Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Ah.11g043450 Amaranthus hybridus HOM05D005934 ORTHO05D005165 2.6e-215 751.9 412 100.0
EL10Ac2g03586 Beta vulgaris HOM05D005934 ORTHO05D005165 5.3e-136 488.4 498 62.0
AUR62020763 Chenopodium quinoa HOM05D005934 ORTHO05D005165 1.3e-113 414.1 442 61.1
AUR62027949 Chenopodium quinoa HOM05D005934 ORTHO05D005165 3.9e-110 402.5 441 60.8
Gorai.009G314800 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.6e-108 396.0 440 58.4
Gohir.D05G297500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 3.1e-107 392.9 440 58.0
Duzib114G0889 Durio zibethinus HOM05D005934 ORTHO05D005165 4.0e-107 392.5 436 57.3
Gohir.A05G297600 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.6e-103 380.6 439 56.3
Gohir.A05G345500 Gossypium hirsutum HOM05D005934 ORTHO05D005165 1.0e-102 377.9 432 57.2
MD01G1111100 Malus domestica HOM05D005934 ORTHO05D005165 2.3e-102 376.7 465 53.3
Atru.chr12.720 Acer truncatum HOM05D005934 ORTHO05D005165 3.9e-102 375.9 442 55.7
Sc09g0006590 Simmondsia chinensis HOM05D005934 ORTHO05D005165 1.5e-101 374.0 441 55.1
Gohir.D04G084700 Gossypium hirsutum HOM05D005934 ORTHO05D005165 9.5e-101 371.3 432 56.5
RcHm_v2.0_Chr1g0363881 Rosa chinensis HOM05D005934 ORTHO05D005165 1.2e-100 370.9 473 51.8
CANSAT56G0550 Cannabis sativa HOM05D005934 ORTHO05D005165 2.8e-100 369.8 441 56.0
TPR.G1756 Trifolium pratense HOM05D005934 ORTHO05D005165 6.2e-100 368.6 430 55.6
FAN03G0840 Fragaria x ananassa HOM05D005934 ORTHO05D005165 8.1e-100 368.2 459 52.5
FvH4_7g19882 Fragaria vesca HOM05D005934 ORTHO05D005165 1.1e-99 367.9 462 52.6
arahy.Tifrunner.gnm1.ann1.H195MC Arachis hypogaea HOM05D005934 ORTHO05D005165 1.8e-99 367.1 431 54.8
CSS0026746 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 2.3e-99 366.7 420 56.7
QL08p056591 Quercus lobata HOM05D005934 ORTHO05D005165 3.1e-99 366.3 489 51.1
FAN10G0472 Fragaria x ananassa HOM05D005934 ORTHO05D005165 1.2e-98 364.4 458 52.2
Ciclev10031457m.g Citrus clementina HOM05D005934 ORTHO05D005165 2.6e-98 363.2 461 52.5
Prupe.2G216000 Prunus persica HOM05D005934 ORTHO05D005165 4.4e-98 362.5 437 53.1
Eucgr.G02812 Eucalyptus grandis HOM05D005934 ORTHO05D005165 7.5e-98 361.7 439 52.6
TWI38G0616 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 9.8e-98 361.3 457 53.4
FAN01G1479 Fragaria x ananassa HOM05D005934 ORTHO05D005165 2.2e-97 360.1 447 51.7
TAR636G3344 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.7e-97 359.4 477 52.4
FAN01G0846 Fragaria x ananassa HOM05D005934 ORTHO05D005165 4.9e-97 359.0 465 51.4
Medtr1g095640 Medicago truncatula HOM05D005934 ORTHO05D005165 4.9e-97 359.0 434 53.9
PGR142G2623 Punica granatum HOM05D005934 ORTHO05D005165 1.1e-96 357.8 457 51.2
