05D006054 ORTHO05D007951 3.9e-33 146.0 107 64.5
Hund02327 Selenicereus undatus HOM05D006054 ORTHO05D007951 6.7e-33 145.2 190 52.6
Cre02.g095097 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D007951 2.9e-28 129.8 189 40.2
Actinidia18902 Actinidia chinensis HOM05D006054 ORTHO05D007951 1.1e-24 117.9 92 63.0
Zm00001eb235390 Zea mays HOM05D006054 ORTHO05D007951 4.8e-23 112.5 92 59.8
MCO04G385 Micromonas commoda HOM05D006054 ORTHO05D007951 4.1e-22 109.4 187 35.3
PRCOL_00004995 Prasinoderma coloniale HOM05D006054 ORTHO05D007951 3.2e-19 99.8 196 35.2
CDE06G1309 Ceratophyllum demersum HOM05D006054 ORTHO05D007951 3.0e-17 93.2 154 44.8
SGA_v2.0_scaffold313G48304 Striga asiatica HOM05D006054 ORTHO05D007951 4.5e-13 79.3 120 45.8
MCO02G248 Micromonas commoda HOM05D006054 ORTHO05D007951 8.5e-12 75.1 166 28.9
PRCOL_00004958 Prasinoderma coloniale HOM05D006054 ORTHO05D007951 3.2e-11 73.2 170 30.6
MCO07G350 Micromonas commoda HOM05D006054 ORTHO05D044148 9.4e-11 71.6 107 40.2
Cre10.g454250 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D044148 8.0e-10 68.6 95 41.1
TAR629G2659 Trochodendron aralioides HOM05D006054 ORTHO05D007951 3.0e-09 66.6 102 48.0
Zm00001eb235380 Zea mays HOM05D006054 ORTHO05D007951 4.0e-09 66.2 92 44.6
BcaB05g24090 Brassica carinata HOM05D006054 ORTHO05D007951 2.2e-07 60.5 111 36.9
Cre09.g399300 Chlamydomonas reinhardtii HOM05D006054 ORTHO05D044308 6.3e-07 58.9 113 35.4


User provided reference genes

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