Phvul.007G092600 Phaseolus vulgaris HOM05D005934 ORTHO05D005165 1.4e-96 357.5 427 53.4
Ca_10584_v3 Cicer arietinum L. HOM05D005934 ORTHO05D005165 1.9e-96 357.1 444 53.8
Haze_16922 Corylus avellana HOM05D005934 ORTHO05D005165 2.4e-96 356.7 456 52.2
Sp6g12980 Schrenkiella parvula HOM05D005934 ORTHO05D005165 4.1e-96 355.9 439 53.3
Thecc.10G070000 Theobroma cacao HOM05D005934 ORTHO05D005165 2.1e-95 353.6 435 53.8
Thhalv10013687m.g Eutrema salsugineum HOM05D005934 ORTHO05D005165 7.8e-95 351.7 430 52.3
C02p20680 Brassica napus HOM05D005934 ORTHO05D005165 1.7e-94 350.5 424 53.3
C03p19490 Brassica napus HOM05D005934 ORTHO05D005165 3.0e-94 349.7 442 52.5
BolC2t08210H Brassica oleracea HOM05D005934 ORTHO05D005165 6.6e-94 348.6 423 53.2
BolC3t14330H Brassica oleracea HOM05D005934 ORTHO05D005165 6.6e-94 348.6 442 52.3
arahy.Tifrunner.gnm1.ann1.W2M3W6 Arachis hypogaea HOM05D005934 ORTHO05D005165 1.1e-93 347.8 432 53.2
COL.COLO4_23717 Corchorus olitorius HOM05D005934 ORTHO05D005165 1.1e-93 347.8 435 53.8
Nitab4.5_0008994g0010 Nicotiana tabacum HOM05D005934 ORTHO05D005165 1.5e-93 347.4 429 52.7
MD07G1177300 Malus domestica HOM05D005934 ORTHO05D005165 1.9e-93 347.1 463 51.8
A03p16560 Brassica napus HOM05D005934 ORTHO05D005165 2.5e-93 346.7 441 51.7
BraA03t10943Z Brassica rapa HOM05D005934 ORTHO05D005165 2.5e-93 346.7 441 51.7
Carub.0008s1083 Capsella rubella HOM05D005934 ORTHO05D005165 3.3e-93 346.3 424 53.8
Cpa.g.sc53.46 Carica papaya HOM05D005934 ORTHO05D005165 3.3e-93 346.3 465 52.3
GSVIVG01016314001 Vitis vinifera HOM05D005934 ORTHO05D005165 4.3e-93 345.9 428 54.2
CSS0015713 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 7.3e-93 345.1 436 53.9
CARHR257410 Cardamine hirsuta HOM05D005934 ORTHO05D005165 7.3e-93 345.1 428 53.7
BcaC03g14634 Brassica carinata HOM05D005934 ORTHO05D005165 2.8e-92 343.2 419 53.2
AL8G25010 Arabidopsis lyrata HOM05D005934 ORTHO05D005165 3.6e-92 342.8 423 52.5
Psat6g182920 Pisum sativum HOM05D005934 ORTHO05D005165 1.4e-91 340.9 434 52.1
AT5G50840 Arabidopsis thaliana HOM05D005934 ORTHO05D005165 1.8e-91 340.5 440 51.1
Lj5g0021458 Lotus japonicus HOM05D005934 ORTHO05D005165 1.8e-91 340.5 431 53.4
BcaB05g24030 Brassica carinata HOM05D005934 ORTHO05D005165 3.1e-91 339.7 427 49.9
PSO339G5008 Papaver somniferum HOM05D005934 ORTHO05D005165 6.8e-91 338.6 459 51.0
Lalb_Chr02g0141961 Lupinus albus HOM05D005934 ORTHO05D005165 1.5e-90 337.4 426 52.8
Nitab4.5_0000233g0170 Nicotiana tabacum HOM05D005934 ORTHO05D005165 7.6e-90 335.1 424 52.8
BraA02t06319Z Brassica rapa HOM05D005934 ORTHO05D005165 3.7e-89 332.8 429 50.6
PSO541G4936 Papaver somniferum HOM05D005934 ORTHO05D005165 9.2e-88 328.2 451 49.9
vmacro07085 Vaccinium macrocarpon HOM05D005934 ORTHO05D005165 2.7e-87 326.6 653 40.3
A02p12610 Brassica napus HOM05D005934 ORTHO05D005165 1.0e-86 324.7 406 51.7
CSS0046829 Camellia sinensis var. sinensis HOM05D005934 ORTHO05D005165 1.3e-86 324.3 420 52.6
Manes.10G044200 Manihot esculenta HOM05D005934 ORTHO05D005165 1.7e-86 323.9 438 51.6
VMungo0720G0064 Vigna mungo HOM05D005934 ORTHO05D005165 1.7e-86 323.9 405 51.6
Sed0003296 Sechium edule HOM05D005934 ORTHO05D005165 5.1e-86 322.4 452 49.6
TWI63G0603 Tripterygium wilfordii HOM05D005934 ORTHO05D005165 1.1e-85 321.2 462 49.1
Solyc04g047750.3 Solanum lycopersicum HOM05D005934 ORTHO05D005165 1.5e-85 320.9 413 51.3
Aqoxy2G01769 Aquilegia oxysepala HOM05D005934 ORTHO05D005165 4.3e-85 319.3 433 48.0
Dinv31355 Davidia involucrata HOM05D005934 ORTHO05D005165 3.6e-84 316.2 464 49.8
Sopen04g017890 Solanum pennellii HOM05D005934 ORTHO05D005165 1.1e-83 314.7 413 50.6
CiPaw.02G175500 Carya illinoinensis HOM05D005934 ORTHO05D005165 1.5e-82 310.8 351 57.0
Glyma.20G178100 Glycine max HOM05D005934 ORTHO05D005165 6.4e-81 305.4 441 48.8
CAN.G471.3 Capsicum annuum HOM05D005934 ORTHO05D005165 1.9e-80 303.9 415 50.8
MSTRG.27465 Avicennia marina HOM05D005934 ORTHO05D005165 1.2e-79 301.2 423 50.4
unitig_899.g14449 Utricularia gibba HOM05D005934 ORTHO05D005165 3.9e-78 296.2 414 49.0
Migut.F01993 Erythranthe guttata HOM05D005934 ORTHO05D005165 3.3e-77 293.1 429 49.2
Hund19343 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.8e-76 290.0 434 49.5
ATR0759G024 Amborella trichopoda HOM05D005934 ORTHO05D005165 8.1e-76 288.5 507 41.4
THA.LOC104819151 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 1.4e-75 287.7 428 48.4
Gorai.012G094400 Gossypium raimondii HOM05D005934 ORTHO05D005165 3.1e-75 286.6 360 55.0
ClCG09G020550 Citrullus lanatus HOM05D005934 ORTHO05D005165 1.5e-74 284.3 453 44.4
Oeu043928.1 Olea europaea HOM05D005934 ORTHO05D005165 2.6e-74 283.5 422 47.6
Potri.010G219700 Populus trichocarpa HOM05D005934 ORTHO05D005165 2.9e-73 280.0 458 46.1
Cc02_g11420 Coffea canephora HOM05D005934 ORTHO05D005165 6.0e-71 272.3 410 46.1
Sabra10G0169500 Salix brachista HOM05D005934 ORTHO05D005165 1.3e-70 271.2 459 44.7
TAR633G0441 Trochodendron aralioides HOM05D005934 ORTHO05D005165 3.0e-70 270.0 471 43.7
Os03g0288600 Oryza sativa ssp. japonica HOM05D005934 ORTHO05D005165 1.9e-69 267.3 424 44.6
Zm00001eb397090 Zea mays HOM05D005934 ORTHO05D005165 4.3e-69 266.2 434 44.0
CsaV3_5G025820 Cucumis sativus L. HOM05D005934 ORTHO05D005165 1.1e-67 261.5 366 49.5
Dinv11795 Davidia involucrata HOM05D005934 ORTHO05D005165 1.8e-67 260.8 450 45.1
Aa31LG3G7310 Aethionema arabicum HOM05D005934 ORTHO05D005165 2.0e-66 257.3 413 45.5
SGA_v2.0_scaffold13G06359 Striga asiatica HOM05D005934 ORTHO05D005165 4.5e-66 256.1 411 45.0
Aa31LG3G7290 Aethionema arabicum HOM05D005934 ORTHO05D005165 1.6e-63 247.7 344 48.3
ECA238G0735 Erigeron canadensis HOM05D005934 ORTHO05D005165 1.0e-62 245.0 454 42.5
HanXRQChr14g0457271 Helianthus annuus HOM05D005934 ORTHO05D005165 2.3e-62 243.8 434 44.2
MELO3C002886.2 Cucumis melo HOM05D005934 ORTHO05D005165 6.7e-62 242.3 286 54.5
Hund22502 Selenicereus undatus HOM05D005934 ORTHO05D005165 2.5e-61 240.4 289 56.4
HanXRQChr11g0323311 Helianthus annuus HOM05D005934 ORTHO05D005165 5.6e-61 239.2 447 42.3
Zm00001eb013240 Zea mays HOM05D005934 ORTHO05D005165 7.4e-61 238.8 350 46.6
Lsat_1_v5_gn_2_113761 Lactuca sativa HOM05D005934 ORTHO05D005165 4.2e-56 223.0 442 43.7
DCAR_003640 Daucus carota HOM05D005934 ORTHO05D005165 7.1e-56 222.2 232 59.1
Lj1C919T16 Lonicera japonica HOM05D005934 ORTHO05D005165 8.2e-52 208.8 262 53.4
SMO201G0134 Selaginella moellendorffii HOM05D005934 ORTHO05D005165 1.9e-48 197.6 267 43.8
MBI05_g20541_MAGBIO Magnolia biondii HOM05D005934 ORTHO05D005165 3.8e-41 173.3 485 34.2
Mapoly0007s0101 Marchantia polymorpha HOM05D005934 ORTHO05D005165 1.0e-38 165.2 315 40.6
CBR_g15990 Chara braunii HOM05D005934 ORTHO05D005165 1.8e-35 154.5 345 34.5
Actinidia38257 Actinidia chinensis HOM05D005934 ORTHO05D005165 7.9e-31 139.0 466 31.8
Pp3c11_23150 Physcomitrium patens HOM05D005934 ORTHO05D005165 1.6e-26 124.8 460 31.1
HPP92_006750 Vanilla planifolia HOM05D005934 ORTHO05D005165 4.5e-26 123.2 253 39.1
THA.LOC104819150 Tarenaya hassleriana HOM05D005934 ORTHO05D005165 7.7e-26 122.5 166 50.6
BraA03t13391Z Brassica rapa HOM05D005934 ORTHO05D005165 1.2e-23 115.2 187 43.3
A03p42390 Brassica napus HOM05D005934 ORTHO05D005165 2.7e-23 114.0 187 42.8
Nn2g10703 Nelumbo nucifera HOM05D005934 ORTHO05D005165 1.0e-17 95.5 72 73.6
Peaxi162Scf00108g01217 Petunia axillaris HOM05D005934 ORTHO05D005165 1.9e-16 91.3 353 30.3
Lsat_1_v5_gn_1_128800 Lactuca sativa HOM05D005934 ORTHO05D005165 1.2e-15 88.6 181 39.8
SalBow4G2489 Salvia bowleyana HOM05D011515 ORTHO05D005165 1.8e-14 84.7 95 52.6
MCO09G455 Micromonas commoda HOM05D005934 ORTHO05D005165 8.8e-14 82.4 327 30.9
SalBow4G0998 Salvia bowleyana HOM05D011515 ORTHO05D005165 8.8e-14 82.4 95 51.6
Hund22503 Selenicereus undatus HOM05D005934 ORTHO05D005165 5.7e-13 79.7 167 42.5
Actinidia03038 Actinidia chinensis HOM05D005934 ORTHO05D005165 6.5e-09 66.2 151 38.4
Peaxi162Scf00108g01212 Petunia axillaris HOM05D005934 ORTHO05D005165 6.5e-09 66.2 145 37.2
Medtr1g101870 Medicago truncatula HOM05D000280 ORTHO05D000632 7.2e-08 62.8 50 66.0
Nn2g10701 Nelumbo nucifera HOM05D005934 ORTHO05D005165 2.7e-07 60.8 128 36.7


User provided reference genes

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